Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc23g0006530 Simmondsia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 2353.2 1184 100.0
EL10Ac2g04152 Beta vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 1920.2 1193 81.5
AUR62031571 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1898.6 1193 81.3
Ah.16g104820 Amaranthus hybridus HOM05D004589 ORTHO05D005848 0.0e+00 1897.9 1195 81.5
AUR62012448 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1897.9 1193 80.8
Dinv03411 Davidia involucrata HOM05D004589 ORTHO05D005848 0.0e+00 1875.5 1201 78.9
CSS0038938 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 0.0e+00 1866.3 1199 78.9
Actinidia23085 Actinidia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1856.3 1203 78.6
Cfa013100 Carpinus fangiana HOM05D004589 ORTHO05D005848 0.0e+00 1846.2 1201 78.0
Haze_21457 Corylus avellana HOM05D004589 ORTHO05D005848 0.0e+00 1846.2 1201 78.2
Thecc.09G019500 Theobroma cacao HOM05D004589 ORTHO05D005848 0.0e+00 1840.9 1200 77.7
TWI63G0229 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 0.0e+00 1838.9 1200 76.8
COL.COLO4_18916 Corchorus olitorius HOM05D004589 ORTHO05D005848 0.0e+00 1836.2 1199 77.2
Duzib150G1268 Durio zibethinus HOM05D004589 ORTHO05D005848 0.0e+00 1836.2 1200 77.5
Ciclev10007276m.g Citrus clementina HOM05D004589 ORTHO05D005848 0.0e+00 1823.9 1198 77.6
ClCG05G016580 Citrullus lanatus HOM05D004589 ORTHO05D005848 0.0e+00 1812.0 1206 75.9
PGR044G0530 Punica granatum HOM05D004589 ORTHO05D005848 0.0e+00 1808.9 1195 76.0
QL02p020149 Quercus lobata HOM05D004589 ORTHO05D005848 0.0e+00 1805.8 1292 71.5
Potri.018G022500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 1804.3 1188 75.9
MELO3C016987.2 Cucumis melo HOM05D004589 ORTHO05D005848 0.0e+00 1803.9 1199 75.3
Gohir.A07G030400 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1800.4 1200 75.8
Gorai.001G035900 Gossypium raimondii HOM05D004589 ORTHO05D005848 0.0e+00 1799.3 1200 75.8
RhsimUnG0052600 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 1798.5 1285 73.2
RhsimUnG0165300 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 1798.5 1285 73.2
Nn2g12251 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 1797.7 1204 75.1
Lj5g0022357 Lotus japonicus HOM05D004589 ORTHO05D005848 0.0e+00 1795.8 1201 76.2
VMungo0647G1846 Vigna mungo HOM05D004589 ORTHO05D005848 0.0e+00 1795.8 1198 75.5
MD15G1131100 Malus domestica HOM05D004589 ORTHO05D005848 0.0e+00 1794.6 1200 75.3
FvH4_2g28290 Fragaria vesca HOM05D004589 ORTHO05D005848 0.0e+00 1793.5 1197 75.4
Sed0004204 Sechium edule HOM05D004589 ORTHO05D005848 0.0e+00 1792.3 1197 75.3
Glyma.14G112200 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 1791.9 1200 75.3
Phvul.001G047300 Phaseolus vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 1791.9 1199 75.5
Oeu056766.2 Olea europaea HOM05D004589 ORTHO05D005848 0.0e+00 1790.0 1201 75.8
RcHm_v2.0_Chr6g0297201 Rosa chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1789.6 1197 75.7
Glyma.17G215700 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 1789.2 1200 75.2
FAN24G2656 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1785.4 1213 74.5
Ca_13043_v3 Cicer arietinum L. HOM05D004589 ORTHO05D005848 0.0e+00 1783.5 1192 75.4
Eucgr.C02726 Eucalyptus grandis HOM05D004589 ORTHO05D005848 0.0e+00 1783.1 1200 74.2
Aqoxy7G03529 Aquilegia oxysepala HOM05D004589 ORTHO05D005848 0.0e+00 1781.1 1202 75.0
