Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc24g0002420 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.9e-127 459.1 224 100.0
Sc24g0002410 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.1e-114 414.8 224 89.3
Sc24g0002440 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.2e-70 270.4 155 83.2
Sc22g0001740 Simmondsia chinensis HOM05D004865 ORTHO05D005949 7.8e-65 251.1 224 55.8
Sc23g0005380 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.0e-61 238.8 204 59.8
Sc02g0003580 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.4e-60 235.7 218 56.0
Sc22g0001760 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.4e-60 235.7 224 54.9
Sc22g0001710 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.1e-57 226.5 224 54.0
Sc22g0001750 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.2e-54 217.2 222 50.0
Sc22g0001730 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.1e-53 214.2 222 50.5
Sed0022242 Sechium edule HOM05D004865 ORTHO05D005949 1.9e-50 203.4 223 48.9
ClCG11G000590 Citrullus lanatus HOM05D004865 ORTHO05D005949 2.3e-48 196.4 224 48.2
ClCG11G000680 Citrullus lanatus HOM05D004865 ORTHO05D005949 8.7e-48 194.5 224 47.3
ClCG03G011170 Citrullus lanatus HOM05D004865 ORTHO05D005949 1.5e-47 193.7 221 48.9
Sc09g0006330 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.9e-47 193.4 221 48.9
MELO3C010083.2 Cucumis melo HOM05D004865 ORTHO05D005949 2.4e-45 186.4 221 44.8
ClCG03G011140 Citrullus lanatus HOM05D004865 ORTHO05D005949 3.1e-45 186.0 221 46.2
Sc09g0006530 Simmondsia chinensis HOM05D004865 ORTHO05D005949 6.9e-45 184.9 221 48.4
CsaV3_1G044030 Cucumis sativus L. HOM05D004865 ORTHO05D005949 1.2e-44 184.1 221 44.3
MD09G1162600 Malus domestica HOM05D004865 ORTHO05D005949 4.9e-43 178.7 222 45.0
Lj3A898T31 Lonicera japonica HOM05D004865 ORTHO05D005949 1.1e-42 177.6 224 46.0
Sc22g0001720 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.4e-42 177.2 166 54.8
MD09G1162700 Malus domestica HOM05D004865 ORTHO05D005949 2.1e-41 173.3 222 43.7
MD17G1147700 Malus domestica HOM05D004865 ORTHO05D005949 2.1e-41 173.3 183 48.6
Sc23g0005400 Simmondsia chinensis HOM05D004865 ORTHO05D005949 6.0e-41 171.8 220 46.4
MD09G1162900 Malus domestica HOM05D004865 ORTHO05D005949 7.9e-41 171.4 224 43.8
MD09G1163100 Malus domestica HOM05D004865 ORTHO05D005949 1.7e-40 170.2 225 44.0
EL10As6g23631 Beta vulgaris HOM05D004865 ORTHO05D005949 3.3e-39 166.0 224 40.6
AUR62012544 Chenopodium quinoa HOM05D004865 ORTHO05D005949 3.3e-39 166.0 224 42.0
Sc09g0006350 Simmondsia chinensis HOM05D004865 ORTHO05D005949 7.4e-39 164.9 210 43.3
EL10As6g23632 Beta vulgaris HOM05D004865 ORTHO05D005949 2.8e-38 162.9 224 39.7
Sc06g0005920 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.8e-38 162.9 223 43.5
Hma1.2p1_0543F.1_g175180 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 5.3e-37 158.7 218 42.7
Hma1.2p1_3336F.1_g335335 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 5.3e-37 158.7 218 42.7
