Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc24g0000810 Simmondsia chinensis HOM05D006332 ORTHO05D008421 0.0e+00 1177.5 592 100.0
EL10Ac8g20347 Beta vulgaris HOM05D006332 ORTHO05D008421 1.9e-134 483.8 601 48.1
Dinv07538 Davidia involucrata HOM05D006332 ORTHO05D008421 2.5e-134 483.4 609 47.1
Lj1C1207T6 Lonicera japonica HOM05D006332 ORTHO05D008421 7.2e-134 481.9 604 47.5
TAR629G2846 Trochodendron aralioides HOM05D006332 ORTHO05D008421 1.0e-132 478.0 610 46.9
CiPaw.09G057500 Carya illinoinensis HOM05D006332 ORTHO05D008421 5.1e-132 475.7 608 45.9
Actinidia01892 Actinidia chinensis HOM05D006332 ORTHO05D008421 6.7e-132 475.3 616 45.9
AUR62016979 Chenopodium quinoa HOM05D006332 ORTHO05D008421 8.8e-132 474.9 595 47.6
GSVIVG01002030001 Vitis vinifera HOM05D006332 ORTHO05D008421 8.8e-132 474.9 613 46.8
Cc02_g13080 Coffea canephora HOM05D006332 ORTHO05D008421 1.1e-131 474.6 607 45.8
Cpa.g.sc27.66 Carica papaya HOM05D006332 ORTHO05D008421 5.7e-131 472.2 608 45.6
MSTRG.13186 Avicennia marina HOM05D006332 ORTHO05D008421 2.8e-130 469.9 618 47.1
Duzib235G1125 Durio zibethinus HOM05D006332 ORTHO05D008421 6.3e-130 468.8 613 46.2
Hma1.2p1_0881F.1_g231970 Hydrangea macrophylla HOM05D006332 ORTHO05D008421 3.1e-129 466.5 605 46.1
Oeu053924.1 Olea europaea HOM05D006332 ORTHO05D008421 7.0e-129 465.3 618 45.8
Gohir.D06G130900 Gossypium hirsutum HOM05D006332 ORTHO05D008421 9.1e-129 464.9 613 44.9
AUR62014792 Chenopodium quinoa HOM05D006332 ORTHO05D008421 1.2e-128 464.5 599 47.1
Gorai.010G152800 Gossypium raimondii HOM05D006332 ORTHO05D008421 1.5e-128 464.2 615 45.0
Gohir.A06G126100 Gossypium hirsutum HOM05D006332 ORTHO05D008421 2.6e-128 463.4 615 44.9
Haze_06500 Corylus avellana HOM05D006332 ORTHO05D008421 3.5e-128 463.0 618 43.9
QL05p039635 Quercus lobata HOM05D006332 ORTHO05D008421 1.3e-127 461.1 615 44.6
Prupe.4G044000 Prunus persica HOM05D006332 ORTHO05D008421 1.1e-126 458.0 614 45.0
Ca_18532_v3 Cicer arietinum L. HOM05D006332 ORTHO05D008421 2.1e-125 453.8 605 44.6
Thecc.06G190700 Theobroma cacao HOM05D006332 ORTHO05D008421 2.1e-125 453.8 613 44.9
Migut.H01511 Erythranthe guttata HOM05D006332 ORTHO05D008421 2.7e-125 453.4 620 45.2
PGSC0003DMG400022831 Solanum tuberosum HOM05D006332 ORTHO05D008421 2.7e-125 453.4 616 45.1
Duzib160G0593 Durio zibethinus HOM05D006332 ORTHO05D008421 3.6e-125 453.0 612 45.1
Glyma.07G195200 Glycine max HOM05D006332 ORTHO05D008421 6.1e-125 452.2 603 45.6
Medtr4g088960 Medicago truncatula HOM05D006332 ORTHO05D008421 1.0e-124 451.4 594 45.3
Phvul.002G227700 Phaseolus vulgaris HOM05D006332 ORTHO05D008421 1.0e-124 451.4 600 45.0
Solyc10g008990.4 Solanum lycopersicum HOM05D006332 ORTHO05D008421 3.9e-124 449.5 613 45.0
CsaV3_1G012160 Cucumis sativus L. HOM05D006332 ORTHO05D008421 5.2e-124 449.1 609 44.0
