Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc24g0000190 Simmondsia chinensis HOM05D003415 ORTHO05D001594 3.3e-121 438.3 214 100.0
Sc24g0003510 Simmondsia chinensis HOM05D003415 ORTHO05D001594 3.3e-12 76.3 75 58.7
Actinidia09476 Actinidia chinensis HOM05D003415 ORTHO05D001594 2.0e-09 67.0 76 52.6
Lalb_Chr12g0209961 Lupinus albus HOM05D003415 ORTHO05D001594 2.6e-09 66.6 108 44.4
Ca_17420_v3 Cicer arietinum L. HOM05D003415 ORTHO05D001594 7.6e-09 65.1 76 55.3
Haze_24816 Corylus avellana HOM05D003415 ORTHO05D001594 9.9e-09 64.7 76 52.6
Lalb_Chr19g0125701 Lupinus albus HOM05D003415 ORTHO05D001594 9.9e-09 64.7 75 52.0
CiPaw.04G104600 Carya illinoinensis HOM05D003415 ORTHO05D001594 1.3e-08 64.3 76 51.3
Lalb_Chr07g0194281 Lupinus albus HOM05D003415 ORTHO05D001594 1.3e-08 64.3 76 53.9
Glyma.03G064200 Glycine max HOM05D003415 ORTHO05D001594 1.7e-08 63.9 78 52.6
CANSAT01G2234 Cannabis sativa HOM05D003415 ORTHO05D001594 2.2e-08 63.5 76 50.0
EL10Ac7g17856 Beta vulgaris HOM05D003415 ORTHO05D001594 2.9e-08 63.2 74 51.4
CSS0028538 Camellia sinensis var. sinensis HOM05D003415 ORTHO05D001594 2.9e-08 63.2 76 53.9
Ca_26921_v3 Cicer arietinum L. HOM05D003415 ORTHO05D001594 3.8e-08 62.8 76 53.9
Lj2A1128G42 Lonicera japonica HOM05D003415 ORTHO05D001594 4.9e-08 62.4 76 50.0
Psat3g147480 Pisum sativum HOM05D003415 ORTHO05D001594 6.4e-08 62.0 76 52.6
QL05p058688 Quercus lobata HOM05D003415 ORTHO05D001594 6.4e-08 62.0 76 51.3
QL09p053183 Quercus lobata HOM05D003415 ORTHO05D001594 6.4e-08 62.0 76 51.3
arahy.Tifrunner.gnm1.ann1.FUXK5I Arachis hypogaea HOM05D003415 ORTHO05D001594 1.1e-07 61.2 76 52.6
CiPaw.03G148100 Carya illinoinensis HOM05D003415 ORTHO05D001594 1.1e-07 61.2 76 51.3
Prupe.8G201300 Prunus persica HOM05D003415 ORTHO05D001594 1.1e-07 61.2 75 50.7
PGR083G1672 Punica granatum HOM05D003415 ORTHO05D001594 1.1e-07 61.2 73 52.1
Glyma.16G094900 Glycine max HOM05D003415 ORTHO05D001594 1.4e-07 60.8 78 51.3
Gohir.A07G157400 Gossypium hirsutum HOM05D003415 ORTHO05D001594 1.4e-07 60.8 73 54.8
Gohir.D07G163800 Gossypium hirsutum HOM05D003415 ORTHO05D001594 1.4e-07 60.8 73 54.8
Gorai.001G187500 Gossypium raimondii HOM05D003415 ORTHO05D001594 1.4e-07 60.8 73 54.8
Lj3g0005113 Lotus japonicus HOM05D003415 ORTHO05D001594 1.4e-07 60.8 76 53.9
Actinidia23718 Actinidia chinensis HOM05D003415 ORTHO05D001594 1.9e-07 60.5 76 50.0
Cpa.g.sc8.139 Carica papaya HOM05D003415 ORTHO05D001594 1.9e-07 60.5 75 50.7
Dinv19191 Davidia involucrata HOM05D003415 ORTHO05D001594 1.9e-07 60.5 81 51.9
Atru.chr9.2214 Acer truncatum HOM05D003415 ORTHO05D001594 2.4e-07 60.1 75 52.0
AUR62008928 Chenopodium quinoa HOM05D003415 ORTHO05D001594 2.4e-07 60.1 70 51.4
Hma1.2p1_0226F.1_g095560 Hydrangea macrophylla HOM05D003415 ORTHO05D001594 3.2e-07 59.7 116 38.8
Actinidia30068 Actinidia chinensis HOM05D003415 ORTHO05D001594 4.2e-07 59.3 76 48.7
Psat0s4384g0080 Pisum sativum HOM05D003415 ORTHO05D001594 4.2e-07 59.3 76 55.3
Manes.12G046200 Manihot esculenta HOM05D003415 ORTHO05D001594 5.4e-07 58.9 75 50.7
Duzib211G0076 Durio zibethinus HOM05D003415 ORTHO05D001594 7.1e-07 58.5 73 53.4
Potri.002G244000 Populus trichocarpa HOM05D003415 ORTHO05D001594 7.1e-07 58.5 75 48.0
