Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc23g0006090 Simmondsia chinensis HOM05D005991 ORTHO05D007408 1.2e-125 453.4 255 100.0
EL10Ac2g02410 Beta vulgaris HOM05D005991 ORTHO05D007408 7.2e-83 311.2 257 71.2
Dinv05101 Davidia involucrata HOM05D005991 ORTHO05D007408 4.4e-80 302.0 252 69.8
MSTRG.22639 Avicennia marina HOM05D005991 ORTHO05D007408 2.4e-78 296.2 258 65.9
Cfa015696 Carpinus fangiana HOM05D005991 ORTHO05D007408 6.1e-74 281.6 255 64.3
Haze_00826 Corylus avellana HOM05D005991 ORTHO05D007408 8.0e-74 281.2 255 64.3
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 1.8e-73 280.0 252 63.5
Eucgr.H04085 Eucalyptus grandis HOM05D005991 ORTHO05D007408 4.0e-73 278.9 257 61.9
MBI18_g36460_MAGBIO Magnolia biondii HOM05D005991 ORTHO05D007408 6.8e-73 278.1 237 67.1
Lalb_Chr13g0298761 Lupinus albus HOM05D005991 ORTHO05D007408 3.4e-72 275.8 254 64.6
TAR633G0953 Trochodendron aralioides HOM05D005991 ORTHO05D007408 5.7e-72 275.0 245 66.5
GSVIVG01017637001 Vitis vinifera HOM05D005991 ORTHO05D007408 5.7e-72 275.0 253 66.4
CSS0003210 Camellia sinensis var. sinensis HOM05D005991 ORTHO05D007408 1.3e-71 273.9 253 63.2
Oeu009727.1 Olea europaea HOM05D005991 ORTHO05D007408 4.9e-71 271.9 259 62.2
Lj4g0017646 Lotus japonicus HOM05D005991 ORTHO05D007408 1.4e-70 270.4 259 60.6
Rhsim02G0001600 Rhododendron simsii HOM05D005991 ORTHO05D007408 2.4e-70 269.6 254 63.0
Actinidia28298 Actinidia chinensis HOM05D005991 ORTHO05D007408 3.2e-70 269.2 251 62.2
CsaV3_6G000060 Cucumis sativus L. HOM05D005991 ORTHO05D007408 9.2e-70 267.7 250 62.0
Psat0s2692g0080 Pisum sativum HOM05D005991 ORTHO05D007408 1.2e-69 267.3 254 62.6
MELO3C021248.2 Cucumis melo HOM05D005991 ORTHO05D007408 2.7e-69 266.2 249 61.0
PGR004G0142 Punica granatum HOM05D005991 ORTHO05D007408 3.5e-69 265.8 224 67.0
Sed0009947 Sechium edule HOM05D005991 ORTHO05D007408 1.3e-68 263.8 250 59.6
Medtr4g123060 Medicago truncatula HOM05D005991 ORTHO05D007408 2.3e-68 263.1 227 64.3
ClCG06G004330 Citrullus lanatus HOM05D005991 ORTHO05D007408 3.9e-68 262.3 252 61.1
vmacro19301 Vaccinium macrocarpon HOM05D005991 ORTHO05D007408 3.9e-68 262.3 256 61.7
Ca_21401_v3 Cicer arietinum L. HOM05D005991 ORTHO05D007408 6.6e-68 261.5 254 62.2
Potri.010G151300 Populus trichocarpa HOM05D005991 ORTHO05D007408 1.9e-67 260.0 247 62.8
TPR.G12610 Trifolium pratense HOM05D005991 ORTHO05D007408 1.9e-67 260.0 254 63.0
Lj9A696T49 Lonicera japonica HOM05D005991 ORTHO05D007408 3.3e-67 259.2 260 61.2
Ah.11g042100 Amaranthus hybridus HOM05D005991 ORTHO05D007408 4.3e-67 258.8 236 64.8
Nn3g21864 Nelumbo nucifera HOM05D005991 ORTHO05D007408 4.3e-67 258.8 256 62.1
Glyma.07G232800 Glycine max HOM05D005991 ORTHO05D007408 5.6e-67 258.5 248 62.5
