Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc23g0005570 Simmondsia chinensis HOM05D003538 ORTHO05D004376 4.1e-303 1043.9 518 100.0
AUR62022058 Chenopodium quinoa HOM05D003538 ORTHO05D004376 1.3e-131 474.2 503 52.9
AUR62043933 Chenopodium quinoa HOM05D003538 ORTHO05D004376 1.3e-131 474.2 503 52.9
AUR62009165 Chenopodium quinoa HOM05D003538 ORTHO05D004376 6.5e-131 471.9 515 52.2
Hund03347 Selenicereus undatus HOM05D003538 ORTHO05D004376 1.9e-130 470.3 516 51.0
EL10Ac2g03914 Beta vulgaris HOM05D003538 ORTHO05D004376 8.0e-121 438.3 416 55.5
Ah.11g044700 Amaranthus hybridus HOM05D003538 ORTHO05D004376 2.0e-119 433.7 499 48.3
TAR626G0286 Trochodendron aralioides HOM05D003538 ORTHO05D004376 8.8e-104 381.7 539 42.3
Actinidia30305 Actinidia chinensis HOM05D003538 ORTHO05D004376 5.0e-99 365.9 482 45.2
Duzib168G2161 Durio zibethinus HOM05D003538 ORTHO05D004376 8.0e-97 358.6 530 40.8
QL02p001408 Quercus lobata HOM05D003538 ORTHO05D004376 1.7e-94 350.9 537 39.7
Hma1.2p1_0482F.1_g162640 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.8e-93 347.4 525 40.2
Atru.chr7.1041 Acer truncatum HOM05D003538 ORTHO05D004376 7.0e-93 345.5 538 37.7
Gorai.009G045900 Gossypium raimondii HOM05D003538 ORTHO05D004376 1.2e-92 344.7 494 41.3
Actinidia01196 Actinidia chinensis HOM05D003538 ORTHO05D004376 2.0e-92 344.0 489 42.9
COL.COLO4_21041 Corchorus olitorius HOM05D003538 ORTHO05D004376 4.6e-92 342.8 529 39.1
Gohir.A05G043100 Gossypium hirsutum HOM05D003538 ORTHO05D004376 4.6e-92 342.8 532 39.5
Thecc.09G052400 Theobroma cacao HOM05D003538 ORTHO05D004376 4.6e-92 342.8 388 49.5
Rhsim11G0045200 Rhododendron simsii HOM05D003538 ORTHO05D004376 1.3e-91 341.3 481 41.8
Nn6g35422 Nelumbo nucifera HOM05D003538 ORTHO05D004376 2.3e-91 340.5 545 38.9
CSS0001901 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 5.0e-91 339.3 421 45.6
CANSAT25G2654 Cannabis sativa HOM05D003538 ORTHO05D004376 3.3e-90 336.7 537 38.5
Gohir.D05G044800 Gossypium hirsutum HOM05D003538 ORTHO05D004376 2.8e-89 333.6 378 47.6
Potri.006G230900 Populus trichocarpa HOM05D003538 ORTHO05D004376 1.1e-88 331.6 501 40.9
CiPaw.16G029300 Carya illinoinensis HOM05D003538 ORTHO05D004376 2.4e-85 320.5 524 38.4
PGR044G1201 Punica granatum HOM05D003538 ORTHO05D004376 1.2e-84 318.2 416 42.5
Ciclev10007991m.g Citrus clementina HOM05D003538 ORTHO05D004376 4.6e-84 316.2 531 36.3
TWI32G0386 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 1.1e-82 311.6 499 37.7
Manes.03G047000 Manihot esculenta HOM05D003538 ORTHO05D004376 1.9e-82 310.8 380 43.9
PSO210G5813 Papaver somniferum HOM05D003538 ORTHO05D004376 2.5e-82 310.5 393 45.3
Nitab4.5_0001179g0130 Nicotiana tabacum HOM05D003538 ORTHO05D004376 4.3e-82 309.7 520 39.0
PSO210G6318 Papaver somniferum HOM05D003538 ORTHO05D004376 2.1e-81 307.4 402 44.5
Nitab4.5_0001584g0040 Nicotiana tabacum HOM05D003538 ORTHO05D004376 8.1e-81 305.4 522 37.9
Sed0023083 Sechium edule HOM05D003538 ORTHO05D004376 1.1e-80 305.1 489 37.0