Sc09g0006340 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.5e-36 157.1 208 45.2
Actinidia30932 Actinidia chinensis HOM05D004865 ORTHO05D005949 2.6e-36 156.4 222 42.3
MD05G1102400 Malus domestica HOM05D004865 ORTHO05D005949 2.6e-36 156.4 222 43.2
AUR62014652 Chenopodium quinoa HOM05D004865 ORTHO05D005949 5.8e-36 155.2 220 40.5
Prupe.2G116800 Prunus persica HOM05D004865 ORTHO05D005949 1.3e-35 154.1 223 43.5
Ah.06g181840 Amaranthus hybridus HOM05D004865 ORTHO05D005949 2.2e-35 153.3 227 40.5
Actinidia30931 Actinidia chinensis HOM05D004865 ORTHO05D005949 1.1e-34 151.0 223 42.6
Sc17g0004370 Simmondsia chinensis HOM05D004865 ORTHO05D005949 5.5e-34 148.7 165 48.5
Actinidia05767 Actinidia chinensis HOM05D004865 ORTHO05D005949 2.7e-33 146.4 167 44.3
Duzib052G0039 Durio zibethinus HOM05D004865 ORTHO05D005949 6.7e-32 141.7 213 39.4
FAN22G1472 Fragaria x ananassa HOM05D004865 ORTHO05D005949 1.9e-31 140.2 224 36.6
AUR62044724 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.6e-30 137.1 220 39.1
MD17G1148100 Malus domestica HOM05D004865 ORTHO05D005949 1.8e-29 133.7 149 50.3
MD17G1148200 Malus domestica HOM05D004865 ORTHO05D005949 1.8e-29 133.7 149 50.3
Prupe.1G577300 Prunus persica HOM05D004865 ORTHO05D005949 3.1e-29 132.9 157 47.1
AUR62036569 Chenopodium quinoa HOM05D004865 ORTHO05D005949 5.3e-29 132.1 204 39.7
AUR62031152 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.5e-28 130.6 204 39.2
AUR62012547 Chenopodium quinoa HOM05D004865 ORTHO05D005949 5.8e-28 128.6 216 37.0
Sc16g0002960 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.0e-27 127.9 191 41.4
Hma1.2p1_1768F.1_g301530 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 1.3e-27 127.5 153 44.4
FAN02G0162 Fragaria x ananassa HOM05D004865 ORTHO05D005949 1.1e-26 124.4 215 35.3
Ah.14g087230 Amaranthus hybridus HOM05D004865 ORTHO05D005949 2.5e-26 123.2 191 37.7
AUR62014649 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.5e-26 123.2 155 43.9
FAN09G4882 Fragaria x ananassa HOM05D004865 ORTHO05D005949 2.5e-26 123.2 248 33.1
AUR62031151 Chenopodium quinoa HOM05D004865 ORTHO05D005949 3.2e-26 122.9 204 38.2
Cre07.g321800 Chlamydomonas reinhardtii HOM05D004865 ORTHO05D005949 4.2e-26 122.5 186 38.2
HanXRQChr14g0437021 Helianthus annuus HOM05D000041 ORTHO05D000452 4.2e-26 122.5 219 34.2
AUR62012571 Chenopodium quinoa HOM05D004865 ORTHO05D005949 5.5e-26 122.1 176 39.2
FvH4_6g36010 Fragaria vesca HOM05D004865 ORTHO05D005949 5.5e-26 122.1 224 35.3
Ah.14g087240 Amaranthus hybridus HOM05D004865 ORTHO05D005949 7.1e-26 121.7 204 37.3
AUR62036568 Chenopodium quinoa HOM05D004865 ORTHO05D005949 9.3e-26 121.3 204 38.2
CSS0028314 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 2.1e-25 120.2 218 38.1
AUR62044116 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.1e-25 120.2 148 41.2
Duzib212G1045 Durio zibethinus HOM05D004865 ORTHO05D005949 2.1e-25 120.2 220 36.8
Gohir.D10G128100 Gossypium hirsutum HOM05D004865 ORTHO05D005949 2.7e-25 119.8 219 33.3