Migut.I00898 Erythranthe guttata HOM05D005991 ORTHO05D007408 9.5e-67 257.7 259 59.5
RcHm_v2.0_Chr4g0426321 Rosa chinensis HOM05D005991 ORTHO05D007408 2.8e-66 256.1 254 60.2
Manes.03G209000 Manihot esculenta HOM05D005991 ORTHO05D007408 6.1e-66 255.0 248 62.1
Aqoxy7G00454 Aquilegia oxysepala HOM05D005991 ORTHO05D007408 1.4e-65 253.8 267 60.3
DCAR_019078 Daucus carota HOM05D005991 ORTHO05D007408 3.1e-65 252.7 255 59.6
Phvul.003G118700 Phaseolus vulgaris HOM05D005991 ORTHO05D007408 4.0e-65 252.3 248 61.7
MD13G1147500 Malus domestica HOM05D005991 ORTHO05D007408 1.5e-64 250.4 263 58.2
TWI53G1476 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 1.5e-64 250.4 251 62.2
TWI73G0156 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 2.0e-64 250.0 250 61.6
VMungo1215G0582 Vigna mungo HOM05D005991 ORTHO05D007408 2.0e-64 250.0 248 60.9
FAN12G0391 Fragaria x ananassa HOM05D005991 ORTHO05D007408 2.6e-64 249.6 238 61.3
FAN07G2713 Fragaria x ananassa HOM05D005991 ORTHO05D007408 3.4e-64 249.2 238 61.3
unitig_32.g11589 Utricularia gibba HOM05D005991 ORTHO05D007408 3.4e-64 249.2 237 60.3
FAN17G2933 Fragaria x ananassa HOM05D005991 ORTHO05D007408 4.4e-64 248.8 252 59.1
TAR362G0621 Trochodendron aralioides HOM05D005991 ORTHO05D007408 4.4e-64 248.8 256 60.9
FvH4_4g20890 Fragaria vesca HOM05D005991 ORTHO05D007408 5.8e-64 248.4 252 59.5
Glyma.17G037800 Glycine max HOM05D005991 ORTHO05D007408 5.8e-64 248.4 248 61.7
arahy.Tifrunner.gnm1.ann1.ELD4MI Arachis hypogaea HOM05D005991 ORTHO05D007408 7.5e-64 248.1 253 61.7
arahy.Tifrunner.gnm1.ann1.5JMV2K Arachis hypogaea HOM05D005991 ORTHO05D007408 2.9e-63 246.1 250 61.6
Cc10_g13510 Coffea canephora HOM05D005991 ORTHO05D007408 1.1e-62 244.2 259 59.5
TWI09G0093 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 1.4e-62 243.8 251 59.8
Nitab4.5_0013885g0020 Nicotiana tabacum HOM05D005991 ORTHO05D007408 1.9e-62 243.4 251 57.0
Cpa.g.sc146.66 Carica papaya HOM05D005991 ORTHO05D007408 2.4e-62 243.0 247 59.9
Gohir.A02G056400 Gossypium hirsutum HOM05D005991 ORTHO05D007408 9.2e-62 241.1 277 56.0
QL06p013384 Quercus lobata HOM05D005991 ORTHO05D007408 1.2e-61 240.7 256 60.9
Actinidia18486 Actinidia chinensis HOM05D005991 ORTHO05D007408 2.0e-61 240.0 215 64.2
Nitab4.5_0003374g0080 Nicotiana tabacum HOM05D005991 ORTHO05D007408 2.7e-61 239.6 251 59.0
Sopen04g029760 Solanum pennellii HOM05D005991 ORTHO05D007408 2.7e-61 239.6 247 57.5
Atru.chr4.3094 Acer truncatum HOM05D005991 ORTHO05D007408 4.6e-61 238.8 255 56.5
Gohir.D02G061600 Gossypium hirsutum HOM05D005991 ORTHO05D007408 4.6e-61 238.8 277 55.2
Duzib151G0057 Durio zibethinus HOM05D005991 ORTHO05D007408 6.0e-61 238.4 219 64.8
