Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc24g0001860 Simmondsia chinensis HOM05D006082 ORTHO05D007616 1.0e-105 386.7 196 100.0
AUR62016743 Chenopodium quinoa HOM05D006082 ORTHO05D007616 1.6e-53 213.4 194 57.2
Ah.01g019340 Amaranthus hybridus HOM05D006082 ORTHO05D007616 1.9e-51 206.5 192 56.8
Ciclev10022037m.g Citrus clementina HOM05D006082 ORTHO05D007616 3.9e-44 182.2 201 49.8
GSVIVG01027464001 Vitis vinifera HOM05D006082 ORTHO05D007616 1.9e-43 179.9 201 48.3
MSTRG.15681 Avicennia marina HOM05D006082 ORTHO05D007616 5.3e-41 171.8 205 45.9
Gorai.007G114300 Gossypium raimondii HOM05D006082 ORTHO05D007616 3.4e-40 169.1 201 47.8
Duzib133G0864 Durio zibethinus HOM05D006082 ORTHO05D007616 5.8e-40 168.3 201 48.8
Gohir.A11G102200 Gossypium hirsutum HOM05D006082 ORTHO05D007616 7.6e-40 167.9 201 46.8
QL01p017595 Quercus lobata HOM05D006082 ORTHO05D007616 1.3e-39 167.2 203 46.8
Thecc.01G331100 Theobroma cacao HOM05D006082 ORTHO05D007616 1.3e-39 167.2 200 49.0
Migut.L00265 Erythranthe guttata HOM05D006082 ORTHO05D007616 2.2e-39 166.4 201 46.8
HanXRQChr14g0454421 Helianthus annuus HOM05D006082 ORTHO05D007616 2.9e-39 166.0 203 43.8
ECA238G2330 Erigeron canadensis HOM05D006082 ORTHO05D007616 6.4e-39 164.9 203 43.3
EL10Ac9g21719 Beta vulgaris HOM05D006082 ORTHO05D003517 3.2e-38 162.5 157 54.8
Atru.chr5.795 Acer truncatum HOM05D006082 ORTHO05D007616 7.1e-38 161.4 201 45.8
Cc03_g11310 Coffea canephora HOM05D006082 ORTHO05D007616 9.3e-38 161.0 200 45.0
Eucgr.G03261 Eucalyptus grandis HOM05D006082 ORTHO05D007616 9.3e-38 161.0 203 46.3
Potri.014G107300 Populus trichocarpa HOM05D006082 ORTHO05D007616 2.1e-37 159.8 201 45.3
CARHR001490 Cardamine hirsuta HOM05D006082 ORTHO05D007616 4.6e-37 158.7 194 44.3
THA.LOC104815904 Tarenaya hassleriana HOM05D006082 ORTHO05D007616 4.6e-37 158.7 200 44.0
A10p00890 Brassica napus HOM05D006082 ORTHO05D007616 7.9e-37 157.9 193 46.1
PGSC0003DMG400016241 Solanum tuberosum HOM05D006082 ORTHO05D007616 1.0e-36 157.5 199 48.2
TPR.G16094 Trifolium pratense HOM05D006082 ORTHO05D007616 1.3e-36 157.1 201 43.3
Solyc11g008790.3 Solanum lycopersicum HOM05D006082 ORTHO05D007616 1.8e-36 156.8 199 48.2
Sopen11g004570 Solanum pennellii HOM05D006082 ORTHO05D007616 1.8e-36 156.8 199 48.2
TWI14G1025 Tripterygium wilfordii HOM05D006082 ORTHO05D007616 1.8e-36 156.8 201 46.3
Psat3g079600 Pisum sativum HOM05D006082 ORTHO05D007616 2.3e-36 156.4 201 42.8
unitig_899.g14456 Utricularia gibba HOM05D003044 ORTHO05D007616 2.3e-36 156.4 202 42.6
BraA10t42369Z Brassica rapa HOM05D006082 ORTHO05D007616 3.0e-36 156.0 193 46.1
CAN.G691.19 Capsicum annuum HOM05D006082 ORTHO05D007616 3.0e-36 156.0 199 46.7
