Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc23g0005920 Simmondsia chinensis HOM05D007963 ORTHO05D009967 3.2e-66 255.0 133 100.0
vmacro13678 Vaccinium macrocarpon HOM05D007963 ORTHO05D009967 9.8e-23 110.5 120 53.3
Potri.009G059100 Populus trichocarpa HOM05D007963 ORTHO05D009967 4.8e-22 108.2 120 56.7
Duzib133G0999 Durio zibethinus HOM05D007963 ORTHO05D009967 6.3e-22 107.8 122 50.0
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 2.4e-21 105.9 121 48.8
FvH4_5g32100 Fragaria vesca HOM05D007963 ORTHO05D009967 2.4e-21 105.9 124 49.2
Thecc.01G408600 Theobroma cacao HOM05D007963 ORTHO05D009967 3.1e-21 105.5 123 50.4
Nn2g15279 Nelumbo nucifera HOM05D007963 ORTHO05D009967 2.0e-20 102.8 91 59.3
CiPaw.14G001400 Carya illinoinensis HOM05D007963 ORTHO05D009967 5.9e-20 101.3 101 54.5
RcHm_v2.0_Chr7g0228141 Rosa chinensis HOM05D007963 ORTHO05D009967 1.0e-19 100.5 124 47.6
CiPaw.13G006800 Carya illinoinensis HOM05D007963 ORTHO05D009967 2.9e-19 99.0 94 54.3
Gohir.A08G143400 Gossypium hirsutum HOM05D007963 ORTHO05D009967 2.9e-19 99.0 60 75.0
Gohir.D08G164400 Gossypium hirsutum HOM05D007963 ORTHO05D009967 2.9e-19 99.0 60 75.0
Gorai.004G171400 Gossypium raimondii HOM05D007963 ORTHO05D009967 2.9e-19 99.0 60 75.0
QL04p008099 Quercus lobata HOM05D007963 ORTHO05D009967 2.9e-19 99.0 93 54.8
QL04p008549 Quercus lobata HOM05D007963 ORTHO05D009967 2.9e-19 99.0 93 54.8
TAR369G0233 Trochodendron aralioides HOM05D007963 ORTHO05D009967 3.8e-19 98.6 117 47.9
Manes.07G007300 Manihot esculenta HOM05D007963 ORTHO05D009967 5.0e-19 98.2 109 48.6
PGSC0003DMG400023738 Solanum tuberosum HOM05D007963 ORTHO05D009967 5.0e-19 98.2 91 54.9
AUR62009397 Chenopodium quinoa HOM05D007963 ORTHO05D009967 8.6e-19 97.4 94 54.3
Sopen10g031160 Solanum pennellii HOM05D007963 ORTHO05D009967 1.1e-18 97.1 91 54.9
Rhsim07G0056600 Rhododendron simsii HOM05D007963 ORTHO05D009967 2.5e-18 95.9 60 75.0
Prupe.2G017200 Prunus persica HOM05D007963 ORTHO05D009967 3.3e-18 95.5 74 63.5
Migut.B01286 Erythranthe guttata HOM05D007963 ORTHO05D009967 9.5e-18 94.0 124 44.4
Hma1.2p1_2160F.1_g315600 Hydrangea macrophylla HOM05D007963 ORTHO05D009967 1.2e-17 93.6 75 60.0
MBI04_g34432_MAGBIO Magnolia biondii HOM05D007963 ORTHO05D009967 1.2e-17 93.6 91 54.9
CSS0005909 Camellia sinensis var. sinensis HOM05D007963 ORTHO05D009967 1.6e-17 93.2 73 58.9
DCAR_003219 Daucus carota HOM05D007963 ORTHO05D009967 2.1e-17 92.8 119 45.4
MD02G1308200 Malus domestica HOM05D007963 ORTHO05D009967 6.1e-17 91.3 74 62.2
Ciclev10033085m.g Citrus clementina HOM05D007963 ORTHO05D009967 8.0e-17 90.9 98 49.0
SalBow5G1437 Salvia bowleyana HOM05D007963 ORTHO05D009967 1.0e-16 90.5 94 51.1
SalBow5G4167 Salvia bowleyana HOM05D007963 ORTHO05D009967 1.0e-16 90.5 94 51.1
VMungo1127G0040 Vigna mungo HOM05D007963 ORTHO05D009967 1.4e-16 90.1 123 40.7
Sed0005364 Sechium edule HOM05D007963 ORTHO05D009967 1.8e-16 89.7 85 52.9
Os03g0217000 Oryza sativa ssp. japonica HOM05D007963 ORTHO05D009967 2.3e-16 89.4 55 72.7
ClCG10G012280 Citrullus lanatus HOM05D007963 ORTHO05D009967 5.2e-16 88.2 116 44.8
MSTRG.20574 Avicennia marina HOM05D007963 ORTHO05D009967 6.8e-16 87.8 89 55.1
Haze_03176 Corylus avellana HOM05D007963 ORTHO05D009967 6.8e-16 87.8 119 46.2
