Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc24g0001460 Simmondsia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 3240.7 1706 100.0
Atru.chr10.895 Acer truncatum HOM05D004072 ORTHO05D005933 0.0e+00 2228.0 1690 68.0
Dinv32181 Davidia involucrata HOM05D004072 ORTHO05D005933 0.0e+00 2219.9 1690 69.3
AUR62038603 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 2213.0 1703 68.9
GSVIVG01021613001 Vitis vinifera HOM05D004072 ORTHO05D005933 0.0e+00 2209.9 1689 68.1
TAR627G0650 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 2209.5 1690 67.6
EL10Ac8g19581 Beta vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 2206.8 1708 70.4
RcHm_v2.0_Chr5g0015701 Rosa chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2206.0 1682 67.8
MD10G1254200 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2202.9 1688 66.9
Duzib132G0425 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2198.3 1686 68.6
CiPaw.10G086200 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 2197.9 1685 67.4
Manes.06G055700 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 2197.5 1686 67.7
Thecc.02G012200 Theobroma cacao HOM05D004072 ORTHO05D005933 0.0e+00 2188.7 1688 69.3
CiPaw.09G116100 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 2185.6 1688 67.1
Ah.14g086190 Amaranthus hybridus HOM05D004072 ORTHO05D005933 0.0e+00 2182.9 1688 68.4
Nn3g20249 Nelumbo nucifera HOM05D004072 ORTHO05D005933 0.0e+00 2176.7 1673 66.9
AUR62042015 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 2174.8 1684 69.4
Gohir.A01G139400 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2164.0 1695 65.9
CSS0029738 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 0.0e+00 2159.4 1673 67.2
Actinidia07470 Actinidia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2157.1 1689 65.9
Gorai.002G162800 Gossypium raimondii HOM05D004072 ORTHO05D005933 0.0e+00 2156.3 1690 68.2
MD05G1274500 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2153.6 1686 65.7
FvH4_3g09950 Fragaria vesca HOM05D004072 ORTHO05D005933 0.0e+00 2151.7 1688 67.7
TWI73G0101 Tripterygium wilfordii HOM05D004072 ORTHO05D005933 0.0e+00 2140.5 1691 67.3
Gohir.D01G131100 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2140.2 1696 68.1
FAN11G0415 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2131.7 1688 67.2
FAN16G0609 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2123.6 1692 65.2
PGR031G0553 Punica granatum HOM05D004072 ORTHO05D005933 0.0e+00 2122.8 1686 64.0
FAN25G0515 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2116.7 1688 66.6
CANSAT35G1345 Cannabis sativa HOM05D004072 ORTHO05D005933 0.0e+00 2114.7 1684 66.7
FAN21G2972 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2112.0 1688 66.8
SalBow8G4752 Salvia bowleyana HOM05D004072 ORTHO05D005933 0.0e+00 2111.3 1693 63.9
Duzib052G1035 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2110.1 1698 64.8
MSTRG.16285 Avicennia marina HOM05D004072 ORTHO05D005933 0.0e+00 2106.6 1706 63.4
Cc09_g08230 Coffea canephora HOM05D004072 ORTHO05D005933 0.0e+00 2105.5 1711 64.0
Potri.001G357700 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 2105.1 1687 65.1
Manes.14G122228 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 2099.7 1688 64.7
Sabra16G0235400 Salix brachista HOM05D004072 ORTHO05D005933 0.0e+00 2093.5 1707 64.4
Sed0022754 Sechium edule HOM05D004072 ORTHO05D005933 0.0e+00 2087.4 1689 66.1
Sopen02g019350 Solanum pennellii HOM05D004072 ORTHO05D005933 0.0e+00 2087.4 1684 64.8
CAN.G660.42 Capsicum annuum HOM05D004072 ORTHO05D005933 0.0e+00 2078.5 1698 62.8