PGR031G0479 Punica granatum HOM05D006082 ORTHO05D007616 3.9e-36 155.6 203 41.4
Sp1g01290 Schrenkiella parvula HOM05D006082 ORTHO05D007616 3.9e-36 155.6 197 44.2
AL1G11510 Arabidopsis lyrata HOM05D006082 ORTHO05D007616 5.1e-36 155.2 198 43.4
Carub.0001s0120 Capsella rubella HOM05D006082 ORTHO05D007616 8.7e-36 154.5 197 44.2
CARHR250170 Cardamine hirsuta HOM05D006082 ORTHO05D007616 8.7e-36 154.5 200 44.0
BcaB03g13546 Brassica carinata HOM05D006082 ORTHO05D007616 1.1e-35 154.1 192 46.9
CsaV3_3G007110 Cucumis sativus L. HOM05D006082 ORTHO05D007616 1.1e-35 154.1 201 45.3
TAR375G0813 Trochodendron aralioides HOM05D006082 ORTHO05D007616 1.5e-35 153.7 201 42.3
PSO675G6409 Papaver somniferum HOM05D006082 ORTHO05D007616 1.9e-35 153.3 201 42.3
RcHm_v2.0_Chr1g0361381 Rosa chinensis HOM05D006082 ORTHO05D007616 4.3e-35 152.1 201 44.3
CANSAT56G1086 Cannabis sativa HOM05D006082 ORTHO05D007616 5.6e-35 151.8 204 44.1
FAN06G3489 Fragaria x ananassa HOM05D006082 ORTHO05D007616 5.6e-35 151.8 201 43.8
Os03g0784300 Oryza sativa ssp. japonica HOM05D006082 ORTHO05D007616 5.6e-35 151.8 200 44.5
C05p00920 Brassica napus HOM05D006082 ORTHO05D007616 7.4e-35 151.4 194 45.9
BolC5t28877H Brassica oleracea HOM05D006082 ORTHO05D007616 7.4e-35 151.4 194 45.9
PSO675G6921 Papaver somniferum HOM05D006082 ORTHO05D007616 7.4e-35 151.4 203 41.9
Carub.0006s3568 Capsella rubella HOM05D006082 ORTHO05D007616 9.6e-35 151.0 198 43.9
Thhalv10028930m.g Eutrema salsugineum HOM05D006082 ORTHO05D007616 9.6e-35 151.0 197 43.1
Lalb_Chr17g0343121 Lupinus albus HOM05D006082 ORTHO05D007616 9.6e-35 151.0 202 40.6
Thhalv10008618m.g Eutrema salsugineum HOM05D006082 ORTHO05D007616 1.3e-34 150.6 197 43.7
Medtr7g089460 Medicago truncatula HOM05D006082 ORTHO05D007616 1.3e-34 150.6 201 41.3
AL6G51830 Arabidopsis lyrata HOM05D006082 ORTHO05D007616 1.6e-34 150.2 198 43.4
HPP92_015681 Vanilla planifolia HOM05D006082 ORTHO05D007616 2.1e-34 149.8 196 44.9
Actinidia33031 Actinidia chinensis HOM05D006082 ORTHO05D007616 2.8e-34 149.4 206 43.2
Ca_08380_v3 Cicer arietinum L. HOM05D006082 ORTHO05D007616 2.8e-34 149.4 194 43.8
FvH4_7g17940 Fragaria vesca HOM05D006082 ORTHO05D007616 2.8e-34 149.4 201 43.3
Lj1g0004702 Lotus japonicus HOM05D006082 ORTHO05D007616 2.8e-34 149.4 200 42.5
Prupe.2G201100 Prunus persica HOM05D006082 ORTHO05D007616 2.8e-34 149.4 201 42.8
MD01G1091900 Malus domestica HOM05D006082 ORTHO05D007616 3.7e-34 149.1 201 43.8
A09p01070 Brassica napus HOM05D006082 ORTHO05D007616 4.8e-34 148.7 198 44.4
C09p01160 Brassica napus HOM05D006082 ORTHO05D007616 6.2e-34 148.3 198 44.4
Dinv04258 Davidia involucrata HOM05D006082 ORTHO05D007616 6.2e-34 148.3 201 44.8
