Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc23g0006880 Simmondsia chinensis HOM05D003845 ORTHO05D004161 0.0e+00 4193.3 2191 100.0
TAR629G0674 Trochodendron aralioides HOM05D003845 ORTHO05D004161 0.0e+00 2655.2 2192 64.7
GSVIVG01031064001 Vitis vinifera HOM05D003845 ORTHO05D004161 0.0e+00 2630.5 2252 62.2
AUR62014525 Chenopodium quinoa HOM05D003845 ORTHO05D004161 0.0e+00 2627.0 2235 63.5
CSS0012709 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 0.0e+00 2624.7 2079 67.0
Actinidia36313 Actinidia chinensis HOM05D003845 ORTHO05D004161 0.0e+00 2611.6 2109 65.5
Thecc.04G136100 Theobroma cacao HOM05D003845 ORTHO05D004161 0.0e+00 2600.5 2106 65.6
EL10Ac2g04592 Beta vulgaris HOM05D003845 ORTHO05D004161 0.0e+00 2595.8 2187 64.2
Dinv33933 Davidia involucrata HOM05D003845 ORTHO05D004161 0.0e+00 2583.1 1886 70.9
RcHm_v2.0_Chr2g0162941 Rosa chinensis HOM05D003845 ORTHO05D004161 0.0e+00 2566.6 2163 63.6
Duzib133G1200 Durio zibethinus HOM05D003845 ORTHO05D004161 0.0e+00 2565.4 2084 64.7
Atru.chr8.887 Acer truncatum HOM05D003845 ORTHO05D004161 0.0e+00 2563.9 2213 62.4
MD14G1001900 Malus domestica HOM05D003845 ORTHO05D004161 0.0e+00 2551.9 2190 62.5
Manes.02G067500 Manihot esculenta HOM05D003845 ORTHO05D004161 0.0e+00 2550.4 2216 63.3
Potri.004G101250 Populus trichocarpa HOM05D003845 ORTHO05D004161 0.0e+00 2545.4 2107 63.5
FvH4_6g45230 Fragaria vesca HOM05D003845 ORTHO05D004161 0.0e+00 2544.2 2144 63.8
Gohir.A07G071701 Gossypium hirsutum HOM05D003845 ORTHO05D004161 0.0e+00 2541.1 2218 61.9
Gohir.D07G076100 Gossypium hirsutum HOM05D003845 ORTHO05D004161 0.0e+00 2540.0 2186 62.1
MD12G1002400 Malus domestica HOM05D003845 ORTHO05D004161 0.0e+00 2540.0 2198 62.4
Gorai.001G080300 Gossypium raimondii HOM05D003845 ORTHO05D004161 0.0e+00 2536.1 2223 61.9
Prupe.7G002300 Prunus persica HOM05D003845 ORTHO05D004161 0.0e+00 2521.9 2062 65.1
TWI53G0876 Tripterygium wilfordii HOM05D003845 ORTHO05D004161 0.0e+00 2514.6 2214 61.4
CANSAT64G2814 Cannabis sativa HOM05D003845 ORTHO05D004161 0.0e+00 2509.2 2234 61.5
AUR62008978 Chenopodium quinoa HOM05D003845 ORTHO05D004161 0.0e+00 2506.1 2141 63.2
Nn4g23790 Nelumbo nucifera HOM05D003845 ORTHO05D004161 0.0e+00 2483.8 2077 63.6
Eucgr.F02484 Eucalyptus grandis HOM05D003845 ORTHO05D004161 0.0e+00 2449.1 2188 60.5
Glyma.18G297900 Glycine max HOM05D003845 ORTHO05D004161 0.0e+00 2448.3 2062 62.6
Cc07_g08900 Coffea canephora HOM05D003845 ORTHO05D004161 0.0e+00 2442.2 2050 63.6
CsaV3_5G039200 Cucumis sativus L. HOM05D003845 ORTHO05D004161 0.0e+00 2441.8 2004 63.7