Potri.006G259500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 1780.4 1189 75.9
Lj8A732G29 Lonicera japonica HOM05D004589 ORTHO05D005848 0.0e+00 1780.0 1285 72.0
Nitab4.5_0002503g0050 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 1779.2 1210 74.7
THA.LOC104799036 Tarenaya hassleriana HOM05D004589 ORTHO05D005848 0.0e+00 1777.7 1201 75.0
Lalb_Chr11g0075481 Lupinus albus HOM05D004589 ORTHO05D005848 0.0e+00 1775.8 1203 75.3
Psat6g028520 Pisum sativum HOM05D004589 ORTHO05D005848 0.0e+00 1774.2 1191 75.5
FAN15G2875 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1770.7 1213 74.1
Sp6g32450 Schrenkiella parvula HOM05D004589 ORTHO05D005848 0.0e+00 1767.7 1198 74.1
BraA10t44722Z Brassica rapa HOM05D004589 ORTHO05D005848 0.0e+00 1767.3 1197 74.4
Thhalv10012483m.g Eutrema salsugineum HOM05D004589 ORTHO05D005848 0.0e+00 1767.3 1198 74.4
C09p65810 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 1766.9 1197 74.4
Medtr1g012980 Medicago truncatula HOM05D004589 ORTHO05D005848 0.0e+00 1766.1 1191 74.8
A10p26640 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 1765.7 1197 74.4
BolC9t59402H Brassica oleracea HOM05D004589 ORTHO05D005848 0.0e+00 1763.8 1197 74.4
Cc08_g00190 Coffea canephora HOM05D004589 ORTHO05D005848 0.0e+00 1761.5 1205 74.7
Peaxi162Scf00430g00220 Petunia axillaris HOM05D004589 ORTHO05D005848 0.0e+00 1760.3 1194 75.0
CAN.G199.72 Capsicum annuum HOM05D004589 ORTHO05D005848 0.0e+00 1759.6 1193 74.4
FAN27G1181 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1758.8 1213 73.6
Solyc06g065840.3 Solanum lycopersicum HOM05D004589 ORTHO05D005848 0.0e+00 1757.7 1193 74.5
HanXRQChr16g0511131 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1756.9 1192 74.7
CANSAT11G1771 Cannabis sativa HOM05D004589 ORTHO05D005848 0.0e+00 1754.2 1198 74.8
AL6G21660 Arabidopsis lyrata HOM05D004589 ORTHO05D005848 0.0e+00 1753.4 1197 73.7
Sopen06g024330 Solanum pennellii HOM05D004589 ORTHO05D005848 0.0e+00 1753.4 1193 74.4
arahy.Tifrunner.gnm1.ann1.JQP3NY Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 1749.9 1198 73.9
AT5G11040 Arabidopsis thaliana HOM05D004589 ORTHO05D005848 0.0e+00 1748.8 1197 73.4
ECA246G2532 Erigeron canadensis HOM05D004589 ORTHO05D005848 0.0e+00 1747.6 1196 73.8
MSTRG.1735 Avicennia marina HOM05D004589 ORTHO05D005848 0.0e+00 1747.3 1201 73.3
Carub.0006s0955 Capsella rubella HOM05D004589 ORTHO05D005848 0.0e+00 1745.7 1196 74.0
Aa31LG3G16090 Aethionema arabicum HOM05D004589 ORTHO05D005848 0.0e+00 1744.6 1199 73.0
arahy.Tifrunner.gnm1.ann1.PKKG09 Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 1744.6 1198 74.0
PSO210G3160 Papaver somniferum HOM05D004589 ORTHO05D005848 0.0e+00 1742.2 1209 73.4
Nn8g39722 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 1741.5 1203 73.0
Nitab4.5_0003811g0060 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 1731.8 1226 73.0
Migut.E01823 Erythranthe guttata HOM05D004589 ORTHO05D005848 0.0e+00 1728.8 1200 73.2
vmacro22576 Vaccinium macrocarpon HOM05D004589 ORTHO05D005848 0.0e+00 1718.4 1342 68.6
CiPaw.08G008300 Carya illinoinensis HOM05D004589 ORTHO05D005848 0.0e+00 1715.7 1131 77.1
SGA_v2.0_scaffold85G26586 Striga asiatica HOM05D004589 ORTHO05D005848 0.0e+00 1711.4 1193 72.8
Gohir.D06G102200 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1683.3 1199 71.3
Lsat_1_v5_gn_6_115440 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1681.0 1181 72.1
