Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc23g0005290 Simmondsia chinensis HOM05D005302 ORTHO05D006422 8.2e-287 989.6 459 100.0
EL10Ac2g04046 Beta vulgaris HOM05D005302 ORTHO05D006422 4.8e-194 681.4 423 74.7
AUR62009303 Chenopodium quinoa HOM05D005302 ORTHO05D006422 5.9e-192 674.5 400 76.5
Glyma.04G082500 Glycine max HOM05D005302 ORTHO05D006422 3.2e-190 668.7 386 77.7
Rhsim02G0179400 Rhododendron simsii HOM05D005302 ORTHO05D006422 7.9e-189 664.1 433 71.4
Actinidia13324 Actinidia chinensis HOM05D005302 ORTHO05D006422 3.0e-188 662.1 389 75.8
CiPaw.08G024700 Carya illinoinensis HOM05D005302 ORTHO05D006422 3.9e-188 661.8 436 69.3
Glyma.06G084100 Glycine max HOM05D005302 ORTHO05D006422 6.7e-188 661.0 371 77.9
Manes.16G072000 Manihot esculenta HOM05D005302 ORTHO05D006422 6.7e-188 661.0 429 70.6
TAR624G0168 Trochodendron aralioides HOM05D005302 ORTHO05D006422 8.7e-188 660.6 452 69.0
Nn2g11666 Nelumbo nucifera HOM05D005302 ORTHO05D006422 1.1e-187 660.2 401 74.3
CSS0024291 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 1.5e-187 659.8 388 76.5
CSS0027627 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 1.5e-187 659.8 388 76.5
Gorai.009G050600 Gossypium raimondii HOM05D005302 ORTHO05D006422 1.5e-187 659.8 368 78.5
Prupe.1G450300 Prunus persica HOM05D005302 ORTHO05D006422 1.5e-187 659.8 389 76.3
TWI34G0390 Tripterygium wilfordii HOM05D005302 ORTHO05D006422 1.9e-187 659.4 402 72.9
Cc08_g09240 Coffea canephora HOM05D005302 ORTHO05D006422 4.3e-187 658.3 440 68.6
Dinv14245 Davidia involucrata HOM05D005302 ORTHO05D006422 4.3e-187 658.3 440 69.3
Gohir.D05G049300 Gossypium hirsutum HOM05D005302 ORTHO05D006422 1.6e-186 656.4 368 78.0
Lalb_Chr08g0243151 Lupinus albus HOM05D005302 ORTHO05D006422 2.2e-186 656.0 366 77.9
Thecc.09G042800 Theobroma cacao HOM05D005302 ORTHO05D006422 3.7e-186 655.2 368 78.0
Medtr3g110160 Medicago truncatula HOM05D005302 ORTHO05D006422 6.3e-186 654.4 366 79.0
VMungo1309G1003 Vigna mungo HOM05D005302 ORTHO05D006422 8.2e-186 654.1 368 78.0
COL.COLO4_18671 Corchorus olitorius HOM05D005302 ORTHO05D006422 1.1e-185 653.7 368 77.4
Gohir.A05G047400 Gossypium hirsutum HOM05D005302 ORTHO05D006422 1.1e-185 653.7 368 77.4
GSVIVG01035645001 Vitis vinifera HOM05D005302 ORTHO05D006422 1.1e-185 653.7 399 73.7
THA.LOC104803808 Tarenaya hassleriana HOM05D005302 ORTHO05D006422 2.4e-185 652.5 368 78.0
CiPaw.07G205300 Carya illinoinensis HOM05D005302 ORTHO05D006422 4.1e-185 651.7 438 68.0
FvH4_2g35770 Fragaria vesca HOM05D005302 ORTHO05D006422 5.3e-185 651.4 394 74.1
Potri.018G040200 Populus trichocarpa HOM05D005302 ORTHO05D006422 5.3e-185 651.4 375 77.1
