Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc23g0007020 Simmondsia chinensis HOM05D004036 ORTHO05D004576 2.0e-65 252.3 130 100.0
Hund25658 Selenicereus undatus HOM05D004036 ORTHO05D004576 2.2e-27 125.9 125 54.4
EL10Ac2g02537 Beta vulgaris HOM05D004036 ORTHO05D004576 2.9e-27 125.6 125 57.6
Ah.12g063370 Amaranthus hybridus HOM05D004036 ORTHO05D004576 3.2e-26 122.1 125 56.8
AUR62032381 Chenopodium quinoa HOM05D004036 ORTHO05D004576 2.8e-22 109.0 125 51.2
AUR62024838 Chenopodium quinoa HOM05D004036 ORTHO05D004576 3.6e-22 108.6 125 51.2
Hma1.2p1_0175F.1_g077210 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 2.4e-21 105.9 130 46.9
CSS0014753 Camellia sinensis var. sinensis HOM05D004036 ORTHO05D004576 4.0e-21 105.1 152 44.1
CAN.G21.9 Capsicum annuum HOM05D004036 ORTHO05D004576 5.2e-21 104.8 140 46.4
Hma1.2p1_0003F.1_g003650 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 1.2e-20 103.6 137 47.4
vmacro05446 Vaccinium macrocarpon HOM05D004036 ORTHO05D004576 3.4e-20 102.1 150 43.3
Nitab4.5_0006579g0060 Nicotiana tabacum HOM05D004036 ORTHO05D004576 4.4e-20 101.7 141 44.0
PGSC0003DMG400033628 Solanum tuberosum HOM05D004036 ORTHO05D004576 4.4e-20 101.7 138 43.5
Lsat_1_v5_gn_3_108141 Lactuca sativa HOM05D004036 ORTHO05D004576 7.6e-20 100.9 128 45.3
Cc08_g08300 Coffea canephora HOM05D004036 ORTHO05D004576 1.3e-19 100.1 149 42.3
Duzib150G0431 Durio zibethinus HOM05D004036 ORTHO05D004576 1.3e-19 100.1 147 43.5
Nitab4.5_0000125g0270 Nicotiana tabacum HOM05D004036 ORTHO05D004576 1.3e-19 100.1 141 43.3
Peaxi162Scf00105g01426 Petunia axillaris HOM05D004036 ORTHO05D004576 1.7e-19 99.8 140 42.9
CiPaw.08G015700 Carya illinoinensis HOM05D004036 ORTHO05D004576 8.4e-19 97.4 148 42.6
COL.COLO4_24066 Corchorus olitorius HOM05D004036 ORTHO05D004576 1.4e-18 96.7 145 44.1
Haze_21623 Corylus avellana HOM05D004036 ORTHO05D004576 1.9e-18 96.3 142 43.0
FAN15G1681 Fragaria x ananassa HOM05D004036 ORTHO05D004576 1.9e-18 96.3 146 41.1
Sopen08g021750 Solanum pennellii HOM05D004036 ORTHO05D004576 3.2e-18 95.5 138 40.6
Oeu045176.1 Olea europaea HOM05D004036 ORTHO05D004576 4.2e-18 95.1 153 41.2
Solyc08g067810.3 Solanum lycopersicum HOM05D004036 ORTHO05D004576 4.2e-18 95.1 138 40.6
FAN20G2367 Fragaria x ananassa HOM05D004036 ORTHO05D004576 5.4e-18 94.7 148 42.6
TAR624G0048 Trochodendron aralioides HOM05D004036 ORTHO05D004576 5.4e-18 94.7 157 39.5
FAN27G0504 Fragaria x ananassa HOM05D004036 ORTHO05D004576 7.1e-18 94.4 148 41.9
Manes.16G068200 Manihot esculenta HOM05D004036 ORTHO05D004576 7.1e-18 94.4 140 42.1
Gorai.010G053700 Gossypium raimondii HOM05D004036 ORTHO05D004576 1.2e-17 93.6 146 43.8
FvH4_2g30160 Fragaria vesca HOM05D004036 ORTHO05D004576 1.6e-17 93.2 148 41.9