Manes.16G126200 Manihot esculenta HOM05D004589 ORTHO05D005848 0.0e+00 1677.5 1197 71.3
ATR0629G049 Amborella trichopoda HOM05D004589 ORTHO05D005848 0.0e+00 1670.6 1206 70.6
Atru.chr7.2502 Acer truncatum HOM05D004589 ORTHO05D005848 0.0e+00 1669.8 1100 77.0
BcaC04g19264 Brassica carinata HOM05D004589 ORTHO05D005848 0.0e+00 1666.0 1199 71.6
GSVIVG01035919001 Vitis vinifera HOM05D004589 ORTHO05D005848 0.0e+00 1641.7 1189 71.8
DCAR_021911 Daucus carota HOM05D004589 ORTHO05D005848 0.0e+00 1602.4 1209 69.1
CDE05G2463 Ceratophyllum demersum HOM05D004589 ORTHO05D005848 0.0e+00 1597.4 1214 67.6
HanXRQChr01g0030641 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1566.6 1189 66.1
CsaV3_4G036860 Cucumis sativus L. HOM05D004589 ORTHO05D005848 0.0e+00 1549.3 1034 75.8
Lsat_1_v5_gn_1_43861 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1545.4 1195 66.9
Zm00001eb078140 Zea mays HOM05D004589 ORTHO05D005848 0.0e+00 1536.5 1193 65.2
Gorai.010G117200 Gossypium raimondii HOM05D004589 ORTHO05D005848 0.0e+00 1528.5 1040 73.9
Gohir.A06G100000 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1523.1 1040 73.7
Manes.03G011700 Manihot esculenta HOM05D004589 ORTHO05D005848 0.0e+00 1512.3 1010 76.0
Os04g0502200 Oryza sativa ssp. japonica HOM05D004589 ORTHO05D005848 0.0e+00 1502.3 1211 64.1
TAR383G0245 Trochodendron aralioides HOM05D004589 ORTHO05D005848 0.0e+00 1454.1 1023 73.1
FAN20G1713 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1450.3 976 75.3
CARHR202250 Cardamine hirsuta HOM05D004589 ORTHO05D005848 0.0e+00 1447.6 991 74.2
Prupe.1G486400 Prunus persica HOM05D004589 ORTHO05D005848 0.0e+00 1439.9 977 74.9
Hund04463 Selenicereus undatus HOM05D004589 ORTHO05D005848 0.0e+00 1425.2 928 79.2
ECA248G0813 Erigeron canadensis HOM05D004589 ORTHO05D005848 0.0e+00 1395.6 1053 67.7
Hma1.2p1_0167F.1_g073640 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 0.0e+00 1372.8 896 78.3
AagrBONN_evm.TU.Sc2ySwM_368.2742 Anthoceros agrestis HOM05D004589 ORTHO05D005848 0.0e+00 1308.1 1210 57.2
Gohir.D07G034300 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1288.9 827 77.9
Mapoly0001s0490 Marchantia polymorpha HOM05D004589 ORTHO05D005848 0.0e+00 1213.4 1227 52.6
unitig_32.g11112 Utricularia gibba HOM05D004589 ORTHO05D005848 0.0e+00 1192.2 863 69.8
HPP92_020312 Vanilla planifolia HOM05D004589 ORTHO05D005848 0.0e+00 1138.3 903 65.0
Pp3c19_10170 Physcomitrium patens HOM05D004589 ORTHO05D005848 0.0e+00 1093.6 1208 50.0
Pp3c22_21520 Physcomitrium patens HOM05D004589 ORTHO05D005848 0.0e+00 1083.9 1207 50.0
CBR_g36903 Chara braunii HOM05D004589 ORTHO05D005848 2.5e-271 939.5 1324 43.1
SMO364G0672 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 7.3e-271 937.9 1185 44.6
SMO199G0047 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 3.5e-249 865.9 1224 42.5
Actinidia14103 Actinidia chinensis HOM05D004589 ORTHO05D005848 9.0e-245 851.3 518 82.6
SMO361G0208 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 2.6e-228 796.6 1127 42.4
TPR.G40835 Trifolium pratense HOM05D004589 ORTHO05D005848 8.3e-190 668.7 424 79.2
TPR.G38909 Trifolium pratense HOM05D004589 ORTHO05D005848 1.8e-152 544.7 422 66.1
HPP92_024788 Vanilla planifolia HOM05D004589 ORTHO05D005848 2.4e-152 544.3 740 44.1
arahy.Tifrunner.gnm1.ann1.X695T9 Arachis hypogaea HOM05D004589 ORTHO05D005848 2.1e-148 531.2 471 62.6
TPR.G38939 Trifolium pratense HOM05D004589 ORTHO05D005848 4.8e-145 520.0 324 77.8