Lj1g0009000 Lotus japonicus HOM05D003845 ORTHO05D004161 0.0e+00 2434.8 1993 63.4
FAN02G2813 Fragaria x ananassa HOM05D003845 ORTHO05D004161 0.0e+00 2426.0 2200 60.8
Aqoxy3G03940 Aquilegia oxysepala HOM05D003845 ORTHO05D004161 0.0e+00 2419.8 2048 62.0
MELO3C022095.2 Cucumis melo HOM05D003845 ORTHO05D004161 0.0e+00 2416.7 2187 59.7
Lalb_Chr21g0317871 Lupinus albus HOM05D003845 ORTHO05D004161 0.0e+00 2415.2 2091 62.2
Ah.10g037590 Amaranthus hybridus HOM05D003845 ORTHO05D004161 0.0e+00 2405.6 1995 64.4
Sopen02g030490 Solanum pennellii HOM05D003845 ORTHO05D004161 0.0e+00 2400.5 1997 62.9
Phvul.008G004700 Phaseolus vulgaris HOM05D003845 ORTHO05D004161 0.0e+00 2399.4 2129 61.1
VMungo1383G2489 Vigna mungo HOM05D003845 ORTHO05D004161 0.0e+00 2399.4 1995 63.0
Medtr7g406950 Medicago truncatula HOM05D003845 ORTHO05D004161 0.0e+00 2397.1 2214 58.8
Sed0012635 Sechium edule HOM05D003845 ORTHO05D004161 0.0e+00 2392.8 2210 59.4
vmacro05567 Vaccinium macrocarpon HOM05D003845 ORTHO05D004161 0.0e+00 2376.3 2333 56.7
PGR004G1392 Punica granatum HOM05D003845 ORTHO05D004161 0.0e+00 2362.8 2068 61.2
Migut.H00208 Erythranthe guttata HOM05D003845 ORTHO05D004161 0.0e+00 2355.1 2188 59.2
Hma1.2p1_0136F.1_g062180 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 0.0e+00 2354.7 1635 73.8
Lsat_1_v5_gn_4_153700 Lactuca sativa HOM05D003845 ORTHO05D004161 0.0e+00 2347.0 2055 61.6
PSO063G7466 Papaver somniferum HOM05D003845 ORTHO05D004161 0.0e+00 2341.6 2076 60.8
ECA232G1957 Erigeron canadensis HOM05D003845 ORTHO05D004161 0.0e+00 2338.1 2045 60.9
Solyc02g085810.3 Solanum lycopersicum HOM05D003845 ORTHO05D004161 0.0e+00 2330.4 1997 61.4
Nitab4.5_0001569g0050 Nicotiana tabacum HOM05D003845 ORTHO05D004161 0.0e+00 2319.7 2109 60.2
HanXRQChr14g0438731 Helianthus annuus HOM05D003845 ORTHO05D004161 0.0e+00 2315.8 2040 60.8
FAN14G4373 Fragaria x ananassa HOM05D003845 ORTHO05D004161 0.0e+00 2314.3 2203 58.4
Dinv34837 Davidia involucrata HOM05D003845 ORTHO05D004161 0.0e+00 2304.2 2153 60.2
AT1G67140 Arabidopsis thaliana HOM05D003845 ORTHO05D004161 0.0e+00 2289.6 2002 60.8
arahy.Tifrunner.gnm1.ann1.4V7WUF Arachis hypogaea HOM05D003845 ORTHO05D004161 0.0e+00 2285.4 2006 60.3
arahy.Tifrunner.gnm1.ann1.UJVA95 Arachis hypogaea HOM05D003845 ORTHO05D004161 0.0e+00 2285.4 2006 60.3
THA.LOC104805559 Tarenaya hassleriana HOM05D003845 ORTHO05D004161 0.0e+00 2279.2 2253 55.8
A07p33800 Brassica napus HOM05D003845 ORTHO05D004161 0.0e+00 2275.7 2209 56.5
C06p43130 Brassica napus HOM05D003845 ORTHO05D004161 0.0e+00 2273.8 2222 57.1