FAN24G0425 Fragaria x ananassa HOM05D004036 ORTHO05D004576 1.6e-17 93.2 148 41.9
Manes.03G064800 Manihot esculenta HOM05D004036 ORTHO05D004576 1.6e-17 93.2 147 40.8
Cfa013210 Carpinus fangiana HOM05D004036 ORTHO05D004576 3.5e-17 92.0 142 40.8
Gohir.D06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.5e-17 92.0 146 39.7
Gohir.A05G010600 Gossypium hirsutum HOM05D004036 ORTHO05D004576 6.0e-17 91.3 133 41.4
Gorai.009G011700 Gossypium raimondii HOM05D004036 ORTHO05D004576 6.0e-17 91.3 133 41.4
Gohir.A06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.3e-16 90.1 146 41.8
RcHm_v2.0_Chr6g0312751 Rosa chinensis HOM05D004036 ORTHO05D004576 1.3e-16 90.1 148 41.9
Gohir.D05G011350 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.7e-16 89.7 127 43.3
HanXRQChr13g0409481 Helianthus annuus HOM05D004036 ORTHO05D004576 2.3e-16 89.4 129 42.6
QL12p031289 Quercus lobata HOM05D004036 ORTHO05D004576 2.3e-16 89.4 145 43.4
Atru.chr7.2325 Acer truncatum HOM05D004036 ORTHO05D004576 3.0e-16 89.0 145 42.1
Gohir.A11G185400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.0e-16 89.0 133 40.6
Gohir.A12G126300 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.0e-16 89.0 133 40.6
Duzib187G1985 Durio zibethinus HOM05D004036 ORTHO05D004576 3.9e-16 88.6 149 40.3
Gohir.D12G195700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.9e-16 88.6 133 40.6
DCAR_003061 Daucus carota HOM05D004036 ORTHO05D004576 5.1e-16 88.2 149 39.6
Gohir.D05G335100 Gossypium hirsutum HOM05D004036 ORTHO05D004576 5.1e-16 88.2 133 40.6
Gorai.008G052900 Gossypium raimondii HOM05D004036 ORTHO05D004576 6.6e-16 87.8 135 39.3
Potri.006G246600 Populus trichocarpa HOM05D004036 ORTHO05D004576 6.6e-16 87.8 139 43.2
TWI34G1922 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 6.6e-16 87.8 142 40.1
Ciclev10009480m.g Citrus clementina HOM05D004036 ORTHO05D004576 8.7e-16 87.4 138 42.8
ECA240G1837 Erigeron canadensis HOM05D004036 ORTHO05D004576 8.7e-16 87.4 136 39.7
Gohir.A07G032200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 8.7e-16 87.4 131 41.2
Gohir.A08G237500 Gossypium hirsutum HOM05D004036 ORTHO05D004576 8.7e-16 87.4 131 41.2
TAR626G0352 Trochodendron aralioides HOM05D004036 ORTHO05D004576 8.7e-16 87.4 157 38.2
MELO3C003669.2 Cucumis melo HOM05D004036 ORTHO05D004576 1.1e-15 87.0 146 38.4
TWI63G0992 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 1.1e-15 87.0 139 41.0
CANSAT56G2568 Cannabis sativa HOM05D004036 ORTHO05D004576 1.5e-15 86.7 128 42.2
Gohir.D09G023175 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.5e-15 86.7 133 39.8
Prupe.1G466700 Prunus persica HOM05D004036 ORTHO05D004576 1.5e-15 86.7 147 39.5
Gohir.D01G158400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.9e-15 86.3 127 41.7