Lj4g0020818 Lotus japonicus HOM05D006332 ORTHO05D008421 5.2e-124 449.1 598 45.5
PGR004G2698 Punica granatum HOM05D006332 ORTHO05D008421 6.7e-124 448.7 608 44.6
Cfa000416 Carpinus fangiana HOM05D006332 ORTHO05D008421 8.8e-124 448.4 310 70.0
ClCG03G005920 Citrullus lanatus HOM05D006332 ORTHO05D008421 1.5e-123 447.6 610 43.9
Sed0003237 Sechium edule HOM05D006332 ORTHO05D008421 1.5e-123 447.6 609 43.2
ATR0680G340 Amborella trichopoda HOM05D006332 ORTHO05D008421 3.3e-123 446.4 607 44.6
Aqoxy1G02544 Aquilegia oxysepala HOM05D006332 ORTHO05D008421 3.3e-123 446.4 617 43.3
Glyma.13G181100 Glycine max HOM05D006332 ORTHO05D008421 4.4e-123 446.0 606 44.6
Nitab4.5_0003942g0020 Nicotiana tabacum HOM05D006332 ORTHO05D008421 5.7e-123 445.7 595 45.7
arahy.Tifrunner.gnm1.ann1.I941VF Arachis hypogaea HOM05D006332 ORTHO05D008421 7.4e-123 445.3 611 44.4
Manes.16G025600 Manihot esculenta HOM05D006332 ORTHO05D008421 7.4e-123 445.3 610 44.9
Potri.004G040500 Populus trichocarpa HOM05D006332 ORTHO05D008421 1.3e-122 444.5 609 44.3
MELO3C002589.2 Cucumis melo HOM05D006332 ORTHO05D008421 1.7e-122 444.1 608 43.4
arahy.Tifrunner.gnm1.ann1.5TP18E Arachis hypogaea HOM05D006332 ORTHO05D008421 2.2e-122 443.7 611 44.0
Peaxi162Scf00530g00823 Petunia axillaris HOM05D006332 ORTHO05D008421 2.8e-122 443.4 593 45.7
TPR.G12057 Trifolium pratense HOM05D006332 ORTHO05D008421 3.7e-122 443.0 607 44.3
VMungo0251G1219 Vigna mungo HOM05D006332 ORTHO05D008421 4.8e-122 442.6 600 44.3
TWI38G1702 Tripterygium wilfordii HOM05D006332 ORTHO05D008421 1.4e-121 441.0 612 44.1
MD05G1316100 Malus domestica HOM05D006332 ORTHO05D008421 1.8e-121 440.7 620 43.4
COL.COLO4_31500 Corchorus olitorius HOM05D006332 ORTHO05D008421 5.3e-121 439.1 630 43.5
Psat7g112800 Pisum sativum HOM05D006332 ORTHO05D008421 7.0e-121 438.7 606 43.7
RcHm_v2.0_Chr5g0008031 Rosa chinensis HOM05D006332 ORTHO05D008421 1.2e-120 438.0 614 43.6
TWI63G1670 Tripterygium wilfordii HOM05D006332 ORTHO05D008421 2.0e-120 437.2 635 42.8
MD10G1296600 Malus domestica HOM05D006332 ORTHO05D008421 2.6e-120 436.8 305 71.1
PSO063G3883 Papaver somniferum HOM05D006332 ORTHO05D008421 2.6e-120 436.8 615 42.8
CANSAT35G2021 Cannabis sativa HOM05D006332 ORTHO05D008421 1.0e-119 434.9 607 44.0
Eucgr.D00641 Eucalyptus grandis HOM05D006332 ORTHO05D008421 1.0e-119 434.9 305 71.5
Lalb_Chr16g0383661 Lupinus albus HOM05D006332 ORTHO05D008421 1.0e-119 434.9 304 70.1
FvH4_3g04870 Fragaria vesca HOM05D006332 ORTHO05D008421 1.3e-119 434.5 616 43.0
FAN16G1437 Fragaria x ananassa HOM05D006332 ORTHO05D008421 2.2e-119 433.7 614 43.5
FAN21G2488 Fragaria x ananassa HOM05D003523 ORTHO05D004493 2.9e-119 433.3 305 69.8
PSO782G1256 Papaver somniferum HOM05D006332 ORTHO05D008421 1.9e-118 430.6 615 42.4