BolC6t39126H Brassica oleracea HOM05D003845 ORTHO05D004161 0.0e+00 2273.8 2215 57.1
BraA07t31006Z Brassica rapa HOM05D003845 ORTHO05D004161 0.0e+00 2273.4 2210 56.7
Aa31LG2G3530 Aethionema arabicum HOM05D003845 ORTHO05D004161 0.0e+00 2272.7 2190 57.2
Thhalv10017993m.g Eutrema salsugineum HOM05D003845 ORTHO05D004161 0.0e+00 2272.3 2213 57.0
AL2G25520 Arabidopsis lyrata HOM05D003845 ORTHO05D004161 0.0e+00 2260.3 2258 56.5
Sp5g22090 Schrenkiella parvula HOM05D003845 ORTHO05D004161 0.0e+00 2259.6 2218 57.2
SalBow3G0178 Salvia bowleyana HOM05D003845 ORTHO05D004161 0.0e+00 2254.9 2338 54.8
Carub.0002s1343 Capsella rubella HOM05D003845 ORTHO05D004161 0.0e+00 2250.7 2182 57.4
Oeu052985.1 Olea europaea HOM05D003845 ORTHO05D004161 0.0e+00 2233.4 1962 61.3
SGA_v2.0_scaffold33G13453 Striga asiatica HOM05D003845 ORTHO05D004161 0.0e+00 2231.4 2229 56.3
CiPaw.04G040900 Carya illinoinensis HOM05D003845 ORTHO05D004161 0.0e+00 2168.7 1451 75.9
CAN.G625.4 Capsicum annuum HOM05D003845 ORTHO05D004161 0.0e+00 2126.7 1909 59.2
Peaxi162Scf00814g00242 Petunia axillaris HOM05D003845 ORTHO05D004161 0.0e+00 2107.4 2209 54.7
Nitab4.5_0002288g0020 Nicotiana tabacum HOM05D003845 ORTHO05D004161 0.0e+00 2095.5 2160 55.4
QL02p051715 Quercus lobata HOM05D003845 ORTHO05D004161 0.0e+00 1975.7 3032 42.1
Zm00001eb382690 Zea mays HOM05D003845 ORTHO05D004161 0.0e+00 1932.5 1986 53.6
HPP92_003934 Vanilla planifolia HOM05D003845 ORTHO05D004161 0.0e+00 1902.5 1998 52.9
Lj2C445G6 Lonicera japonica HOM05D003845 ORTHO05D004161 0.0e+00 1760.7 1741 56.5
Hma1.2p1_0136F.1_g062170 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 0.0e+00 1691.4 1127 76.8
ClCG11G005440 Citrullus lanatus HOM05D003845 ORTHO05D004161 0.0e+00 1685.2 1755 54.6
ATR0564G046 Amborella trichopoda HOM05D003845 ORTHO05D004161 0.0e+00 1674.1 1737 53.3
SHI17842 Sapria himalayana HOM05D003845 ORTHO05D004161 0.0e+00 1666.0 2010 47.8
Psat3g206280 Pisum sativum HOM05D003845 ORTHO05D004161 0.0e+00 1610.9 1689 53.8
Mapoly0101s0033 Marchantia polymorpha HOM05D003845 ORTHO05D004161 0.0e+00 1520.0 2237 41.8
Pp3c15_3000 Physcomitrium patens HOM05D003845 ORTHO05D004161 0.0e+00 1483.4 2227 41.9
CDE02G0049 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 0.0e+00 1400.2 1351 55.9
Hund16134 Selenicereus undatus HOM05D003845 ORTHO05D004161 0.0e+00 1369.0 919 76.3
AagrBONN_evm.TU.Sc2ySwM_368.2329__2330 Anthoceros agrestis HOM05D003845 ORTHO05D004161 0.0e+00 1310.0 1988 40.2
SMO239G0031 Selaginella moellendorffii HOM05D003845 ORTHO05D004161 0.0e+00 1296.6 2010 40.6
CBR_g31193 Chara braunii HOM05D003845 ORTHO05D004161 0.0e+00 1218.8 2079 37.4