Sabra06G0179100 Salix brachista HOM05D003538 ORTHO05D004376 2.3e-80 303.9 378 45.0
CsaV3_4G035550 Cucumis sativus L. HOM05D003538 ORTHO05D004376 4.4e-79 299.7 502 35.9
Lalb_Chr22g0356041 Lupinus albus HOM05D003538 ORTHO05D004376 9.9e-79 298.5 503 35.6
Lj5g0027111 Lotus japonicus HOM05D003538 ORTHO05D004376 2.2e-78 297.4 381 41.5
MBI03_g13775_MAGBIO Magnolia biondii HOM05D003538 ORTHO05D004376 1.9e-77 294.3 547 36.2
Eucgr.C03022 Eucalyptus grandis HOM05D003538 ORTHO05D004376 3.2e-77 293.5 423 40.7
Dinv36743 Davidia involucrata HOM05D003538 ORTHO05D004376 9.2e-77 292.0 555 35.7
MSTRG.11666 Avicennia marina HOM05D003538 ORTHO05D004376 1.2e-76 291.6 433 39.0
MELO3C016862.2 Cucumis melo HOM05D003538 ORTHO05D004376 1.6e-76 291.2 498 35.3
Haze_18202 Corylus avellana HOM05D003538 ORTHO05D004376 2.1e-76 290.8 553 34.9
Aqoxy7G04069 Aquilegia oxysepala HOM05D003538 ORTHO05D004376 3.5e-76 290.0 518 35.9
Cc08_g10420 Coffea canephora HOM05D003538 ORTHO05D004376 4.6e-76 289.7 472 38.6
Sopen08g019050 Solanum pennellii HOM05D003538 ORTHO05D004376 3.9e-75 286.6 502 37.8
Prupe.7G213400 Prunus persica HOM05D003538 ORTHO05D004376 6.6e-75 285.8 432 37.3
Peaxi162Scf00136g00059 Petunia axillaris HOM05D003538 ORTHO05D004376 8.6e-75 285.4 516 36.8
ClCG05G017780 Citrullus lanatus HOM05D003538 ORTHO05D004376 1.5e-74 284.6 522 34.5
Solyc08g065440.4 Solanum lycopersicum HOM05D003538 ORTHO05D004376 2.5e-74 283.9 502 37.6
Lj7C279G1 Lonicera japonica HOM05D003538 ORTHO05D004376 5.6e-74 282.7 463 40.0
ClCG03G015790 Citrullus lanatus HOM05D003538 ORTHO05D004376 8.1e-73 278.9 408 38.5
Phvul.001G034000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 1.8e-72 277.7 379 40.6
Medtr1g016740 Medicago truncatula HOM05D003538 ORTHO05D004376 3.1e-72 276.9 387 40.8
arahy.Tifrunner.gnm1.ann1.IE7M3R Arachis hypogaea HOM05D003538 ORTHO05D004376 5.2e-72 276.2 440 37.7
MELO3C015449.2 Cucumis melo HOM05D003538 ORTHO05D004376 5.2e-72 276.2 420 37.9
TPR.G13110 Trifolium pratense HOM05D003538 ORTHO05D004376 8.9e-72 275.4 450 38.0
Migut.A00144 Erythranthe guttata HOM05D003538 ORTHO05D004376 3.4e-71 273.5 533 34.0
VMungo0647G0716 Vigna mungo HOM05D003538 ORTHO05D004376 3.4e-71 273.5 420 38.3
Atru.chr7.1545 Acer truncatum HOM05D003538 ORTHO05D004376 9.9e-71 271.9 533 33.4
Hma1.2p1_0798F.1_g219590 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.3e-70 271.6 558 34.9
Hma1.2p1_1074F.1_g254274 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.3e-70 271.6 558 34.9
QL02p063126 Quercus lobata HOM05D003538 ORTHO05D004376 1.3e-70 271.6 429 38.2
Haze_25885 Corylus avellana HOM05D003538 ORTHO05D004376 3.2e-69 266.9 381 38.6
Manes.03G031601 Manihot esculenta HOM05D003538 ORTHO05D004376 4.1e-69 266.5 417 36.9
CsaV3_1G040220 Cucumis sativus L. HOM05D003538 ORTHO05D004376 1.6e-68 264.6 420 36.9
Actinidia29888 Actinidia chinensis HOM05D003538 ORTHO05D004376 2.1e-68 264.2 530 34.5
Cfa003115 Carpinus fangiana HOM05D003538 ORTHO05D004376 2.7e-68 263.8 511 33.9