Cpa.g.sc187.29 Carica papaya HOM05D004589 ORTHO05D005848 1.3e-139 501.9 306 78.1
SEGI_04045 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 9.6e-130 469.2 323 70.0
Gohir.D07G034250 Gossypium hirsutum HOM05D004589 ORTHO05D005848 1.6e-129 468.4 347 69.7
Hma1.2p1_0167F.1_g073630 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 1.4e-112 412.1 292 72.3
arahy.Tifrunner.gnm1.ann1.3DY4JU Arachis hypogaea HOM05D004589 ORTHO05D005848 7.7e-111 406.4 329 67.8
unitig_32.g11113 Utricularia gibba HOM05D004589 ORTHO05D005848 1.6e-100 372.1 309 61.8
SEGI_21363 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 8.8e-99 366.3 360 54.7
Medtr7g069440 Medicago truncatula HOM05D004589 ORTHO05D005848 7.0e-88 330.1 389 49.6
AagrBONN_evm.TU.Sc2ySwM_368.2737 Anthoceros agrestis HOM05D004589 ORTHO05D005848 3.8e-86 324.3 278 56.1
HPP92_024789 Vanilla planifolia HOM05D004589 ORTHO05D005848 1.9e-85 322.0 256 66.0
Zm00001eb426010 Zea mays HOM05D004589 ORTHO05D005848 2.4e-64 251.9 267 52.4
TAR383G0934 Trochodendron aralioides HOM05D004589 ORTHO05D005848 3.2e-64 251.5 158 77.8
Zm00001eb426000 Zea mays HOM05D004589 ORTHO05D005848 2.8e-52 211.8 150 72.7
Cpa.g.sc187.28 Carica papaya HOM05D004589 ORTHO05D005848 4.1e-48 198.0 114 80.7
arahy.Tifrunner.gnm1.ann1.6TA6W9 Arachis hypogaea HOM05D004589 ORTHO05D005848 4.6e-47 194.5 159 64.2
CSS0039966 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 2.1e-44 185.7 145 65.5
HPP92_024790 Vanilla planifolia HOM05D004589 ORTHO05D005848 2.1e-44 185.7 138 63.0
MD08G1153900 Malus domestica HOM05D004589 ORTHO05D005848 8.9e-43 180.3 116 72.4
SMO361G0808 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 1.6e-39 169.5 268 41.4
HPP92_020311 Vanilla planifolia HOM05D004589 ORTHO05D005848 6.0e-39 167.5 194 49.5
TWI34G0107 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 1.5e-34 152.9 161 53.4
Cre07.g316100 Chlamydomonas reinhardtii HOM05D004589 ORTHO05D005848 1.4e-32 146.4 304 30.3
Nn2g16054 Nelumbo nucifera HOM05D004589 ORTHO05D005848 1.4e-32 146.4 82 87.8
arahy.Tifrunner.gnm1.ann1.6PY749 Arachis hypogaea HOM05D004589 ORTHO05D005848 6.6e-30 137.5 159 50.3
SEGI_40067 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 6.2e-20 104.4 74 67.6
Atru.chr7.2501 Acer truncatum HOM05D004589 ORTHO05D005848 1.8e-19 102.8 59 81.4
SMO164G0067 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 6.0e-15 87.8 220 33.2
Sp3g28070 Schrenkiella parvula HOM05D004589 ORTHO05D005848 2.3e-14 85.9 62 69.4
RcHm_v2.0_Chr2g0096161 Rosa chinensis HOM05D004589 ORTHO05D005848 3.3e-13 82.0 45 80.0
A02p00800 Brassica napus HOM05D004589 ORTHO05D023960 6.9e-11 74.3 76 55.3
Sabra19G0134500 Salix brachista HOM05D001978 ORTHO05D000005 1.2e-10 73.6 70 55.7
C02p04820 Brassica napus HOM05D004589 ORTHO05D023960 1.5e-10 73.2 80 56.2
BolC2t06439H Brassica oleracea HOM05D004589 ORTHO05D023960 1.5e-10 73.2 80 56.2
Cc00_g21220 Coffea canephora HOM05D004589 ORTHO05D005848 1.1e-08 67.0 55 63.6
arahy.Tifrunner.gnm1.ann1.E2IMN8 Arachis hypogaea HOM05D004589 ORTHO05D005848 1.9e-08 66.2 44 59.1
GSVIVG01037947001 Vitis vinifera HOM05D004589 ORTHO05D005848 1.9e-08 66.2 38 73.7
Nn4g24965 Nelumbo nucifera HOM05D004589 ORTHO05D005848 7.9e-07 60.8 51 58.8
SMO364G0797 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 3.0e-06 58.9 112 35.7


User provided reference genes

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