Gorai.011G141300 Gossypium raimondii HOM05D004865 ORTHO05D005949 2.7e-25 119.8 219 33.3
Zm00001eb137370 Zea mays HOM05D004865 ORTHO05D005949 2.7e-25 119.8 198 35.9
CSS0027528 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 4.6e-25 119.0 194 41.2
Gohir.A10G138700 Gossypium hirsutum HOM05D004865 ORTHO05D005949 4.6e-25 119.0 219 33.3
SGA_v2.0_scaffold11G05644 Striga asiatica HOM05D004865 ORTHO05D005949 4.6e-25 119.0 184 40.8
DCAR_016016 Daucus carota HOM05D004865 ORTHO05D005949 7.9e-25 118.2 203 35.5
EL10Ac8g20499 Beta vulgaris HOM05D004865 ORTHO05D005949 1.0e-24 117.9 204 36.8
DCAR_015955 Daucus carota HOM05D004865 ORTHO05D005949 5.1e-24 115.5 203 35.5
DCAR_015954 Daucus carota HOM05D004865 ORTHO05D005949 6.7e-24 115.2 204 35.3
MD17G1148000 Malus domestica HOM05D004865 ORTHO05D005949 1.1e-23 114.4 221 36.2
Zm00001eb137430 Zea mays HOM05D004865 ORTHO05D005949 1.1e-23 114.4 198 34.8
CSS0005385 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 5.7e-23 112.1 202 39.6
Ah.14g087250 Amaranthus hybridus HOM05D004865 ORTHO05D005949 9.6e-23 111.3 159 40.3
DCAR_016015 Daucus carota HOM05D004865 ORTHO05D005949 1.3e-22 110.9 181 36.5
Os04g0308500 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 2.1e-22 110.2 177 39.0
Os04g0310100 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 2.1e-22 110.2 177 39.0
ECA233G0690 Erigeron canadensis HOM05D000041 ORTHO05D000452 2.8e-22 109.8 221 32.6
EL10Ac8g20500 Beta vulgaris HOM05D004865 ORTHO05D005949 4.8e-22 109.0 202 36.1
Lj1P308T9 Lonicera japonica HOM05D004865 ORTHO05D005949 8.2e-22 108.2 128 48.4
Lj1P314T6 Lonicera japonica HOM05D004865 ORTHO05D005949 1.4e-21 107.5 128 47.7
Lj6C375T0 Lonicera japonica HOM05D004865 ORTHO05D005949 1.4e-21 107.5 181 37.6
Sc16g0002940 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.4e-21 107.5 109 52.3
Lj1P501T11 Lonicera japonica HOM05D004865 ORTHO05D005949 2.4e-21 106.7 128 45.3
Lj1P506T13 Lonicera japonica HOM05D004865 ORTHO05D005949 2.4e-21 106.7 128 45.3
Lj6P373T4 Lonicera japonica HOM05D004865 ORTHO05D005949 2.4e-21 106.7 138 42.8
AUR62012550 Chenopodium quinoa HOM05D004865 ORTHO05D005949 3.1e-21 106.3 221 34.4
Lsat_1_v5_gn_8_2701 Lactuca sativa HOM05D000041 ORTHO05D000452 4.1e-21 105.9 178 34.3
SGA_v2.0_scaffold163G38046 Striga asiatica HOM05D004865 ORTHO05D005949 5.3e-21 105.5 221 34.4
Lj1P506T10 Lonicera japonica HOM05D004865 ORTHO05D005949 9.0e-21 104.8 128 44.5
Lj1P515T6 Lonicera japonica HOM05D004865 ORTHO05D005949 9.0e-21 104.8 128 44.5
AUR62027395 Chenopodium quinoa HOM05D004865 ORTHO05D005949 4.5e-20 102.4 192 35.9
CSS0032746 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 2.2e-19 100.1 153 45.1
Lj6P379T11 Lonicera japonica HOM05D004865 ORTHO05D005949 2.2e-19 100.1 138 41.3
Lj6P378T3 Lonicera japonica HOM05D004865 ORTHO05D005949 3.8e-19 99.4 138 41.3
Zm00001eb137410 Zea mays HOM05D004865 ORTHO05D005949 5.0e-19 99.0 209 32.5
Zm00001eb137380 Zea mays HOM05D004865 ORTHO05D005949 1.9e-18 97.1 209 32.5
Lj6P371T8 Lonicera japonica HOM05D004865 ORTHO05D005949 3.2e-18 96.3 138 39.9