Solyc02g070260.4 Solanum lycopersicum HOM05D004072 ORTHO05D005933 0.0e+00 2077.4 1684 64.6
Hund21569 Selenicereus undatus HOM05D004072 ORTHO05D005933 0.0e+00 2073.9 1656 67.8
Migut.M01885 Erythranthe guttata HOM05D004072 ORTHO05D005933 0.0e+00 2070.0 1700 64.5
Eucgr.E02482 Eucalyptus grandis HOM05D004072 ORTHO05D005933 0.0e+00 2061.2 1656 63.6
MELO3C007083.2 Cucumis melo HOM05D004072 ORTHO05D005933 0.0e+00 2060.0 1691 64.3
CsaV3_6G052280 Cucumis sativus L. HOM05D004072 ORTHO05D005933 0.0e+00 2053.1 1691 63.4
Nitab4.5_0008398g0020 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 2047.3 1691 63.8
PSO541G2055 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 2046.2 1692 62.5
Aqoxy1G01646_Aqoxy1G01645 Aquilegia oxysepala HOM05D004072 ORTHO05D005933 0.0e+00 2045.8 1688 63.6
PSO675G3632 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 2045.4 1691 62.6
Lj6g0006190 Lotus japonicus HOM05D004072 ORTHO05D005933 0.0e+00 2044.2 1681 63.1
Ca_02513_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 0.0e+00 2042.7 1648 64.3
QL05p053312 Quercus lobata HOM05D004072 ORTHO05D005933 0.0e+00 2040.8 1815 61.2
SGA_v2.0_scaffold223G42858 Striga asiatica HOM05D004072 ORTHO05D005933 0.0e+00 2025.0 1721 62.0
Lalb_Chr08g0233191 Lupinus albus HOM05D004072 ORTHO05D005933 0.0e+00 2024.2 1692 61.1
ATR0165G006 Amborella trichopoda HOM05D004072 ORTHO05D005933 0.0e+00 2021.1 1689 61.8
Prupe.4G089200 Prunus persica HOM05D004072 ORTHO05D005933 0.0e+00 2021.1 1746 62.8
Medtr2g048210 Medicago truncatula HOM05D004072 ORTHO05D005933 0.0e+00 2020.0 1655 63.7
ECA236G2867 Erigeron canadensis HOM05D004072 ORTHO05D005933 0.0e+00 2018.8 1638 64.5
Nitab4.5_0001181g0040 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 2018.0 1631 65.5
Phvul.009G217700 Phaseolus vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 2011.9 1654 65.8
Thhalv10016130m.g Eutrema salsugineum HOM05D004072 ORTHO05D005933 0.0e+00 2001.1 1667 63.2
Lsat_1_v5_gn_7_29400 Lactuca sativa HOM05D004072 ORTHO05D005933 0.0e+00 1996.9 1647 64.0
THA.LOC104798608 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 1996.9 1672 62.8
HanXRQChr04g0119071 Helianthus annuus HOM05D004072 ORTHO05D005933 0.0e+00 1992.2 1640 62.9
AT2G34680 Arabidopsis thaliana HOM05D004072 ORTHO05D005933 0.0e+00 1981.1 1660 63.7
Aa31LG10G6650 Aethionema arabicum HOM05D004072 ORTHO05D005933 0.0e+00 1976.1 1650 62.5
A03p19230 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 1971.8 1684 63.1
ClCG01G025080 Citrullus lanatus HOM05D004072 ORTHO05D005933 0.0e+00 1970.3 1828 59.9
AL4G30670 Arabidopsis lyrata HOM05D004072 ORTHO05D005933 0.0e+00 1966.4 1656 62.5
Peaxi162Scf00670g00114 Petunia axillaris HOM05D004072 ORTHO05D005933 0.0e+00 1965.7 1607 64.0
BraA03t11178Z Brassica rapa HOM05D004072 ORTHO05D005933 0.0e+00 1955.3 1692 61.6
Psat1g019120 Pisum sativum HOM05D004072 ORTHO05D005933 0.0e+00 1954.1 1358 70.8
arahy.Tifrunner.gnm1.ann1.39P5NE Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 1950.6 1729 61.0
BolC3t14626H Brassica oleracea HOM05D004072 ORTHO05D005933 0.0e+00 1950.3 1684 62.6
Carub.0004s1637 Capsella rubella HOM05D004072 ORTHO05D005933 0.0e+00 1946.4 1670 61.2
arahy.Tifrunner.gnm1.ann1.WCP5HM Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 1944.1 1645 61.2
C03p22430 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 1943.7 1686 61.5
Sp4g16960 Schrenkiella parvula HOM05D004072 ORTHO05D005933 0.0e+00 1937.9 1644 62.5
vmacro03398 Vaccinium macrocarpon HOM05D004072 ORTHO05D005933 0.0e+00 1912.5 1808 58.1
CARHR128800 Cardamine hirsuta HOM05D004072 ORTHO05D005933 0.0e+00 1829.3 1628 60.0