Glyma.19G129400 Glycine max HOM05D006082 ORTHO05D007616 1.1e-33 147.5 201 41.3
Phvul.001G121700 Phaseolus vulgaris HOM05D006082 ORTHO05D007616 1.1e-33 147.5 201 41.8
arahy.Tifrunner.gnm1.ann1.6SRZ86 Arachis hypogaea HOM05D006082 ORTHO05D007616 1.4e-33 147.1 193 39.4
Glyma.03G126300 Glycine max HOM05D006082 ORTHO05D007616 1.4e-33 147.1 201 40.8
arahy.Tifrunner.gnm1.ann1.9R6DDK Arachis hypogaea HOM05D006082 ORTHO05D007616 1.8e-33 146.7 193 39.9
MELO3C005932.2 Cucumis melo HOM05D006082 ORTHO05D007616 1.8e-33 146.7 200 44.0
FAN03G2817 Fragaria x ananassa HOM05D006082 ORTHO05D007616 1.8e-33 146.7 211 41.7
SEGI_04405 Sequoiadendron giganteum HOM05D006082 ORTHO05D007616 1.8e-33 146.7 201 42.8
Aqoxy5G00354 Aquilegia oxysepala HOM05D006082 ORTHO05D007616 3.1e-33 146.0 199 43.7
FAN06G1515 Fragaria x ananassa HOM05D006082 ORTHO05D007616 3.1e-33 146.0 207 42.5
Sp6g01450 Schrenkiella parvula HOM05D006082 ORTHO05D007616 3.1e-33 146.0 198 42.4
ATR1136G056 Amborella trichopoda HOM05D006082 ORTHO05D007616 4.0e-33 145.6 205 40.0
AT4G01510 Arabidopsis thaliana HOM05D006082 ORTHO05D007616 9.0e-33 144.4 192 42.7
ClCG05G000050 Citrullus lanatus HOM05D006082 ORTHO05D007616 1.2e-32 144.1 212 42.5
Aa31LG5G1260 Aethionema arabicum HOM05D006082 ORTHO05D007616 3.8e-31 139.0 196 40.3
Nn1g00467 Nelumbo nucifera HOM05D006082 ORTHO05D007616 8.4e-31 137.9 201 43.8
Haze_15761 Corylus avellana HOM05D006082 ORTHO05D007616 1.1e-30 137.5 195 39.0
Gohir.D11G106800 Gossypium hirsutum HOM05D006082 ORTHO05D007616 1.9e-30 136.7 196 42.9
CANSAT56G0035 Cannabis sativa HOM05D006082 ORTHO05D007616 3.2e-30 136.0 199 41.7
CDE08G0270 Ceratophyllum demersum HOM05D006082 ORTHO05D007616 3.2e-30 136.0 197 42.1
Manes.05G014900 Manihot esculenta HOM05D006082 ORTHO05D007616 5.5e-30 135.2 169 47.3
MBI06_g35217_MAGBIO Magnolia biondii HOM05D006082 ORTHO05D007616 1.2e-29 134.0 189 41.3
Aa31LG1G10340 Aethionema arabicum HOM05D006082 ORTHO05D007616 1.6e-29 133.7 201 40.3
BolC9t53049H Brassica oleracea HOM05D006082 ORTHO05D007616 1.6e-29 133.7 227 39.2
BraA09t35778Z Brassica rapa HOM05D006082 ORTHO05D007616 1.6e-29 133.7 226 38.9
FAN10G2982 Fragaria x ananassa HOM05D006082 ORTHO05D007616 1.6e-29 133.7 214 38.8
Pp3c10_9330 Physcomitrium patens HOM05D006082 ORTHO05D007616 5.6e-27 125.2 201 40.3
vmacro11192 Vaccinium macrocarpon HOM05D006082 ORTHO05D007616 4.8e-26 122.1 292 31.8
Nitab4.5_0000743g0220 Nicotiana tabacum HOM05D006082 ORTHO05D007616 3.4e-24 115.9 205 40.0
Zm00001eb059810 Zea mays HOM05D006082 ORTHO05D007616 7.6e-24 114.8 170 42.4
CSS0012451 Camellia sinensis var. sinensis HOM05D006082 ORTHO05D007616 1.3e-23 114.0 162 43.8