Sabra02G0185700 Salix brachista HOM05D003415 ORTHO05D001594 7.1e-07 58.5 75 48.0
Sc17g0002270 Simmondsia chinensis HOM05D003415 ORTHO05D001594 7.1e-07 58.5 119 41.2
Thecc.01G224000 Theobroma cacao HOM05D003415 ORTHO05D001594 7.1e-07 58.5 73 53.4
arahy.Tifrunner.gnm1.ann1.NLS2AK Arachis hypogaea HOM05D003415 ORTHO05D001594 9.3e-07 58.2 76 51.3
Eucgr.H00791 Eucalyptus grandis HOM05D003415 ORTHO05D001594 9.3e-07 58.2 75 48.0
ClCG07G001990 Citrullus lanatus HOM05D003415 ORTHO05D001594 1.2e-06 57.8 76 50.0
MELO3C024046.2 Cucumis melo HOM05D003415 ORTHO05D001594 1.2e-06 57.8 76 50.0
MD05G1173900 Malus domestica HOM05D003415 ORTHO05D001594 1.2e-06 57.8 117 38.5
MD10G1161800 Malus domestica HOM05D003415 ORTHO05D001594 1.2e-06 57.8 117 39.3
TPR.G14528 Trifolium pratense HOM05D003415 ORTHO05D001594 1.2e-06 57.8 76 50.0
CsaV3_3G029960 Cucumis sativus L. HOM05D003415 ORTHO05D001594 1.6e-06 57.4 76 50.0
FAN27G2123 Fragaria x ananassa HOM05D003415 ORTHO05D001594 1.6e-06 57.4 75 49.3
Lalb_Chr01g0022271 Lupinus albus HOM05D003415 ORTHO05D001594 1.6e-06 57.4 72 48.6
RcHm_v2.0_Chr6g0284531 Rosa chinensis HOM05D003415 ORTHO05D001594 1.6e-06 57.4 76 51.3
Duzib138G0574 Durio zibethinus HOM05D003415 ORTHO05D001594 2.1e-06 57.0 73 53.4
CSS0043801 Camellia sinensis var. sinensis HOM05D003415 ORTHO05D001594 2.7e-06 56.6 77 50.6
Cc03_g04120 Coffea canephora HOM05D003415 ORTHO05D001594 2.7e-06 56.6 73 52.1
HanXRQChr01g0015201 Helianthus annuus HOM05D003415 ORTHO05D001594 2.7e-06 56.6 75 46.7
SalBow2G2780 Salvia bowleyana HOM05D003415 ORTHO05D001594 2.7e-06 56.6 81 49.4
Sed0000990 Sechium edule HOM05D003415 ORTHO05D001594 2.7e-06 56.6 76 50.0
DCAR_004730 Daucus carota HOM05D003415 ORTHO05D001594 3.5e-06 56.2 76 44.7
Duzib133G1316 Durio zibethinus HOM05D003415 ORTHO05D001594 3.5e-06 56.2 75 52.0
Gohir.A07G200600 Gossypium hirsutum HOM05D003415 ORTHO05D001594 3.5e-06 56.2 73 52.1
Gohir.A08G195150 Gossypium hirsutum HOM05D003415 ORTHO05D001594 3.5e-06 56.2 76 50.0
Gohir.D07G206900 Gossypium hirsutum HOM05D003415 ORTHO05D001594 3.5e-06 56.2 73 52.1
Gohir.D08G212628 Gossypium hirsutum HOM05D003415 ORTHO05D001594 3.5e-06 56.2 76 50.0
Gorai.001G233300 Gossypium raimondii HOM05D003415 ORTHO05D001594 3.5e-06 56.2 73 52.1
Gorai.004G226300 Gossypium raimondii HOM05D003415 ORTHO05D001594 3.5e-06 56.2 76 50.0
FvH4_2g18790 Fragaria vesca HOM05D003415 ORTHO05D001594 4.6e-06 55.8 75 49.3
FAN24G0460 Fragaria x ananassa HOM05D003415 ORTHO05D001594 4.6e-06 55.8 75 49.3
vmacro14746 Vaccinium macrocarpon HOM05D003415 ORTHO05D001594 4.6e-06 55.8 76 48.7
arahy.Tifrunner.gnm1.ann1.M88YV2 Arachis hypogaea HOM05D003415 ORTHO05D001594 6.0e-06 55.5 73 50.7
arahy.Tifrunner.gnm1.ann1.NIIH12 Arachis hypogaea HOM05D003415 ORTHO05D001594 6.0e-06 55.5 73 50.7
Sed0004220 Sechium edule HOM05D003415 ORTHO05D001594 6.0e-06 55.5 76 48.7
THA.LOC104802669 Tarenaya hassleriana HOM05D003415 ORTHO05D001594 6.0e-06 55.5 96 41.7
VMungo1383G3594 Vigna mungo HOM05D003415 ORTHO05D001594 6.0e-06 55.5 76 48.7
Cc01_g16890 Coffea canephora HOM05D003415 ORTHO05D001594 7.8e-06 55.1 72 48.6


User provided reference genes

Program Settings