THA.LOC104817534 Tarenaya hassleriana HOM05D006332 ORTHO05D008421 4.2e-118 429.5 610 43.1
FAN11G2101 Fragaria x ananassa HOM05D003523 ORTHO05D004493 5.5e-118 429.1 305 68.9
Gorai.011G026200 Gossypium raimondii HOM05D006332 ORTHO05D008421 9.4e-118 428.3 613 43.1
Gohir.A10G024200 Gossypium hirsutum HOM05D006332 ORTHO05D008421 1.2e-117 427.9 613 43.1
CSS0022240 Camellia sinensis var. sinensis HOM05D006332 ORTHO05D008421 1.6e-117 427.6 299 71.2
Hma1.2p1_0126F.1_g059220 Hydrangea macrophylla HOM05D006332 ORTHO05D008421 2.1e-117 427.2 594 45.3
Gohir.D10G024900 Gossypium hirsutum HOM05D006332 ORTHO05D008421 1.8e-116 424.1 613 42.6
ECA248G3961 Erigeron canadensis HOM05D006332 ORTHO05D008421 8.8e-116 421.8 300 68.3
Nitab4.5_0009738g0010 Nicotiana tabacum HOM05D006332 ORTHO05D008421 1.2e-115 421.4 305 71.1
HanXRQChr04g0124141 Helianthus annuus HOM05D006332 ORTHO05D008421 1.5e-115 421.0 607 41.7
Nn6g34413 Nelumbo nucifera HOM05D006332 ORTHO05D008421 4.4e-115 419.5 305 68.2
CDE08G0172 Ceratophyllum demersum HOM05D006332 ORTHO05D008421 9.8e-115 418.3 304 66.4
HanXRQChr01g0003951 Helianthus annuus HOM05D006332 ORTHO05D008421 1.7e-114 417.5 305 67.5
ECA236G3091 Erigeron canadensis HOM05D006332 ORTHO05D008421 4.8e-114 416.0 605 41.3
Nn1g04020 Nelumbo nucifera HOM05D006332 ORTHO05D008421 4.8e-114 416.0 572 43.9
Hma1.2p1_0881F.1_g231960 Hydrangea macrophylla HOM05D006332 ORTHO05D008421 2.7e-112 410.2 551 45.7
AL4G47550 Arabidopsis lyrata HOM05D006332 ORTHO05D008421 4.5e-112 409.5 606 40.9
HPP92_001753 Vanilla planifolia HOM05D006332 ORTHO05D008421 5.9e-112 409.1 306 66.0
AT2G47960 Arabidopsis thaliana HOM05D006332 ORTHO05D008421 1.3e-111 407.9 606 40.8
Sp4g29880 Schrenkiella parvula HOM05D006332 ORTHO05D008421 1.7e-111 407.5 608 40.3
BcaC02g12534 Brassica carinata HOM05D006332 ORTHO05D008421 2.9e-111 406.8 610 40.2
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 2.9e-111 406.8 610 40.2
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 2.9e-111 406.8 610 40.2
Carub.0004s3069 Capsella rubella HOM05D006332 ORTHO05D008421 2.9e-111 406.8 609 40.2
Zm00001eb044550 Zea mays HOM05D006332 ORTHO05D008421 3.2e-110 403.3 305 66.6
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 7.2e-110 402.1 610 39.8
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 7.2e-110 402.1 610 39.8
Thhalv10018568m.g Eutrema salsugineum HOM05D006332 ORTHO05D008421 9.4e-110 401.7 609 39.9
CARHR143350 Cardamine hirsuta HOM05D006332 ORTHO05D008421 2.7e-109 400.2 591 41.3
BcaB02g08727 Brassica carinata HOM05D006332 ORTHO05D008421 4.7e-109 399.4 611 40.1
SGA_v2.0_scaffold49G18281 Striga asiatica HOM05D006332 ORTHO05D008421 2.3e-108 397.1 566 44.0
Ciclev10015324m.g Citrus clementina HOM05D006332 ORTHO05D008421 8.8e-108 395.2 614 40.1