Gorai.005G069300 Gossypium raimondii HOM05D005991 ORTHO05D007408 7.8e-61 238.0 277 55.2
PGSC0003DMG400030844 Solanum tuberosum HOM05D005991 ORTHO05D007408 1.7e-60 236.9 251 56.6
Thecc.04G307900 Theobroma cacao HOM05D005991 ORTHO05D007408 1.7e-60 236.9 313 51.4
Cc00_g31090 Coffea canephora HOM05D005991 ORTHO05D007408 3.0e-60 236.1 259 57.1
Ciclev10005452m.g Citrus clementina HOM05D005991 ORTHO05D007408 8.6e-60 234.6 230 63.0
Prupe.1G111000 Prunus persica HOM05D005991 ORTHO05D007408 8.6e-60 234.6 263 56.7
arahy.Tifrunner.gnm1.ann1.KWD76U Arachis hypogaea HOM05D005991 ORTHO05D007408 1.1e-59 234.2 250 60.8
CiPaw.01G133100 Carya illinoinensis HOM05D005991 ORTHO05D007408 1.9e-59 233.4 184 72.3
CANSAT78G1707 Cannabis sativa HOM05D005991 ORTHO05D007408 4.3e-59 232.3 254 56.7
Solyc04g074800.3 Solanum lycopersicum HOM05D005991 ORTHO05D007408 4.3e-59 232.3 253 55.3
HanXRQChr16g0526201 Helianthus annuus HOM05D005991 ORTHO05D007408 2.1e-58 229.9 251 57.4
THA.LOC104827106 Tarenaya hassleriana HOM05D005991 ORTHO05D007408 2.8e-58 229.6 277 50.5
MD16G1145900 Malus domestica HOM05D005991 ORTHO05D007408 3.1e-57 226.1 225 58.2
CAN.G1173.8 Capsicum annuum HOM05D005991 ORTHO05D007408 4.0e-57 225.7 251 56.2
Os01g0328500 Oryza sativa ssp. japonica HOM05D005991 ORTHO05D007408 4.4e-56 222.2 240 54.2
Lsat_1_v5_gn_4_27741 Lactuca sativa HOM05D005991 ORTHO05D007408 5.8e-56 221.9 259 54.1
ECA234G0222 Erigeron canadensis HOM05D005991 ORTHO05D007408 1.7e-55 220.3 260 54.6
COL.COLO4_34551 Corchorus olitorius HOM05D005991 ORTHO05D007408 4.9e-55 218.8 208 64.4
ATR0693G149 Amborella trichopoda HOM05D005991 ORTHO05D007408 1.9e-54 216.9 242 57.4
HPP92_017296 Vanilla planifolia HOM05D005991 ORTHO05D007408 4.1e-54 215.7 229 57.6
Zm00001eb131050 Zea mays HOM05D005991 ORTHO05D007408 1.6e-53 213.8 230 55.7
Peaxi162Scf00139g00312 Petunia axillaris HOM05D005991 ORTHO05D007408 2.7e-53 213.0 248 53.2
Zm00001eb340570 Zea mays HOM05D005991 ORTHO05D007408 7.8e-53 211.5 218 58.7
PSO017G0870 Papaver somniferum HOM05D005991 ORTHO05D007408 1.1e-51 207.6 237 57.0
BcaB04g19640 Brassica carinata HOM05D005991 ORTHO05D007408 1.9e-51 206.8 219 54.8
Aa31LG11G8380 Aethionema arabicum HOM05D005991 ORTHO05D007408 2.5e-51 206.5 222 55.0
BcaNung02118 Brassica carinata HOM05D005991 ORTHO05D007408 3.3e-51 206.1 237 53.6
C07p40040 Brassica napus HOM05D005991 ORTHO05D007408 3.3e-51 206.1 237 53.6
Sp2g19950 Schrenkiella parvula HOM05D005991 ORTHO05D007408 3.3e-51 206.1 242 54.1
AL6G41020 Arabidopsis lyrata HOM05D005991 ORTHO05D007408 4.3e-51 205.7 240 53.3
AUR62020284 Chenopodium quinoa HOM05D005991 ORTHO05D007408 7.3e-51 204.9 257 53.3
BolC7t44538H Brassica oleracea HOM05D005991 ORTHO05D007408 1.2e-50 204.1 237 53.2