Glyma.17G230200 Glycine max HOM05D003538 ORTHO05D004376 4.6e-68 263.1 425 38.1
Sed0013907 Sechium edule HOM05D003538 ORTHO05D004376 6.0e-68 262.7 409 38.9
Dinv27976 Davidia involucrata HOM05D003538 ORTHO05D004376 2.3e-67 260.8 272 52.2
Sed0020375 Sechium edule HOM05D003538 ORTHO05D004376 7.3e-66 255.8 374 38.8
Lj7A672T62 Lonicera japonica HOM05D003538 ORTHO05D004376 9.6e-66 255.4 501 35.9
Glyma.14G093500 Glycine max HOM05D003538 ORTHO05D004376 1.6e-65 254.6 415 36.4
Ca_13176_v3 Cicer arietinum L. HOM05D003538 ORTHO05D004376 2.1e-65 254.2 428 34.8
CSS0008213 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 8.1e-65 252.3 545 32.5
CsaV3_UNG062480 Cucumis sativus L. HOM05D003538 ORTHO05D004376 3.1e-64 250.4 446 34.8
TWI34G1305 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 4.0e-64 250.0 433 37.2
CiPaw.04G152000 Carya illinoinensis HOM05D003538 ORTHO05D004376 5.2e-64 249.6 415 37.6
vmacro00153 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 6.9e-64 249.2 449 36.1
Thecc.09G092900 Theobroma cacao HOM05D003538 ORTHO05D004376 2.0e-63 247.7 384 38.0
Eucgr.C03664 Eucalyptus grandis HOM05D003538 ORTHO05D004376 2.6e-63 247.3 394 36.5
Gorai.001G010900 Gossypium raimondii HOM05D003538 ORTHO05D004376 5.8e-63 246.1 426 36.2
Ciclev10007935m.g Citrus clementina HOM05D003538 ORTHO05D004376 7.6e-63 245.7 389 36.5
Rhsim03G0234300 Rhododendron simsii HOM05D003538 ORTHO05D004376 7.6e-63 245.7 424 36.1
Duzib168G1022 Durio zibethinus HOM05D003538 ORTHO05D004376 1.7e-62 244.6 381 37.3
arahy.Tifrunner.gnm1.ann1.QX44E6 Arachis hypogaea HOM05D003538 ORTHO05D004376 2.9e-62 243.8 485 33.8
Aa31LG3G15420 Aethionema arabicum HOM05D003538 ORTHO05D004376 4.9e-62 243.0 379 38.3
GSVIVG01015234001 Vitis vinifera HOM05D003538 ORTHO05D004376 8.4e-62 242.3 534 33.0
Gohir.D07G010500 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.4e-61 241.5 421 35.9
Lsat_1_v5_gn_3_24260 Lactuca sativa HOM05D003538 ORTHO05D004376 3.2e-61 240.4 505 33.9
FvH4_1g07060 Fragaria vesca HOM05D003538 ORTHO05D004376 5.4e-61 239.6 382 37.2
MD02G1074500 Malus domestica HOM05D003538 ORTHO05D004376 5.4e-61 239.6 408 35.8
CANSAT56G3152 Cannabis sativa HOM05D003538 ORTHO05D004376 7.1e-61 239.2 390 35.6
Manes.03G034901 Manihot esculenta HOM05D003538 ORTHO05D004376 2.1e-60 237.7 415 34.7
arahy.Tifrunner.gnm1.ann1.X6QCD5 Arachis hypogaea HOM05D003538 ORTHO05D004376 2.7e-60 237.3 392 37.2
FAN19G1852 Fragaria x ananassa HOM05D003538 ORTHO05D004376 3.5e-60 236.9 372 37.4
PGSC0003DMG400002203 Solanum tuberosum HOM05D003538 ORTHO05D004376 3.5e-60 236.9 343 40.2
Cc06_g11090 Coffea canephora HOM05D003538 ORTHO05D004376 7.8e-60 235.7 415 34.7
HPP92_009156 Vanilla planifolia HOM05D003538 ORTHO05D004376 2.3e-59 234.2 384 34.6
Glyma.07G128300 Glycine max HOM05D003538 ORTHO05D004376 3.9e-59 233.4 528 31.8
RcHm_v2.0_Chr2g0092961 Rosa chinensis HOM05D003538 ORTHO05D004376 6.6e-59 232.6 383 36.3
arahy.Tifrunner.gnm1.ann1.60DKDN Arachis hypogaea HOM05D003538 ORTHO05D004376 8.7e-59 232.3 536 32.6