Dinv35883 Davidia involucrata HOM05D004036 ORTHO05D004576 2.5e-15 85.9 114 49.1
Gohir.A12G241700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.5e-15 85.9 133 39.8
Gohir.D09G022200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.5e-15 85.9 133 39.1
Thecc.09G144100 Theobroma cacao HOM05D004036 ORTHO05D004576 2.5e-15 85.9 148 40.5
Aqoxy7G01846 Aquilegia oxysepala HOM05D004036 ORTHO05D004576 3.3e-15 85.5 120 47.5
SGA_v2.0_scaffold163G38098 Striga asiatica HOM05D004036 ORTHO05D004576 3.3e-15 85.5 137 42.3
QL02p086217 Quercus lobata HOM05D004036 ORTHO05D004576 5.6e-15 84.7 154 37.0
DCAR_007682 Daucus carota HOM05D004036 ORTHO05D004576 9.6e-15 84.0 77 58.4
Sabra06G0192900 Salix brachista HOM05D004036 ORTHO05D004576 9.6e-15 84.0 143 41.3
Eucgr.C01818 Eucalyptus grandis HOM05D004036 ORTHO05D004576 1.6e-14 83.2 150 38.0
Gorai.004G151900 Gossypium raimondii HOM05D004036 ORTHO05D004576 1.6e-14 83.2 133 37.6
Medtr1g011280 Medicago truncatula HOM05D004036 ORTHO05D004576 2.1e-14 82.8 135 40.0
CsaV3_3G046690 Cucumis sativus L. HOM05D004036 ORTHO05D004576 2.8e-14 82.4 144 38.2
Glyma.14G129200 Glycine max HOM05D004036 ORTHO05D004576 2.8e-14 82.4 144 38.2
Sabra18G0035300 Salix brachista HOM05D004036 ORTHO05D004576 2.8e-14 82.4 140 44.3
Sed0023915 Sechium edule HOM05D004036 ORTHO05D004576 4.8e-14 81.6 146 39.0
Glyma.17G203900 Glycine max HOM05D004036 ORTHO05D004576 8.1e-14 80.9 146 39.7
Psat6g031000 Pisum sativum HOM05D004036 ORTHO05D004576 8.1e-14 80.9 139 38.1
ClCG05G017210 Citrullus lanatus HOM05D004036 ORTHO05D004576 1.4e-13 80.1 144 38.2
Phvul.001G055700 Phaseolus vulgaris HOM05D004036 ORTHO05D004576 1.4e-13 80.1 146 37.0
CiPaw.03G235800 Carya illinoinensis HOM05D004036 ORTHO05D004576 1.8e-13 79.7 147 40.1
Actinidia14638 Actinidia chinensis HOM05D004036 ORTHO05D004576 2.4e-13 79.3 103 44.7
MSTRG.14001 Avicennia marina HOM05D004036 ORTHO05D004576 2.4e-13 79.3 149 36.9
Nn2g11835 Nelumbo nucifera HOM05D004036 ORTHO05D004576 3.1e-13 79.0 157 40.8
TPR.G20095 Trifolium pratense HOM05D004036 ORTHO05D004576 3.1e-13 79.0 138 35.5
MSTRG.1647 Avicennia marina HOM05D004036 ORTHO05D004576 5.3e-13 78.2 150 36.0
VMungo0647G1622 Vigna mungo HOM05D004036 ORTHO05D004576 5.3e-13 78.2 142 39.4
SalBow8G4507 Salvia bowleyana HOM05D004036 ORTHO05D004576 9.0e-13 77.4 147 36.1
SalBow8G4816 Salvia bowleyana HOM05D004036 ORTHO05D004576 9.0e-13 77.4 147 36.1
Oeu031563.3 Olea europaea HOM05D004036 ORTHO05D004576 1.2e-12 77.0 152 38.2
Migut.E01501 Erythranthe guttata HOM05D004036 ORTHO05D004576 1.5e-12 76.6 140 37.1
Aa31LG3G15750 Aethionema arabicum HOM05D004036 ORTHO05D004576 2.0e-12 76.3 138 37.0