DCAR_003864 Daucus carota HOM05D004072 ORTHO05D005933 0.0e+00 1809.3 1713 57.3
Glyma.09G084300 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1790.0 1236 68.9
VMungo1309G2749 Vigna mungo HOM05D004072 ORTHO05D005933 0.0e+00 1790.0 1240 69.1
Zm00001eb299970 Zea mays HOM05D004072 ORTHO05D005933 0.0e+00 1785.4 1643 57.9
COL.COLO4_17682 Corchorus olitorius HOM05D004072 ORTHO05D005933 0.0e+00 1776.5 1686 57.5
SEGI_16447 Sequoiadendron giganteum HOM05D004072 ORTHO05D005933 0.0e+00 1769.6 1690 55.7
Ciclev10014084m.g Citrus clementina HOM05D004072 ORTHO05D005933 0.0e+00 1711.0 1104 73.5
BcaC01g05784 Brassica carinata HOM05D004072 ORTHO05D005933 0.0e+00 1695.6 1402 62.8
Oeu040089.1 Olea europaea HOM05D004072 ORTHO05D005933 0.0e+00 1689.9 1773 54.3
Rhsim13G0119900 Rhododendron simsii HOM05D004072 ORTHO05D005933 0.0e+00 1660.2 1473 62.4
Pp3c17_7410 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1599.7 1422 56.9
SMO271G0077 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1573.9 1438 54.1
SMO308G0046 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1572.8 1438 56.1
Pp3c14_11530 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1532.7 1653 50.4
Haze_05771 Corylus avellana HOM05D004072 ORTHO05D005933 0.0e+00 1516.1 1701 52.0
Mapoly0023s0068 Marchantia polymorpha HOM05D004072 ORTHO05D005933 0.0e+00 1475.7 1614 49.3
Glyma.15G192700 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1432.9 989 69.2
HPP92_001000 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1375.9 1028 63.5
Lj1C1164T5 Lonicera japonica HOM05D004072 ORTHO05D005933 0.0e+00 1337.0 879 72.6
Potri.011G090200 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 1322.0 1158 62.3
HPP92_000967 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1322.0 1383 55.0
TPR.G28615 Trifolium pratense HOM05D004072 ORTHO05D005933 0.0e+00 1246.9 1100 63.3
THA.LOC104813323 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 1199.9 1155 59.2
TAR626G0585 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 1101.3 957 62.6
TAR626G0996 Trochodendron aralioides HOM05D004072 ORTHO05D005933 1.2e-287 994.2 854 58.2
EL10Ac9g22637 Beta vulgaris HOM05D004072 ORTHO05D005933 5.2e-278 962.2 684 69.4
CDE02G3068 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 3.3e-256 889.8 668 62.9
Hma1.2p1_1600F.1_g293150 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 1.3e-249 867.8 558 73.7
CDE02G4494 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 4.8e-239 832.8 809 58.8
TPR.G28617 Trifolium pratense HOM05D004072 ORTHO05D005933 1.8e-225 787.7 542 67.9
Potri.011G090150 Populus trichocarpa HOM05D004072 ORTHO05D005933 1.1e-216 758.4 496 73.0
CAN.G660.43 Capsicum annuum HOM05D004072 ORTHO05D005933 1.9e-211 741.1 1608 32.8
CBR_g51063 Chara braunii HOM05D004072 ORTHO05D005933 6.3e-207 726.1 847 42.6
Cpa.g.sc17.88 Carica papaya HOM05D004072 ORTHO05D005933 2.0e-181 641.3 430 71.2
Glyma.15G192800 Glycine max HOM05D004072 ORTHO05D005933 2.3e-132 478.4 567 55.4
Os07g0148800 Oryza sativa ssp. japonica HOM05D004072 ORTHO05D005933 3.2e-126 458.0 318 69.5
RcHm_v2.0_Chr1g0313161 Rosa chinensis HOM05D004072 ORTHO05D005933 2.8e-122 444.9 273 78.0
Lj1A1163T36 Lonicera japonica HOM05D004072 ORTHO05D005933 8.4e-119 433.3 645 49.8
Medtr8g464200 Medicago truncatula HOM05D004072 ORTHO05D005933 7.4e-115 420.2 875 32.9
Rhsim07G0133800 Rhododendron simsii HOM05D004072 ORTHO05D005933 3.1e-113 414.8 699 37.3
CBR_g58028 Chara braunii HOM05D004072 ORTHO05D005933 2.1e-109 402.1 428 46.7
Cpa.g.sc17.85 Carica papaya HOM05D004072 ORTHO05D005933 9.7e-99 366.7 241 70.5