FAN26G3060 Fragaria x ananassa HOM05D003538 ORTHO05D004376 9.6e-58 228.8 393 35.9
Medtr6g091790 Medicago truncatula HOM05D003538 ORTHO05D004376 2.8e-57 227.3 521 32.4
PGSC0003DMG400008432 Solanum tuberosum HOM05D003538 ORTHO05D004376 3.6e-57 226.9 361 36.0
Lsat_1_v5_gn_8_87540 Lactuca sativa HOM05D003538 ORTHO05D004376 6.2e-57 226.1 394 34.0
Glyma.01G003600 Glycine max HOM05D003538 ORTHO05D004376 8.1e-57 225.7 528 32.2
AT5G11780 Arabidopsis thaliana HOM05D003538 ORTHO05D004376 4.0e-56 223.4 381 37.3
Thhalv10013348m.g Eutrema salsugineum HOM05D003538 ORTHO05D004376 4.0e-56 223.4 378 35.7
HanXRQChr06g0173831 Helianthus annuus HOM05D003538 ORTHO05D004376 5.3e-56 223.0 429 35.4
Lj2g0016122 Lotus japonicus HOM05D003538 ORTHO05D004376 1.2e-55 221.9 523 31.7
SalBow1G0256 Salvia bowleyana HOM05D003538 ORTHO05D004376 4.5e-55 219.9 547 31.6
Lalb_Chr24g0393871 Lupinus albus HOM05D003538 ORTHO05D004376 9.9e-55 218.8 466 33.9
Phvul.004G172000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 9.9e-55 218.8 528 32.4
CARHR201410 Cardamine hirsuta HOM05D003538 ORTHO05D004376 1.3e-54 218.4 379 36.7
HanXRQChr02g0044571 Helianthus annuus HOM05D003538 ORTHO05D004376 2.9e-54 217.2 542 30.1
Sopen07g015920 Solanum pennellii HOM05D003538 ORTHO05D004376 3.8e-54 216.9 538 31.8
AL6G22530 Arabidopsis lyrata HOM05D003538 ORTHO05D004376 6.4e-54 216.1 384 36.7
VMungo0464G1250 Vigna mungo HOM05D003538 ORTHO05D004376 1.4e-53 214.9 525 29.9
Carub.0006s1031 Capsella rubella HOM05D003538 ORTHO05D004376 1.9e-53 214.5 380 36.1
Gohir.A07G010200 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.6e-52 211.5 375 36.8
Medtr6g091900 Medicago truncatula HOM05D003538 ORTHO05D004376 7.9e-52 209.1 385 34.0
ECA236G1610 Erigeron canadensis HOM05D003538 ORTHO05D004376 1.0e-51 208.8 386 35.5
CDE02G0844 Ceratophyllum demersum HOM05D003538 ORTHO05D004376 1.3e-51 208.4 471 31.4
FAN23G1479 Fragaria x ananassa HOM05D003538 ORTHO05D004376 6.7e-51 206.1 390 33.8
MSTRG.26404 Avicennia marina HOM05D003538 ORTHO05D004376 5.6e-50 203.0 409 32.0
BraA10t44658Z Brassica rapa HOM05D003538 ORTHO05D004376 2.1e-49 201.1 400 36.5
A10p25960 Brassica napus HOM05D003538 ORTHO05D004376 6.9e-48 196.1 401 36.2
THA.LOC104814609 Tarenaya hassleriana HOM05D003538 ORTHO05D004376 9.0e-48 195.7 380 33.2
vmacro06276 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 1.2e-47 195.3 456 31.6
SalBow4G1879 Salvia bowleyana HOM05D003538 ORTHO05D004376 2.6e-47 194.1 426 31.9
BolC9t59332H Brassica oleracea HOM05D003538 ORTHO05D004376 3.8e-46 190.3 403 34.7
C09p65040 Brassica napus HOM05D003538 ORTHO05D004376 6.4e-46 189.5 401 34.7
Aa31LG8G16630 Aethionema arabicum HOM05D003538 ORTHO05D004376 1.4e-45 188.3 360 33.6
BcaC04g19195 Brassica carinata HOM05D003538 ORTHO05D004376 1.4e-45 188.3 399 34.6
Manes.03G031262 Manihot esculenta HOM05D003538 ORTHO05D004376 7.1e-45 186.0 278 39.9
Manes.03G030833 Manihot esculenta HOM05D003538 ORTHO05D004376 1.2e-44 185.3 273 40.7