arahy.Tifrunner.gnm1.ann1.AAJ54F Arachis hypogaea HOM05D004036 ORTHO05D004576 2.0e-12 76.3 134 36.6
Thhalv10004997m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 2.0e-12 76.3 133 36.8
Nn8g39276 Nelumbo nucifera HOM05D004036 ORTHO05D004576 3.4e-12 75.5 150 38.7
Lalb_Chr23g0269031 Lupinus albus HOM05D004036 ORTHO05D004576 4.4e-12 75.1 130 36.9
arahy.Tifrunner.gnm1.ann1.7NC9IZ Arachis hypogaea HOM05D004036 ORTHO05D004576 7.6e-12 74.3 134 35.1
Sp2g22000 Schrenkiella parvula HOM05D004036 ORTHO05D004576 7.6e-12 74.3 131 35.1
Lj5g0012132 Lotus japonicus HOM05D004036 ORTHO05D004576 9.9e-12 73.9 129 35.7
THA.LOC104799217 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 9.9e-12 73.9 127 38.6
THA.LOC104815044 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 2.2e-11 72.8 133 39.8
MBI01_g10034_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 3.8e-11 72.0 163 30.1
Aa31LG11G4630 Aethionema arabicum HOM05D004036 ORTHO05D004576 6.4e-11 71.2 134 31.3
BolC7t44757H Brassica oleracea HOM05D004036 ORTHO05D004576 8.4e-11 70.9 129 38.0
Cpa.g.sc91.6 Carica papaya HOM05D004036 ORTHO05D004576 8.4e-11 70.9 89 47.2
A10p26310 Brassica napus HOM05D004036 ORTHO05D004576 1.1e-10 70.5 135 35.6
Prupe.7G234300 Prunus persica HOM05D004036 ORTHO05D004576 1.9e-10 69.7 143 33.6
C07p42280 Brassica napus HOM05D004036 ORTHO05D004576 2.4e-10 69.3 133 37.6
Thhalv10014836m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 2.4e-10 69.3 140 36.4
MBI04_g26645_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 3.2e-10 68.9 156 35.9
AL6G22100 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 7.1e-10 67.8 136 33.1
A06p36250 Brassica napus HOM05D004036 ORTHO05D004576 7.1e-10 67.8 133 36.8
BraA06t26547Z Brassica rapa HOM05D004036 ORTHO05D004576 7.1e-10 67.8 133 36.8
CARHR201790 Cardamine hirsuta HOM05D004036 ORTHO05D004576 7.1e-10 67.8 138 33.3
BcaC04g19226 Brassica carinata HOM05D004036 ORTHO05D004576 9.3e-10 67.4 130 36.2
C09p65420 Brassica napus HOM05D004036 ORTHO05D004576 9.3e-10 67.4 130 36.2
BolC9t59367H Brassica oleracea HOM05D004036 ORTHO05D004576 9.3e-10 67.4 130 36.2
Lalb_Chr08g0243781 Lupinus albus HOM05D004036 ORTHO05D004576 9.3e-10 67.4 123 34.1
PGR031G0366 Punica granatum HOM05D004036 ORTHO05D004576 9.3e-10 67.4 142 36.6
BcaC03g13367 Brassica carinata HOM05D004036 ORTHO05D004576 1.2e-09 67.0 128 32.8
BcaNung01927 Brassica carinata HOM05D004036 ORTHO05D004576 1.2e-09 67.0 128 32.8
AT5G11440 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 2.7e-09 65.9 133 32.3
Sp6g32160 Schrenkiella parvula HOM05D004036 ORTHO05D004576 2.7e-09 65.9 133 36.1
Carub.0006s0989 Capsella rubella HOM05D004036 ORTHO05D004576 3.5e-09 65.5 134 35.8
Gohir.D04G088301 Gossypium hirsutum HOM05D004036 ORTHO05D004576 6.0e-09 64.7 58 51.7
