Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc23g0006510 Simmondsia chinensis HOM05D001921 ORTHO05D001784 6.6e-71 270.8 155 100.0
Manes.16G126400 Manihot esculenta HOM05D001921 ORTHO05D001784 1.5e-14 83.6 185 36.2
Ah.16g104850 Amaranthus hybridus HOM05D001921 ORTHO05D001784 3.3e-14 82.4 183 41.0
Thecc.09G018900 Theobroma cacao HOM05D001921 ORTHO05D001784 1.6e-13 80.1 185 37.3
AUR62031574 Chenopodium quinoa HOM05D000017 ORTHO05D000013 2.8e-13 79.3 99 50.5
Rhsim02G0206800 Rhododendron simsii HOM05D001921 ORTHO05D001784 1.4e-12 77.0 168 37.5
Duzib168G1630 Durio zibethinus HOM05D001921 ORTHO05D001784 4.1e-12 75.5 181 35.9
Gorai.010G117300 Gossypium raimondii HOM05D001921 ORTHO05D001784 6.9e-12 74.7 177 36.7
Gohir.A06G100200 Gossypium hirsutum HOM05D001921 ORTHO05D001784 1.5e-11 73.6 177 36.2
Duzib187G0974 Durio zibethinus HOM05D001921 ORTHO05D001784 7.7e-11 71.2 182 32.4
Gohir.A07G030700 Gossypium hirsutum HOM05D001921 ORTHO05D001784 7.7e-11 71.2 183 33.9
Gohir.D06G102300 Gossypium hirsutum HOM05D001921 ORTHO05D001784 7.7e-11 71.2 177 36.2
Nitab4.5_0002992g0090 Nicotiana tabacum HOM05D001921 ORTHO05D001784 7.7e-11 71.2 183 35.5
Nitab4.5_0009186g0010 Nicotiana tabacum HOM05D001921 ORTHO05D001784 1.0e-10 70.9 181 32.0
COL.COLO4_18922 Corchorus olitorius HOM05D001921 ORTHO05D001784 1.3e-10 70.5 182 33.5
Gohir.D07G034600 Gossypium hirsutum HOM05D001921 ORTHO05D001784 2.2e-10 69.7 183 33.3
SabraUnG0005100 Salix brachista HOM05D001921 ORTHO05D001784 2.2e-10 69.7 184 33.2
DCAR_023282 Daucus carota HOM05D001921 ORTHO05D001784 3.8e-10 68.9 174 33.3
Sabra18G0025100 Salix brachista HOM05D001921 ORTHO05D001784 3.8e-10 68.9 189 31.7
Sabra06G0203000 Salix brachista HOM05D001921 ORTHO05D001784 6.5e-10 68.2 184 32.6
TWI32G1277 Tripterygium wilfordii HOM05D001921 ORTHO05D001784 6.5e-10 68.2 200 34.0
Atru.chr7.2506 Acer truncatum HOM05D001921 ORTHO05D001784 8.5e-10 67.8 217 35.0
Potri.018G022400 Populus trichocarpa HOM05D001921 ORTHO05D001784 8.5e-10 67.8 184 34.8
Prupe.1G486800 Prunus persica HOM05D001921 ORTHO05D001784 1.1e-09 67.4 183 35.0
Gorai.001G036300 Gossypium raimondii HOM05D001921 ORTHO05D001784 1.4e-09 67.0 183 34.4
Ciclev10009542m.g Citrus clementina HOM05D001921 ORTHO05D001784 1.9e-09 66.6 201 36.8
Cfa013096 Carpinus fangiana HOM05D001921 ORTHO05D001784 2.5e-09 66.2 176 32.4
Dinv03521 Davidia involucrata HOM05D001921 ORTHO05D001784 3.2e-09 65.9 184 32.6
Cfa013095 Carpinus fangiana HOM05D001921 ORTHO05D001784 4.2e-09 65.5 176 31.8
Eucgr.C02723 Eucalyptus grandis HOM05D001921 ORTHO05D001784 5.5e-09 65.1 119 44.5
TWI63G0810 Tripterygium wilfordii HOM05D001921 ORTHO05D001784 5.5e-09 65.1 185 31.4
Potri.006G260000 Populus trichocarpa HOM05D001921 ORTHO05D001784 9.4e-09 64.3 114 38.6
Prupe.1G486700 Prunus persica HOM05D001921 ORTHO05D001784 9.4e-09 64.3 174 33.3
CARHR239920 Cardamine hirsuta HOM05D001921 ORTHO05D001784 1.2e-08 63.9 105 40.0
Cpa.g.sc127.3 Carica papaya HOM05D001921 ORTHO05D001784 1.6e-08 63.5 169 37.3
Thhalv10026353m.g Eutrema salsugineum HOM05D001921 ORTHO05D001784 1.6e-08 63.5 191 29.3
Dinv03420 Davidia involucrata HOM05D001921 ORTHO05D001784 2.1e-08 63.2 155 34.2
Sp7g29820 Schrenkiella parvula HOM05D001921 ORTHO05D001784 2.1e-08 63.2 105 37.1
arahy.Tifrunner.gnm1.ann1.016HCI Arachis hypogaea HOM05D054817 ORTHO05D001784 3.6e-08 62.4 164 32.9
Oeu012641.1 Olea europaea HOM05D001921 ORTHO05D001784 4.6e-08 62.0 105 41.9
AT2G25250 Arabidopsis thaliana HOM05D001921 ORTHO05D001784 1.4e-07 60.5 157 32.5