HPP92_000970 Vanilla planifolia HOM05D004072 ORTHO05D005933 2.2e-98 365.5 544 53.9
Cpa.g.sc17.87 Carica papaya HOM05D004072 ORTHO05D005933 2.5e-94 352.1 247 66.8
CSS0006934 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 5.3e-89 334.3 212 70.8
RcHm_v2.0_Chr5g0015771 Rosa chinensis HOM05D004072 ORTHO05D005933 1.2e-75 290.0 280 56.4
CSS0027246 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 7.0e-73 280.8 191 70.2
Lj1A1163T37 Lonicera japonica HOM05D004072 ORTHO05D019491 2.4e-65 255.8 153 77.1
Glyma.09G084500 Glycine max HOM05D004072 ORTHO05D005933 4.5e-64 251.5 380 47.9
CSS0044654 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 1.7e-63 249.6 178 64.0
Ca_19908_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 3.9e-63 248.4 175 64.6
CBR_g34929 Chara braunii HOM05D004072 ORTHO05D005933 4.4e-51 208.4 203 47.3
VMungo1309G0832 Vigna mungo HOM05D004072 ORTHO05D005933 3.0e-39 169.1 450 44.2
Cpa.g.sc17.83 Carica papaya HOM05D004072 ORTHO05D005933 5.2e-36 158.3 113 63.7
Lsat_1_v5_gn_1_88400 Lactuca sativa HOM05D004072 ORTHO05D005933 1.2e-35 157.1 128 57.0
MELO3C003358.2 Cucumis melo HOM05D004072 ORTHO05D005933 1.3e-34 153.7 168 49.4
HanXRQChr09g0247891 Helianthus annuus HOM05D004072 ORTHO05D005933 6.4e-26 124.8 88 65.9
vmacro01040 Vaccinium macrocarpon HOM05D000902 ORTHO05D000832 7.8e-24 117.9 214 37.9
Cpa.g.sc17.84 Carica papaya HOM05D004072 ORTHO05D019491 1.7e-23 116.7 83 66.3
Hma1.2p1_1600F.1_g293130 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 3.0e-23 115.9 63 90.5
Medtr3g010273 Medicago truncatula HOM05D004072 ORTHO05D005933 1.1e-22 114.0 93 65.6
Actinidia04621 Actinidia chinensis HOM05D004072 ORTHO05D005933 1.9e-22 113.2 104 53.8
CSS0009414 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 4.0e-20 105.5 61 78.7
CAN.G23816.1 Capsicum annuum HOM05D004072 ORTHO05D038051 5.4e-17 95.1 67 65.7
Cpa.g.sc17.80 Carica papaya HOM05D004072 ORTHO05D021063 5.4e-17 95.1 310 32.6
CSS0023750 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D021063 9.3e-17 94.4 273 38.1
PGSC0003DMG400021174 Solanum tuberosum HOM05D004072 ORTHO05D005933 2.7e-16 92.8 57 77.2
SalBow5G3729 Salvia bowleyana HOM05D004072 ORTHO05D007163 6.0e-16 91.7 98 44.9
Atru.chr2.7 Acer truncatum HOM05D004072 ORTHO05D005933 3.0e-15 89.4 168 36.9
Duzib248G0219 Durio zibethinus HOM05D004072 ORTHO05D019491 6.7e-15 88.2 95 50.5
Nn1g03421 Nelumbo nucifera HOM05D004072 ORTHO05D019491 4.3e-14 85.5 51 74.5
Actinidia36004 Actinidia chinensis HOM05D004072 ORTHO05D038051 1.1e-12 80.9 56 66.1
Atru.chr10.903 Acer truncatum HOM05D004072 ORTHO05D021063 3.1e-12 79.3 275 34.5
QL05p053334 Quercus lobata HOM05D004072 ORTHO05D005933 6.9e-12 78.2 41 80.5
CARHR128810 Cardamine hirsuta HOM05D004072 ORTHO05D019491 2.6e-11 76.3 44 72.7
Lsat_1_v5_gn_7_25100 Lactuca sativa HOM05D003161 ORTHO05D005173 2.2e-10 73.2 40 75.0
Lsat_1_v5_gn_6_117121 Lactuca sativa HOM05D004072 ORTHO05D001686 1.9e-09 70.1 61 57.4
CBR_g34931 Chara braunii HOM05D000019 ORTHO05D001702 7.1e-09 68.2 76 44.7
Lsat_1_v5_gn_6_30620 Lactuca sativa HOM05D000062 ORTHO05D013119 9.3e-09 67.8 165 30.3
SalBow5G4417 Salvia bowleyana HOM05D004072 ORTHO05D007163 9.3e-09 67.8 95 37.9
CSS0034048 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D021063 1.6e-08 67.0 308 30.2
Lsat_1_v5_gn_9_121081 Lactuca sativa HOM05D004072 ORTHO05D001686 2.7e-08 66.2 70 50.0
Lsat_1_v5_gn_7_40200 Lactuca sativa HOM05D000062 ORTHO05D013119 7.9e-08 64.7 162 33.3
Lsat_1_v5_gn_5_73260 Lactuca sativa HOM05D000371 ORTHO05D006177 6.7e-07 61.6 42 61.9


User provided reference genes

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