SEGI_31548 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 0.0e+00 1204.9 1531 45.8
Os06g0505302 Oryza sativa ssp. japonica HOM05D003845 ORTHO05D004161 0.0e+00 1160.2 1028 59.5
PSO782G1231 Papaver somniferum HOM05D003845 ORTHO05D004161 0.0e+00 1153.7 832 70.3
Ca_04077_v3 Cicer arietinum L. HOM05D003845 ORTHO05D004161 0.0e+00 1102.0 1395 48.0
CARHR059600 Cardamine hirsuta HOM05D003845 ORTHO05D004161 1.1e-309 1067.8 849 66.0
HPP92_003935 Vanilla planifolia HOM05D003845 ORTHO05D004161 1.5e-290 1004.2 830 61.8
Hund16135 Selenicereus undatus HOM05D003845 ORTHO05D004161 1.7e-265 921.0 1021 51.7
Ciclev10010942m.g Citrus clementina HOM05D003845 ORTHO05D004161 3.7e-260 903.3 1018 49.8
unitig_899.g14511 Utricularia gibba HOM05D003845 ORTHO05D004161 1.6e-250 871.3 1231 44.0
Lj1g0022983 Lotus japonicus HOM05D003845 ORTHO05D004161 4.4e-229 800.0 867 49.1
EL10Ac2g04610 Beta vulgaris HOM05D003845 ORTHO05D004161 1.3e-228 798.5 578 72.8
unitig_899.g14510 Utricularia gibba HOM05D003845 ORTHO05D004161 5.8e-213 746.5 728 56.9
BcaB03g15908 Brassica carinata HOM05D003845 ORTHO05D004161 1.1e-195 689.1 802 48.0
DCAR_017205 Daucus carota HOM05D003845 ORTHO05D004161 5.1e-193 680.2 721 50.5
CSS0018407 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 4.5e-189 667.2 440 78.9
Ca_03194_v3 Cicer arietinum L. HOM05D003845 ORTHO05D003700 2.2e-180 638.3 459 71.0
Cpa.g.sc179.5 Carica papaya HOM05D003845 ORTHO05D004161 5.9e-173 613.6 987 39.5
Lj2C445T15 Lonicera japonica HOM05D003845 ORTHO05D004161 9.3e-171 606.3 436 72.9
Ciclev10011943m.g Citrus clementina HOM05D003845 ORTHO05D004161 1.0e-164 586.3 384 76.6
ClCG11G005430 Citrullus lanatus HOM05D003845 ORTHO05D004161 4.1e-158 564.3 375 76.0
SEGI_40473 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 1.2e-141 509.6 403 65.0
ATR0564G289 Amborella trichopoda HOM05D003845 ORTHO05D004161 7.3e-115 420.6 288 70.8
Rhsim09G0080700 Rhododendron simsii HOM05D003845 ORTHO05D004161 1.2e-112 413.3 361 64.5
Cpa.g.sc179.9 Carica papaya HOM05D003845 ORTHO05D004161 8.3e-111 407.1 812 35.2
FAN09G0938 Fragaria x ananassa HOM05D003845 ORTHO05D004161 3.3e-107 395.2 264 77.3
SEGI_32880 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 1.7e-95 356.3 779 32.9
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 7.1e-94 350.9 299 60.2
RcHm_v2.0_Chr2g0163391 Rosa chinensis HOM05D003845 ORTHO05D004161 6.2e-90 337.8 286 63.6
PRCOL_00002157 Prasinoderma coloniale HOM05D003845 ORTHO05D004161 2.4e-89 335.9 1497 25.2
Cre16.g684100 Chlamydomonas reinhardtii HOM05D003845 ORTHO05D004161 3.8e-87 328.6 1777 24.4