AT5G30490 Arabidopsis thaliana HOM05D005991 ORTHO05D007408 2.1e-50 203.4 223 54.3
A09p05050 Brassica napus HOM05D005991 ORTHO05D007408 3.6e-50 202.6 219 53.4
BraA09t36144Z Brassica rapa HOM05D005991 ORTHO05D007408 3.6e-50 202.6 219 53.4
PSO675G8194 Papaver somniferum HOM05D005991 ORTHO05D007408 3.6e-50 202.6 237 56.5
Sp6g09550 Schrenkiella parvula HOM05D005991 ORTHO05D007408 8.1e-50 201.4 254 51.6
CARHR185530 Cardamine hirsuta HOM05D005991 ORTHO05D007408 1.1e-49 201.1 229 52.4
C09p05460 Brassica napus HOM05D005991 ORTHO05D007408 1.4e-49 200.7 237 51.9
AUR62037721 Chenopodium quinoa HOM05D005991 ORTHO05D007408 5.2e-49 198.7 258 52.3
BcaC04g23714 Brassica carinata HOM05D005991 ORTHO05D007408 2.6e-48 196.4 236 52.5
Carub.0020s0004 Capsella rubella HOM05D005991 ORTHO05D007408 3.4e-48 196.1 240 51.2
BraA06t26732Z Brassica rapa HOM05D005991 ORTHO05D007408 7.6e-48 194.9 238 52.5
A06p38170 Brassica napus HOM05D005991 ORTHO05D007408 1.3e-47 194.1 238 52.1
BolC9t53475H Brassica oleracea HOM05D005991 ORTHO05D007408 4.9e-47 192.2 260 48.5
Thhalv10004825m.g Eutrema salsugineum HOM05D005991 ORTHO05D007408 1.1e-46 191.0 228 50.4
BcaC06g30693 Brassica carinata HOM05D005991 ORTHO05D007408 1.6e-42 177.2 229 49.8
PGR119G0116 Punica granatum HOM05D005991 ORTHO05D007408 8.1e-42 174.9 122 73.8
SEGI_07358 Sequoiadendron giganteum HOM05D005991 ORTHO05D007408 3.5e-37 159.5 251 45.0
arahy.Tifrunner.gnm1.ann1.FWR109 Arachis hypogaea HOM05D005991 ORTHO05D007408 2.4e-33 146.7 127 67.7
Mapoly0030s0047 Marchantia polymorpha HOM05D005991 ORTHO05D007408 2.2e-31 140.2 264 37.1
CDE05G0304 Ceratophyllum demersum HOM05D005991 ORTHO05D007408 9.3e-30 134.8 167 51.5
CSS0020858 Camellia sinensis var. sinensis HOM05D005991 ORTHO05D007408 9.6e-27 124.8 133 55.6
Cre14.g632600 Chlamydomonas reinhardtii HOM05D005991 ORTHO05D007408 2.8e-26 123.2 167 45.5
Pp3c5_15500 Physcomitrium patens HOM05D005991 ORTHO05D007408 1.4e-25 120.9 246 36.6
AagrBONN_evm.TU.Sc2ySwM_117.1275 Anthoceros agrestis HOM05D005991 ORTHO05D007408 6.9e-25 118.6 155 53.5
CBR_g56129 Chara braunii HOM05D005991 ORTHO05D007408 1.5e-24 117.5 131 49.6
SMO203G0019 Selaginella moellendorffii HOM05D005991 ORTHO05D007408 8.4e-23 111.7 230 36.5
Actinidia31584 Actinidia chinensis HOM05D005991 ORTHO05D007408 3.1e-17 93.2 214 40.7
MCO08G234 Micromonas commoda HOM05D005991 ORTHO05D007408 1.1e-11 74.7 280 29.3
Sabra10G0116500 Salix brachista HOM05D005991 ORTHO05D007408 8.2e-10 68.6 119 42.9
PRCOL_00003370 Prasinoderma coloniale HOM05D005991 ORTHO05D007408 3.1e-09 66.6 176 34.7
GSVIVG01017610001 Vitis vinifera HOM05D005991 ORTHO05D007408 7.6e-08 62.0 134 40.3


User provided reference genes

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