Sabra04G0025000 Salix brachista HOM05D006332 ORTHO05D008421 7.5e-107 392.1 669 39.6
DCAR_004087 Daucus carota HOM05D006332 ORTHO05D008421 9.8e-107 391.7 563 42.5
CAN.G413.15 Capsicum annuum HOM05D006332 ORTHO05D008421 3.1e-105 386.7 290 68.3
Duzib192G0908 Durio zibethinus HOM05D006332 ORTHO05D008421 1.2e-104 384.8 305 65.9
MBI17_g03748_MAGBIO Magnolia biondii HOM05D006332 ORTHO05D008421 1.6e-104 384.4 275 70.2
unitig_8.g3355 Utricularia gibba HOM05D006332 ORTHO05D008421 6.1e-101 372.5 602 41.0
Lsat_1_v5_gn_7_19001 Lactuca sativa HOM05D006332 ORTHO05D008421 2.3e-100 370.5 550 41.8
Lsat_1_v5_gn_1_127821 Lactuca sativa HOM05D006332 ORTHO05D008421 5.4e-97 359.4 597 38.2
Hund21245 Selenicereus undatus HOM05D006332 ORTHO05D008421 1.6e-96 357.8 598 40.3
Aa31LG1G29380 Aethionema arabicum HOM05D006332 ORTHO05D008421 7.3e-94 349.0 609 37.9
AagrBONN_evm.TU.Sc2ySwM_344.1820 Anthoceros agrestis HOM05D006332 ORTHO05D008421 8.1e-85 318.9 308 51.6
Mapoly0122s0006 Marchantia polymorpha HOM05D006332 ORTHO05D008421 2.3e-84 317.4 307 49.5
SMO364G0571 Selaginella moellendorffii HOM05D006332 ORTHO05D008421 1.1e-81 308.5 293 51.9
Pp3c1_28670 Physcomitrium patens HOM05D006332 ORTHO05D008421 5.4e-81 306.2 307 49.8
Atru.chr10.1934 Acer truncatum HOM05D006332 ORTHO05D008421 9.5e-78 295.4 497 39.8
SMO364G0067 Selaginella moellendorffii HOM05D006332 ORTHO05D008421 2.1e-77 294.3 292 50.7
Nitab4.5_0009738g0020 Nicotiana tabacum HOM05D006332 ORTHO05D008421 7.3e-62 242.7 277 50.5
Sopen10g004770 Solanum pennellii HOM05D006332 ORTHO05D008421 3.0e-55 220.7 176 63.1
CBR_g24248 Chara braunii HOM05D006332 ORTHO05D008421 5.1e-55 219.9 318 39.6
SHI01800 Sapria himalayana HOM05D006332 ORTHO05D008421 7.3e-54 216.1 171 66.1
Gohir.A10G024325 Gossypium hirsutum HOM05D006332 ORTHO05D008421 3.1e-52 210.7 414 36.0
PRCOL_00003805 Prasinoderma coloniale HOM05D006332 ORTHO05D008421 1.2e-35 155.6 319 32.6
Ciclev10009862m.g Citrus clementina HOM05D006332 ORTHO05D008421 2.5e-30 137.9 103 67.0
Gohir.A10G024350 Gossypium hirsutum HOM05D006332 ORTHO05D008421 5.7e-30 136.7 124 56.5
SHI01798 Sapria himalayana HOM05D000002 ORTHO05D000001 6.3e-29 133.3 159 47.8
Sc02g0001270 Simmondsia chinensis HOM05D006485 ORTHO05D006108 9.1e-20 102.8 82 70.7
TPR.G24681 Trifolium pratense HOM05D006332 ORTHO05D001923 2.0e-19 101.7 68 70.6
Nitab4.5_0009738g0030 Nicotiana tabacum HOM05D006332 ORTHO05D008421 1.5e-14 85.5 91 50.5
Atru.chr10.1933 Acer truncatum HOM05D006332 ORTHO05D008421 2.2e-13 81.6 80 43.8
CDE02G4141 Ceratophyllum demersum HOM05D006332 ORTHO05D008421 1.1e-09 69.3 41 80.5
PSO017G7020 Papaver somniferum HOM05D006332 ORTHO05D000676 9.4e-09 66.2 74 37.8


User provided reference genes

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