Glyma.08G364200 Glycine max HOM05D003845 ORTHO05D004161 1.3e-84 320.1 428 40.9
Lsat_1_v5_gn_4_153641 Lactuca sativa HOM05D003845 ORTHO05D004161 1.6e-74 286.6 315 53.0
Haze_14141 Corylus avellana HOM05D003845 ORTHO05D004161 1.2e-69 270.4 423 42.6
COL.COLO4_05467 Corchorus olitorius HOM05D003845 ORTHO05D004161 1.8e-68 266.5 606 34.5
CAN.G625.3 Capsicum annuum HOM05D003845 ORTHO05D004161 1.5e-64 253.4 158 83.5
CSS0008855 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 6.5e-55 221.5 169 68.0
CSS0040864 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 1.9e-54 219.9 135 79.3
Ca_04078_v3 Cicer arietinum L. HOM05D003845 ORTHO05D004161 1.8e-52 213.4 157 69.4
QL02p051676 Quercus lobata HOM05D003845 ORTHO05D004161 1.5e-51 210.3 126 84.9
Lsat_1_v5_gn_5_95120 Lactuca sativa HOM05D000020 ORTHO05D000543 8.2e-50 204.5 194 62.4
Lsat_1_v5_gn_3_65920 Lactuca sativa HOM05D003845 ORTHO05D004161 5.3e-49 201.8 180 66.1
Lsat_1_v5_gn_4_179241 Lactuca sativa HOM05D003845 ORTHO05D004161 5.3e-49 201.8 180 66.1
Lsat_1_v5_gn_8_43240 Lactuca sativa HOM05D003845 ORTHO05D004161 5.3e-49 201.8 180 66.1
Actinidia15875 Actinidia chinensis HOM05D003845 ORTHO05D004161 3.6e-45 189.1 119 80.7
CiPaw.04G041000 Carya illinoinensis HOM05D003845 ORTHO05D004161 4.1e-41 175.6 433 34.6
Lsat_1_v5_gn_5_70501 Lactuca sativa HOM05D003845 ORTHO05D004161 3.9e-36 159.1 129 69.8
Cpa.g.sc179.6 Carica papaya HOM05D003845 ORTHO05D004161 4.4e-35 155.6 148 58.8
CDE02G2490 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 1.0e-31 144.4 317 35.6
Lj6g0007936 Lotus japonicus HOM05D003845 ORTHO05D004161 2.1e-29 136.7 326 29.8
Cfa024622 Carpinus fangiana HOM05D003845 ORTHO05D004161 5.2e-28 132.1 1117 21.3
Lsat_1_v5_gn_8_163720 Lactuca sativa HOM05D003845 ORTHO05D004161 9.7e-27 127.9 116 65.5
Actinidia15877 Actinidia chinensis HOM05D003845 ORTHO05D004161 5.9e-24 118.6 196 38.3
CSS0031203 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 3.8e-23 115.9 69 84.1
Cpa.g.c36099 Carica papaya HOM05D003845 ORTHO05D004161 1.5e-22 114.0 75 76.0
Manes.07G074028 Manihot esculenta HOM05D003845 ORTHO05D004161 1.9e-22 113.6 100 61.0
MCO14G535 Micromonas commoda HOM05D003845 ORTHO05D004161 9.4e-22 111.3 487 25.1
COL.COLO4_16180 Corchorus olitorius HOM05D003845 ORTHO05D004161 1.3e-18 100.9 56 85.7
Gorai.001G080600 Gossypium raimondii HOM05D003845 ORTHO05D004161 2.8e-18 99.8 119 44.5
Lsat_1_v5_gn_8_150280 Lactuca sativa HOM05D001675 ORTHO05D004161 1.8e-17 97.1 61 65.6
Dinv33934 Davidia involucrata HOM05D003845 ORTHO05D004161 2.4e-17 96.7 215 40.9