Gohir.D12G143101 Gossypium hirsutum HOM05D004036 ORTHO05D004576 6.0e-09 64.7 58 51.7
PSO063G5334 Papaver somniferum HOM05D004036 ORTHO05D004576 6.0e-09 64.7 131 33.6
TAR383G0233 Trochodendron aralioides HOM05D004036 ORTHO05D004576 6.0e-09 64.7 81 45.7
BcaB01g06306 Brassica carinata HOM05D004036 ORTHO05D004576 7.8e-09 64.3 134 33.6
Oeu019418.1 Olea europaea HOM05D004036 ORTHO05D004576 1.0e-08 63.9 151 35.1
AT5G25540 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 1.3e-08 63.5 137 34.3
BolC2t12008H Brassica oleracea HOM05D004036 ORTHO05D004576 1.3e-08 63.5 129 34.1
BcaNung07259 Brassica carinata HOM05D000175 ORTHO05D000481 3.0e-08 62.4 129 34.9
MD08G1136600 Malus domestica HOM05D004036 ORTHO05D004576 3.0e-08 62.4 40 70.0
PSO782G2888 Papaver somniferum HOM05D004036 ORTHO05D004576 3.0e-08 62.4 131 32.8
GSVIVG01015440001 Vitis vinifera HOM05D004036 ORTHO05D004576 3.9e-08 62.0 42 69.0
BcaB08g37059 Brassica carinata HOM05D004036 ORTHO05D004576 5.1e-08 61.6 138 34.1
A02p01010 Brassica napus HOM05D004036 ORTHO05D004576 5.1e-08 61.6 136 31.6
C01p19860 Brassica napus HOM05D004036 ORTHO05D004576 5.1e-08 61.6 126 34.9
BolC1t01914H Brassica oleracea HOM05D004036 ORTHO05D004576 5.1e-08 61.6 126 34.9
BraA02t05082Z Brassica rapa HOM05D004036 ORTHO05D004576 5.1e-08 61.6 136 31.6
BcaC09g50856 Brassica carinata HOM05D004036 ORTHO05D004576 6.6e-08 61.2 126 34.1
BraA10t44688Z Brassica rapa HOM05D004036 ORTHO05D004576 6.6e-08 61.2 136 32.4
A03p05000 Brassica napus HOM05D004036 ORTHO05D004576 8.7e-08 60.8 136 32.4
C03p05740 Brassica napus HOM05D004036 ORTHO05D004576 8.7e-08 60.8 136 32.4
CARHR187840 Cardamine hirsuta HOM05D004036 ORTHO05D004576 8.7e-08 60.8 132 33.3
C02p05040 Brassica napus HOM05D004036 ORTHO05D004576 1.9e-07 59.7 136 31.6
BcaB07g29991 Brassica carinata HOM05D004036 ORTHO05D004576 2.5e-07 59.3 127 32.3
AL6G37340 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 3.3e-07 58.9 132 33.3
BolC3t13087H Brassica oleracea HOM05D004036 ORTHO05D004576 5.6e-07 58.2 136 31.6
C07p03200 Brassica napus HOM05D004036 ORTHO05D004576 7.3e-07 57.8 126 31.0
BolC7t40715H Brassica oleracea HOM05D004036 ORTHO05D004576 7.3e-07 57.8 126 31.0
SGA_v2.0_scaffold169G38632 Striga asiatica HOM05D004036 ORTHO05D004576 7.3e-07 57.8 142 35.2
BcaB01g05484 Brassica carinata HOM05D004036 ORTHO05D004576 1.6e-06 56.6 136 30.9
C02p59450 Brassica napus HOM05D004036 ORTHO05D004576 2.1e-06 56.2 127 32.3
HanXRQChr03g0077811 Helianthus annuus HOM05D004036 ORTHO05D004576 2.1e-06 56.2 41 65.9
Carub.0006s2340 Capsella rubella HOM05D004036 ORTHO05D004576 2.8e-06 55.8 133 30.8


User provided reference genes

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