Os04g0308400 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 4.2e-18 95.9 207 31.4
Os04g0310200 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 4.2e-18 95.9 207 31.4
MELO3C031484.2 Cucumis melo HOM05D004865 ORTHO05D005949 1.3e-16 90.9 225 32.4
SGA_v2.0_scaffold11G05649 Striga asiatica HOM05D004865 ORTHO05D005949 3.9e-16 89.4 145 38.6
Sed0001554 Sechium edule HOM05D004865 ORTHO05D034719 8.7e-16 88.2 223 30.9
FAN14G5541 Fragaria x ananassa HOM05D004865 ORTHO05D005949 1.1e-15 87.8 107 43.0
CSS0013136 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 3.3e-15 86.3 142 38.0
AUR62027396 Chenopodium quinoa HOM05D004865 ORTHO05D005949 4.3e-15 85.9 134 38.8
SGA_v2.0_scaffold105G30447 Striga asiatica HOM05D004865 ORTHO05D005949 7.4e-15 85.1 166 31.3
FAN14G3467 Fragaria x ananassa HOM05D004865 ORTHO05D005949 1.6e-14 84.0 107 41.1
Sed0017379 Sechium edule HOM05D004865 ORTHO05D005949 2.2e-14 83.6 200 29.0
Lsat_1_v5_gn_6_87560 Lactuca sativa HOM05D004865 ORTHO05D005949 2.8e-14 83.2 176 34.1
HanXRQChr17g0555801 Helianthus annuus HOM05D004865 ORTHO05D005949 3.7e-14 82.8 219 32.0
HanXRQChr17g0555831 Helianthus annuus HOM05D004865 ORTHO05D005949 4.8e-14 82.4 219 32.0
HanXRQChr13g0416771 Helianthus annuus HOM05D004865 ORTHO05D005949 1.1e-13 81.3 198 33.3
ECA233G1731 Erigeron canadensis HOM05D004865 ORTHO05D005949 3.1e-13 79.7 165 34.5
HanXRQChr13g0416751 Helianthus annuus HOM05D004865 ORTHO05D005949 4.1e-13 79.3 198 32.8
AUR62014650 Chenopodium quinoa HOM05D004865 ORTHO05D005949 9.0e-13 78.2 100 44.0
Ah.14g087270 Amaranthus hybridus HOM05D004865 ORTHO05D005949 2.6e-12 76.6 153 31.4
Lsat_1_v5_gn_0_11001 Lactuca sativa HOM05D004865 ORTHO05D005949 2.6e-12 76.6 192 32.3
EL10Ac6g13635 Beta vulgaris HOM05D004865 ORTHO05D005949 4.5e-12 75.9 223 30.0
Sc05g0005670 Simmondsia chinensis HOM05D004865 ORTHO05D005949 7.7e-12 75.1 81 50.6
ECA233G6014 Erigeron canadensis HOM05D004865 ORTHO05D005949 1.0e-11 74.7 146 36.3
HanXRQChr03g0060851 Helianthus annuus HOM05D004865 ORTHO05D005949 2.2e-11 73.6 224 29.5
ECA233G5215 Erigeron canadensis HOM05D004865 ORTHO05D005949 3.8e-11 72.8 165 33.3
HanXRQChr03g0060861 Helianthus annuus HOM05D004865 ORTHO05D005949 3.8e-11 72.8 166 33.7
Lj6P371T11 Lonicera japonica HOM05D004865 ORTHO05D005949 3.8e-11 72.8 97 42.3
CsaV3_4G030090 Cucumis sativus L. HOM05D004865 ORTHO05D005949 6.5e-11 72.0 71 46.5
HanXRQChr13g0416741 Helianthus annuus HOM05D004865 ORTHO05D005949 1.4e-10 70.9 168 32.1
Prupe.2G116900 Prunus persica HOM05D004865 ORTHO05D005949 1.9e-10 70.5 211 30.3
AUR62014651 Chenopodium quinoa HOM05D004865 ORTHO05D005949 5.5e-10 68.9 101 37.6
HanXRQChr03g0085651 Helianthus annuus HOM05D004865 ORTHO05D005949 9.4e-10 68.2 197 29.9
HanXRQChr14g0461501 Helianthus annuus HOM05D004865 ORTHO05D005949 1.8e-08 63.9 116 37.1
ClCG03G010280 Citrullus lanatus HOM05D004865 ORTHO05D005949 1.5e-07 60.8 49 61.2


User provided reference genes

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