arahy.Tifrunner.gnm1.ann1.0A2U5U Arachis hypogaea HOM05D054817 ORTHO05D001784 1.4e-07 60.5 164 32.3
Peaxi162Scf00116g00043 Petunia axillaris HOM05D001921 ORTHO05D001784 1.8e-07 60.1 153 34.6
VMungo1309G2915 Vigna mungo HOM05D001921 ORTHO05D001784 2.3e-07 59.7 181 30.9
C07p59050 Brassica napus HOM05D001921 ORTHO05D001784 3.0e-07 59.3 181 29.3
FAN27G2046 Fragaria x ananassa HOM05D014836 ORTHO05D017926 3.0e-07 59.3 176 32.4
Cfa020875 Carpinus fangiana HOM05D001921 ORTHO05D001784 3.9e-07 58.9 182 30.2
RcHm_v2.0_Chr6g0297171 Rosa chinensis HOM05D014836 ORTHO05D001784 3.9e-07 58.9 120 38.3
Carub.0007s0853 Capsella rubella HOM05D001921 ORTHO05D001784 5.1e-07 58.5 215 28.4
FAN20G2754 Fragaria x ananassa HOM05D014836 ORTHO05D017926 5.1e-07 58.5 175 31.4
Hma1.2p1_0228F.1_g096620 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 5.1e-07 58.5 103 43.7
Rhsim03G0253600 Rhododendron simsii HOM05D001921 ORTHO05D001784 5.1e-07 58.5 160 33.8
BolC7t46353H Brassica oleracea HOM05D001921 ORTHO05D001784 6.7e-07 58.2 184 32.6
Aa31sc859G10 Aethionema arabicum HOM05D001921 ORTHO05D001784 8.8e-07 57.8 106 38.7
AL7G19870 Arabidopsis lyrata HOM05D001921 ORTHO05D001784 8.8e-07 57.8 197 29.4
BraA03t15157Z Brassica rapa HOM05D001921 ORTHO05D001784 8.8e-07 57.8 179 29.1
Cpa.g.sc46.103 Carica papaya HOM05D001921 ORTHO05D001784 8.8e-07 57.8 119 39.5
CiPaw.07G227300 Carya illinoinensis HOM05D001921 ORTHO05D001784 8.8e-07 57.8 106 39.6
A03p61190 Brassica napus HOM05D001921 ORTHO05D001784 1.1e-06 57.4 180 28.9
CARHR116380 Cardamine hirsuta HOM05D001921 ORTHO05D001784 1.1e-06 57.4 103 41.7
Haze_19306 Corylus avellana HOM05D001921 ORTHO05D001784 1.5e-06 57.0 180 28.9
Solyc08g041860.1 Solanum lycopersicum HOM05D001921 ORTHO05D001784 1.5e-06 57.0 170 30.6
Sopen08g012070 Solanum pennellii HOM05D001921 ORTHO05D001784 1.5e-06 57.0 170 30.6
ECA246G3871 Erigeron canadensis HOM05D001921 ORTHO05D001784 2.0e-06 56.6 97 39.2
Lsat_1_v5_gn_6_115320 Lactuca sativa HOM05D001921 ORTHO05D001784 2.0e-06 56.6 70 50.0
PGSC0003DMG400029898 Solanum tuberosum HOM05D001921 ORTHO05D001784 2.0e-06 56.6 172 32.0
SGA_v2.0_scaffold57G20294 Striga asiatica HOM05D001921 ORTHO05D001784 2.0e-06 56.6 122 36.1
THA.LOC104804502 Tarenaya hassleriana HOM05D001921 ORTHO05D001784 2.0e-06 56.6 158 34.2
Haze_21453 Corylus avellana HOM05D001921 ORTHO05D001784 2.5e-06 56.2 155 31.6
TAR636G3386 Trochodendron aralioides HOM05D001921 ORTHO05D001784 2.5e-06 56.2 106 39.6
Dinv42904 Davidia involucrata HOM05D001921 ORTHO05D001784 3.3e-06 55.8 104 42.3
Dinv43197 Davidia involucrata HOM05D001921 ORTHO05D001784 3.3e-06 55.8 104 42.3
QL02p091546 Quercus lobata HOM05D001921 ORTHO05D001784 3.3e-06 55.8 127 37.8
TAR365G0872 Trochodendron aralioides HOM05D001921 ORTHO05D001784 3.3e-06 55.8 115 37.4
CAN.G1045.40 Capsicum annuum HOM05D001921 ORTHO05D001784 4.3e-06 55.5 102 41.2
CAN.G142.1 Capsicum annuum HOM05D001921 ORTHO05D001784 4.3e-06 55.5 181 31.5
MSTRG.3970 Avicennia marina HOM05D001921 ORTHO05D001784 5.7e-06 55.1 117 37.6
CiPaw.08G008000 Carya illinoinensis HOM05D001921 ORTHO05D001784 7.4e-06 54.7 108 38.0
Manes.06G040800 Manihot esculenta HOM05D001921 ORTHO05D001784 7.4e-06 54.7 117 35.0
Medtr4g116830 Medicago truncatula HOM05D001921 ORTHO05D001784 9.7e-06 54.3 116 38.8
TWI63G1839 Tripterygium wilfordii HOM05D001921 ORTHO05D001784 9.7e-06 54.3 107 41.1


User provided reference genes

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