Eucgr.J01210 Eucalyptus grandis HOM05D007963 ORTHO05D009967 6.8e-16 87.8 97 47.4
Lsat_1_v5_gn_1_105740 Lactuca sativa HOM05D007963 ORTHO05D009967 6.8e-16 87.8 83 51.8
Sabra09G0043500 Salix brachista HOM05D007963 ORTHO05D009967 8.9e-16 87.4 84 60.7
Atru.chr11.2601 Acer truncatum HOM05D007963 ORTHO05D009967 2.0e-15 86.3 111 44.1
Zm00001eb400040 Zea mays HOM05D007963 ORTHO05D009967 2.0e-15 86.3 53 73.6
Cfa010795 Carpinus fangiana HOM05D007963 ORTHO05D009967 4.4e-15 85.1 95 49.5
HanXRQChr01g0016481 Helianthus annuus HOM05D007963 ORTHO05D009967 4.4e-15 85.1 126 41.3
Sed0018324 Sechium edule HOM05D007963 ORTHO05D009967 4.4e-15 85.1 100 44.0
Lj3g0025556 Lotus japonicus HOM05D007963 ORTHO05D009967 7.5e-15 84.3 78 53.8
COL.COLO4_04871 Corchorus olitorius HOM05D007963 ORTHO05D009967 1.3e-14 83.6 146 43.8
MELO3C023985.2 Cucumis melo HOM05D007963 ORTHO05D009967 1.3e-14 83.6 125 41.6
CsaV3_3G032070 Cucumis sativus L. HOM05D007963 ORTHO05D009967 1.3e-14 83.6 125 40.8
SGA_v2.0_scaffold4G02518 Striga asiatica HOM05D007963 ORTHO05D009967 1.3e-14 83.6 81 54.3
Glyma.12G008400 Glycine max HOM05D007963 ORTHO05D009967 2.2e-14 82.8 99 48.5
unitig_61.g26362 Utricularia gibba HOM05D007963 ORTHO05D009967 8.3e-14 80.9 58 62.1
Phvul.011G012801 Phaseolus vulgaris HOM05D007963 ORTHO05D009967 1.8e-13 79.7 60 58.3
Lalb_Chr20g0107921 Lupinus albus HOM05D007963 ORTHO05D009967 2.4e-13 79.3 77 51.9
TWI09G0461 Tripterygium wilfordii HOM05D007963 ORTHO05D009967 4.1e-13 78.6 73 58.9
Medtr4g039540 Medicago truncatula HOM05D007963 ORTHO05D009967 2.0e-12 76.3 98 45.9
Cpa.g.sc125.16 Carica papaya HOM05D007963 ORTHO05D009967 1.0e-11 73.9 75 58.7
SEGI_13442 Sequoiadendron giganteum HOM05D007963 ORTHO05D009967 1.9e-10 69.7 46 67.4
SEGI_37070 Sequoiadendron giganteum HOM05D007963 ORTHO05D009967 1.9e-10 69.7 46 67.4
BcaNung06087 Brassica carinata HOM05D007963 ORTHO05D009967 3.6e-09 65.5 91 41.8
A09p45130 Brassica napus HOM05D007963 ORTHO05D009967 1.0e-08 63.9 103 37.9
BraA09t39974Z Brassica rapa HOM05D007963 ORTHO05D009967 1.0e-08 63.9 103 37.9
CARHR161770 Cardamine hirsuta HOM05D007963 ORTHO05D009967 1.4e-08 63.5 62 51.6
BolC8t50349H Brassica oleracea HOM05D007963 ORTHO05D009967 1.8e-08 63.2 90 40.0
BcaB01g00449 Brassica carinata HOM05D007963 ORTHO05D009967 4.0e-08 62.0 88 39.8
C08p27320 Brassica napus HOM05D007963 ORTHO05D009967 4.0e-08 62.0 88 39.8
A04p07310 Brassica napus HOM05D007963 ORTHO05D009967 6.8e-08 61.2 62 50.0
BraA04t16426Z Brassica rapa HOM05D007963 ORTHO05D009967 6.8e-08 61.2 62 50.0
ATR0332G088 Amborella trichopoda HOM05D007963 ORTHO05D009967 8.9e-08 60.8 45 60.0
BcaC02g09285 Brassica carinata HOM05D007963 ORTHO05D009967 8.9e-08 60.8 101 40.6
Thhalv10010836m.g Eutrema salsugineum HOM05D007963 ORTHO05D009967 8.9e-08 60.8 59 50.8
BcaNung06964 Brassica carinata HOM05D007963 ORTHO05D009967 1.5e-07 60.1 79 40.5
AL5G32620 Arabidopsis lyrata HOM05D007963 ORTHO05D009967 2.6e-07 59.3 58 56.9
BcaB02g08592 Brassica carinata HOM05D007963 ORTHO05D009967 4.4e-07 58.5 48 52.1
Carub.0005s1839 Capsella rubella HOM05D007963 ORTHO05D009967 4.4e-07 58.5 62 51.6
AT3G52070 Arabidopsis thaliana HOM05D007963 ORTHO05D009967 2.2e-06 56.2 47 59.6


User provided reference genes

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