CSS0027472 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 5.4e-17 95.5 54 81.5
CAN.G178.11 Capsicum annuum HOM05D007284 ORTHO05D009303 1.2e-16 94.4 94 56.4
Cpa.g.sc3785.2 Carica papaya HOM05D003845 ORTHO05D004161 2.0e-16 93.6 75 66.7
Cpa.g.sc179.7 Carica papaya HOM05D003845 ORTHO05D004161 5.0e-15 89.0 57 84.2
Actinidia17345 Actinidia chinensis HOM05D003845 ORTHO05D004161 6.5e-15 88.6 53 81.1
Actinidia17348 Actinidia chinensis HOM05D003226 ORTHO05D015784 6.5e-15 88.6 53 81.1
Actinidia20850 Actinidia chinensis HOM05D003845 ORTHO05D004161 6.5e-15 88.6 100 56.0
Lsat_1_v5_gn_5_158740 Lactuca sativa HOM05D000727 ORTHO05D000541 6.5e-15 88.6 54 66.7
Actinidia20836 Actinidia chinensis HOM05D004442 ORTHO05D002066 1.5e-14 87.4 70 65.7
EL10Ac8g19727 Beta vulgaris HOM05D003845 ORTHO05D004161 1.5e-14 87.4 54 88.9
Hund04285 Selenicereus undatus HOM05D003845 ORTHO05D004161 7.2e-14 85.1 58 70.7
Actinidia13420 Actinidia chinensis HOM05D003845 ORTHO05D004161 9.5e-14 84.7 62 69.4
arahy.Tifrunner.gnm1.ann1.57NG5G Arachis hypogaea HOM05D003845 ORTHO05D004161 1.2e-13 84.3 52 78.8
RcHm_v2.0_Chr2g0123031 Rosa chinensis HOM05D003845 ORTHO05D004161 1.2e-13 84.3 68 63.2
Hund29189 Selenicereus undatus HOM05D008000 ORTHO05D000006 1.6e-13 84.0 75 61.3
Hund29191 Selenicereus undatus HOM05D008000 ORTHO05D000006 1.6e-13 84.0 75 61.3
TPR.G40067 Trifolium pratense HOM05D003845 ORTHO05D004161 8.0e-13 81.6 51 80.4
arahy.Tifrunner.gnm1.ann1.395ZIT Arachis hypogaea HOM05D003845 ORTHO05D004161 1.0e-12 81.3 56 69.6
CSS0006962 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 1.2e-11 77.8 42 88.1
RcHm_v2.0_Chr2g0166391 Rosa chinensis HOM05D003845 ORTHO05D004161 3.7e-10 72.8 66 54.5
ClCG11G005420 Citrullus lanatus HOM05D003845 ORTHO05D004161 6.3e-10 72.0 50 76.0
Pp3c9_4980 Physcomitrium patens HOM05D003845 ORTHO05D004161 8.3e-10 71.6 115 39.1
EL10Ac9g21747 Beta vulgaris HOM05D000802 ORTHO05D001074 1.1e-09 71.2 64 70.3
Mapoly0010s0133 Marchantia polymorpha HOM05D003845 ORTHO05D004161 1.1e-09 71.2 109 38.5
RcHm_v2.0_Chr2g0166401 Rosa chinensis HOM05D003845 ORTHO05D004161 3.1e-09 69.7 142 34.5
arahy.Tifrunner.gnm1.ann1.MNN8Y6 Arachis hypogaea HOM05D003845 ORTHO05D004161 1.6e-08 67.4 63 60.3
Lsat_1_v5_gn_7_94541 Lactuca sativa HOM05D003845 ORTHO05D004161 1.0e-07 64.7 41 75.6
Lsat_1_v5_gn_1_87981 Lactuca sativa HOM05D003845 ORTHO05D004161 2.3e-07 63.5 47 61.7
MBI02_g02968_MAGBIO Magnolia biondii HOM05D003845 ORTHO05D004161 1.5e-06 60.8 45 68.9


User provided reference genes

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