Manes.03G031366 Manihot esculenta HOM05D003538 ORTHO05D004376 4.6e-44 183.3 273 40.3
Cpa.g.sc7.247 Carica papaya HOM05D003538 ORTHO05D004376 1.3e-43 181.8 277 41.9
Zm00001eb161340 Zea mays HOM05D003538 ORTHO05D004376 1.9e-42 177.9 547 28.5
SalBow4G0582 Salvia bowleyana HOM05D003538 ORTHO05D004376 1.4e-40 171.8 253 38.7
Medtr6g092160 Medicago truncatula HOM05D003538 ORTHO05D004376 1.5e-39 168.3 279 36.6
unitig_699.g19305 Utricularia gibba HOM05D003538 ORTHO05D004376 2.6e-39 167.5 392 30.9
Zm00001eb357710 Zea mays HOM05D003538 ORTHO05D004376 3.8e-38 163.7 529 28.0
SGA_v2.0_scaffold734G53534 Striga asiatica HOM05D003538 ORTHO05D004376 2.1e-36 157.9 261 37.2
GSVIVG01035358001 Vitis vinifera HOM05D003538 ORTHO05D004376 1.1e-34 152.1 273 38.1
Sc18g0001860 Simmondsia chinensis HOM05D003538 ORTHO05D004376 1.8e-32 144.8 283 32.9
Psat6g019320 Pisum sativum HOM05D003538 ORTHO05D004376 4.1e-32 143.7 419 26.7
FAN26G2436 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.7e-30 138.3 243 37.9
ECA246G1935 Erigeron canadensis HOM05D003538 ORTHO05D004376 6.7e-27 126.3 270 33.3
DCAR_011998 Daucus carota HOM05D003538 ORTHO05D004376 1.9e-26 124.8 201 37.3
Oeu018651.1 Olea europaea HOM05D003538 ORTHO05D004376 2.9e-22 110.9 267 29.6
SEGI_33762 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 6.5e-22 109.8 317 28.7
ATR0789G162 Amborella trichopoda HOM05D003538 ORTHO05D004376 8.5e-22 109.4 259 27.4
Hma1.2p1_0798F.1_g219600 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.4e-21 108.6 261 31.4
Solyc07g032260.3 Solanum lycopersicum HOM05D003538 ORTHO05D004376 1.2e-20 105.5 274 31.4
Medtr6g092190 Medicago truncatula HOM05D003538 ORTHO05D004376 2.6e-18 97.8 259 29.3
Os01g0600300 Oryza sativa ssp. japonica HOM05D003538 ORTHO05D004376 7.4e-18 96.3 152 34.9
ATR0789G133 Amborella trichopoda HOM05D003538 ORTHO05D004376 2.4e-16 91.3 122 42.6
Thecc.06G128700 Theobroma cacao HOM05D003538 ORTHO05D004376 2.2e-14 84.7 137 38.0
RcHm_v2.0_Chr4g0406051 Rosa chinensis HOM05D003538 ORTHO05D004376 2.9e-14 84.3 205 29.3
DCAR_004434 Daucus carota HOM05D003538 ORTHO05D004376 3.8e-14 84.0 133 37.6
Oeu039611.1 Olea europaea HOM05D003538 ORTHO05D004376 7.2e-13 79.7 107 36.4
RcHm_v2.0_Chr4g0425381 Rosa chinensis HOM05D003538 ORTHO05D004376 2.1e-12 78.2 205 28.8
SGA_v2.0_scaffold187G40255 Striga asiatica HOM05D003538 ORTHO05D004376 4.7e-12 77.0 214 27.1
Sopen07g015930 Solanum pennellii HOM05D003538 ORTHO05D004376 6.1e-12 76.6 237 29.1
Eucgr.L03304 Eucalyptus grandis HOM05D003538 ORTHO05D004376 3.9e-11 73.9 126 35.7
Cpa.g.sc7.246 Carica papaya HOM05D003538 ORTHO05D004376 3.7e-09 67.4 144 29.2
SEGI_10797 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 1.8e-08 65.1 112 32.1
Mapoly0075s0033 Marchantia polymorpha HOM05D003538 ORTHO05D004376 7.7e-07 59.7 388 22.9
AagrBONN_evm.TU.Sc2ySwM_344.1097 Anthoceros agrestis HOM05D003538 ORTHO05D004376 2.2e-06 58.2 368 23.6


User provided reference genes

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