Potri.002G181700 Populus trichocarpa HOM05D006082 ORTHO05D007616 6.5e-23 111.7 188 36.7
Mapoly0050s0018 Marchantia polymorpha HOM05D006082 ORTHO05D007616 1.1e-22 110.9 205 35.6
FAN01G2730 Fragaria x ananassa HOM05D006082 ORTHO05D007616 7.1e-22 108.2 207 36.7
Lsat_1_v5_gn_2_88861 Lactuca sativa HOM05D006082 ORTHO05D007616 1.2e-21 107.5 163 41.1
SMO367G0224 Selaginella moellendorffii HOM05D006082 ORTHO05D007616 1.6e-21 107.1 190 35.8
COL.COLO4_23067 Corchorus olitorius HOM05D006082 ORTHO05D007616 2.7e-21 106.3 139 45.3
Peaxi162Scf00090g00046 Petunia axillaris HOM05D006082 ORTHO05D007616 1.8e-20 103.6 227 34.8
AagrBONN_evm.TU.Sc2ySwM_340.22 Anthoceros agrestis HOM05D006082 ORTHO05D007616 1.5e-19 100.5 201 32.8
Hma1.2p1_0451F.1_g155790 Hydrangea macrophylla HOM05D006082 ORTHO05D007616 7.4e-19 98.2 63 66.7
C05p00960 Brassica napus HOM05D006082 ORTHO05D007616 3.7e-18 95.9 277 29.2
CiPaw.01G087100 Carya illinoinensis HOM05D006082 ORTHO05D007616 4.8e-18 95.5 162 41.4
Hma1.2p1_0262F.1_g105255 Hydrangea macrophylla HOM05D006082 ORTHO05D007616 6.3e-18 95.1 63 63.5
BolC5t28880H Brassica oleracea HOM05D006082 ORTHO05D007616 1.1e-17 94.4 262 29.4
DCAR_014739 Daucus carota HOM05D006082 ORTHO05D007616 1.4e-17 94.0 190 33.7
Migut.L00585 Erythranthe guttata HOM05D006082 ORTHO05D007616 1.4e-17 94.0 86 54.7
AT1G01020 Arabidopsis thaliana HOM05D006082 ORTHO05D007616 1.8e-17 93.6 157 36.9
Nitab4.5_0001677g0060 Nicotiana tabacum HOM05D006082 ORTHO05D007616 6.9e-17 91.7 255 29.8
SEGI_20928 Sequoiadendron giganteum HOM05D006082 ORTHO05D007616 2.6e-16 89.7 92 51.1
CBR_g1036 Chara braunii HOM05D006082 ORTHO05D007616 4.5e-16 89.0 219 31.1
BcaC05g24597 Brassica carinata HOM05D006082 ORTHO05D007616 8.5e-15 84.7 181 32.0
GSVIVG01003191001 Vitis vinifera HOM05D006082 ORTHO05D007616 5.5e-14 82.0 82 48.8
Hma1.2p1_0451F.1_g155800 Hydrangea macrophylla HOM05D006082 ORTHO05D007616 1.8e-12 77.0 84 46.4
QL03p043604 Quercus lobata HOM05D006082 ORTHO05D007616 1.1e-11 74.3 183 30.1
Sed0024729 Sechium edule HOM05D006082 ORTHO05D007616 2.5e-11 73.2 84 47.6
MD07G1162500 Malus domestica HOM05D006082 ORTHO05D007616 2.2e-10 70.1 108 39.8
SMO230G0051 Selaginella moellendorffii HOM05D006082 ORTHO05D007616 3.1e-09 66.2 163 31.3
GSVIVG01003186001 Vitis vinifera HOM05D006082 ORTHO05D007616 5.3e-09 65.5 54 51.9
C05p00940 Brassica napus HOM05D006082 ORTHO05D007616 1.7e-07 60.5 82 42.7
arahy.Tifrunner.gnm1.ann1.PGF6M0 Arachis hypogaea HOM05D006082 ORTHO05D007616 1.1e-06 57.8 215 24.2
BcaC05g24595 Brassica carinata HOM05D006082 ORTHO05D007616 5.5e-06 55.5 81 40.7


User provided reference genes

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