Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc24g0002240 Simmondsia chinensis HOM05D006032 ORTHO05D007544 5.0e-51 204.1 102 100.0
Sc01g0003280 Simmondsia chinensis HOM05D006032 ORTHO05D007544 2.8e-22 108.6 62 91.9
Cpa.g.sc184.23 Carica papaya HOM05D006032 ORTHO05D007544 1.4e-08 63.2 62 53.2
SGA_v2.0_scaffold95G28814 Striga asiatica HOM05D006032 ORTHO05D007544 6.8e-08 60.8 48 58.3
arahy.Tifrunner.gnm1.ann1.S0M071 Arachis hypogaea HOM05D006032 ORTHO05D007544 8.9e-08 60.5 53 54.7
arahy.Tifrunner.gnm1.ann1.XQ5AKE Arachis hypogaea HOM05D006032 ORTHO05D007544 8.9e-08 60.5 53 54.7
MSTRG.20857 Avicennia marina HOM05D006032 ORTHO05D007544 1.2e-07 60.1 46 60.9
EL10Ac1g00366 Beta vulgaris HOM05D006032 ORTHO05D007544 1.2e-07 60.1 52 57.7
unitig_22.g5344 Utricularia gibba HOM05D003213 ORTHO05D003693 1.2e-07 60.1 46 56.5
Sabra02G0122600 Salix brachista HOM05D006032 ORTHO05D007544 2.0e-07 59.3 58 53.4
Atru.chr5.551 Acer truncatum HOM05D006032 ORTHO05D007544 2.6e-07 58.9 64 48.4
Migut.B01790 Erythranthe guttata HOM05D006032 ORTHO05D007544 3.4e-07 58.5 46 58.7
Gohir.A07G140700 Gossypium hirsutum HOM05D006032 ORTHO05D007544 3.4e-07 58.5 53 58.5
Gohir.D07G146100 Gossypium hirsutum HOM05D006032 ORTHO05D007544 3.4e-07 58.5 53 58.5
Gorai.001G158300 Gossypium raimondii HOM05D006032 ORTHO05D007544 3.4e-07 58.5 53 58.5
AUR62004402 Chenopodium quinoa HOM05D006032 ORTHO05D007544 4.4e-07 58.2 56 51.8
Cc02_g38440 Coffea canephora HOM05D006032 ORTHO05D007544 4.4e-07 58.2 54 55.6
COL.COLO4_12764 Corchorus olitorius HOM05D006032 ORTHO05D007544 4.4e-07 58.2 46 58.7
Eucgr.D02319 Eucalyptus grandis HOM05D006032 ORTHO05D007544 4.4e-07 58.2 46 58.7
Ciclev10021696m.g Citrus clementina HOM05D006032 ORTHO05D007544 5.8e-07 57.8 42 64.3
DCAR_006944 Daucus carota HOM05D006032 ORTHO05D007544 7.5e-07 57.4 50 54.0
Thecc.01G353900 Theobroma cacao HOM05D006032 ORTHO05D007544 7.5e-07 57.4 53 54.7
FAN01G2970 Fragaria x ananassa HOM05D006032 ORTHO05D007544 9.8e-07 57.0 48 58.3
FAN03G1341 Fragaria x ananassa HOM05D006032 ORTHO05D007544 9.8e-07 57.0 48 58.3
FAN06G2046 Fragaria x ananassa HOM05D006032 ORTHO05D007544 9.8e-07 57.0 48 58.3
FAN06G3864 Fragaria x ananassa HOM05D006032 ORTHO05D007544 9.8e-07 57.0 48 58.3
FAN10G0977 Fragaria x ananassa HOM05D006032 ORTHO05D007544 9.8e-07 57.0 48 58.3
FAN10G2244 Fragaria x ananassa HOM05D006032 ORTHO05D007544 9.8e-07 57.0 48 58.3
FvH4_7g15110 Fragaria vesca HOM05D006032 ORTHO05D007544 1.3e-06 56.6 48 58.3
Manes.01G253200 Manihot esculenta HOM05D006032 ORTHO05D007544 1.3e-06 56.6 52 55.8
Dinv32511 Davidia involucrata HOM05D006032 ORTHO05D007544 1.7e-06 56.2 52 50.0
Nitab4.5_0006802g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 1.7e-06 56.2 46 54.3
Potri.002G154600 Populus trichocarpa HOM05D006032 ORTHO05D007544 1.7e-06 56.2 52 53.8
PGR031G1164 Punica granatum HOM05D006032 ORTHO05D007544 1.7e-06 56.2 46 58.7
Hund27251 Selenicereus undatus HOM05D006032 ORTHO05D007544 1.7e-06 56.2 46 56.5
CAN.G1091.3 Capsicum annuum HOM05D006032 ORTHO05D007544 2.2e-06 55.8 57 45.6
AUR62022608 Chenopodium quinoa HOM05D006032 ORTHO05D007544 2.2e-06 55.8 56 50.0
RcHm_v2.0_Chr1g0357301 Rosa chinensis HOM05D006032 ORTHO05D007544 2.2e-06 55.8 48 56.2
Haze_15552 Corylus avellana HOM05D006032 ORTHO05D007544 2.9e-06 55.5 50 54.0
Hma1.2p1_2961F.1_g330870 Hydrangea macrophylla HOM05D006032 ORTHO05D007544 3.7e-06 55.1 65 47.7
SalBow3G2277 Salvia bowleyana HOM05D006032 ORTHO05D007544 3.7e-06 55.1 46 54.3
TWI59G0434 Tripterygium wilfordii HOM05D006032 ORTHO05D007544 3.7e-06 55.1 70 45.7
CSS0027447 Camellia sinensis var. sinensis HOM05D006032 ORTHO05D007544 4.9e-06 54.7 55 47.3
CDE04G3178 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 4.9e-06 54.7 74 43.2
Lalb_Chr19g0126911 Lupinus albus HOM05D006032 ORTHO05D007544 4.9e-06 54.7 54 51.9
Ah.05g180230 Amaranthus hybridus HOM05D003611 ORTHO05D007544 6.4e-06 54.3 51 49.0
BcaB01g02152 Brassica carinata HOM05D006032 ORTHO05D007544 6.4e-06 54.3 55 49.1
MELO3C006088.2 Cucumis melo HOM05D006032 ORTHO05D007544 6.4e-06 54.3 42 59.5
HanXRQChr06g0170291 Helianthus annuus HOM05D006032 ORTHO05D007544 6.4e-06 54.3 52 50.0
Lj7A509T108 Lonicera japonica HOM05D006032 ORTHO05D007544 6.4e-06 54.3 48 50.0
Medtr7g078800 Medicago truncatula HOM05D006032 ORTHO05D007544 6.4e-06 54.3 49 59.2
Nitab4.5_0002682g0080 Nicotiana tabacum HOM05D006032 ORTHO05D007544 6.4e-06 54.3 46 52.2
Cfa003882 Carpinus fangiana HOM05D006032 ORTHO05D007544 8.3e-06 53.9 50 50.0
CDE12G0723 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 8.3e-06 53.9 63 49.2
THA.LOC104817034 Tarenaya hassleriana HOM05D006032 ORTHO05D007544 8.3e-06 53.9 41 58.5


User provided reference genes

Program Settings