RcHm_v2.0_Chr6g0306001 Rosa chinensis HOM05D005302 ORTHO05D006422 6.9e-185 651.0 367 77.9
Ah.16g105570 Amaranthus hybridus HOM05D005302 ORTHO05D006422 2.0e-184 649.4 381 76.6
PGR044G1364 Punica granatum HOM05D005302 ORTHO05D006422 2.0e-184 649.4 398 72.4
MSTRG.11705 Avicennia marina HOM05D005302 ORTHO05D006422 3.4e-184 648.7 372 77.2
arahy.Tifrunner.gnm1.ann1.P7Z4SB Arachis hypogaea HOM05D005302 ORTHO05D006422 7.7e-184 647.5 366 77.6
Eucgr.C02909 Eucalyptus grandis HOM05D005302 ORTHO05D006422 2.9e-183 645.6 367 77.9
MD15G1095400 Malus domestica HOM05D005302 ORTHO05D006422 2.9e-183 645.6 370 77.6
Hma1.2p1_0393F.1_g143080 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 3.8e-183 645.2 390 74.4
Aqoxy7G03804 Aquilegia oxysepala HOM05D005302 ORTHO05D006422 1.9e-182 642.9 367 76.8
Lj1g0022106 Lotus japonicus HOM05D005302 ORTHO05D006422 2.5e-182 642.5 366 77.6
Phvul.009G108200 Phaseolus vulgaris HOM05D005302 ORTHO05D006422 2.5e-182 642.5 368 76.4
Psat5g022320 Pisum sativum HOM05D005302 ORTHO05D006422 2.5e-182 642.5 447 66.9
SGA_v2.0_scaffold103G29944 Striga asiatica HOM05D005302 ORTHO05D006422 2.5e-182 642.5 374 76.2
Duzib150G0232 Durio zibethinus HOM05D005302 ORTHO05D006422 3.2e-182 642.1 368 76.6
arahy.Tifrunner.gnm1.ann1.R6A5BY Arachis hypogaea HOM05D005302 ORTHO05D006422 4.2e-182 641.7 364 77.2
Ca_15604_v3 Cicer arietinum L. HOM05D005302 ORTHO05D006422 7.2e-182 641.0 364 77.5
Sp7g30530 Schrenkiella parvula HOM05D005302 ORTHO05D006422 9.4e-182 640.6 384 74.0
Sed0007027 Sechium edule HOM05D005302 ORTHO05D006422 1.6e-181 639.8 379 75.7
Thhalv10025006m.g Eutrema salsugineum HOM05D005302 ORTHO05D006422 4.6e-181 638.3 390 73.3
HanXRQChr08g0236291 Helianthus annuus HOM05D005302 ORTHO05D006422 4.6e-181 638.3 362 77.3
CANSAT25G0630 Cannabis sativa HOM05D005302 ORTHO05D006422 1.4e-180 636.7 374 76.7
Atru.chr7.2133 Acer truncatum HOM05D005302 ORTHO05D006422 3.0e-180 635.6 367 76.0
Carub.0007s0772 Capsella rubella HOM05D005302 ORTHO05D006422 3.9e-180 635.2 381 74.0
CARHR240760 Cardamine hirsuta HOM05D005302 ORTHO05D006422 3.9e-180 635.2 370 77.3
MELO3C011150.2 Cucumis melo HOM05D005302 ORTHO05D006422 3.9e-180 635.2 432 68.5
FAN27G3010 Fragaria x ananassa HOM05D005302 ORTHO05D006422 5.1e-180 634.8 394 72.8
CAN.G21.50 Capsicum annuum HOM05D005302 ORTHO05D006422 1.5e-179 633.3 425 67.3
SalBow4G1479 Salvia bowleyana HOM05D005302 ORTHO05D006422 1.5e-179 633.3 436 66.5
ECA246G0277 Erigeron canadensis HOM05D005302 ORTHO05D006422 2.0e-179 632.9 442 66.5
Ciclev10008169m.g Citrus clementina HOM05D005302 ORTHO05D006422 2.6e-179 632.5 367 76.0
Nitab4.5_0010908g0010 Nicotiana tabacum HOM05D005302 ORTHO05D006422 2.6e-179 632.5 447 65.1
CsaV3_2G030970 Cucumis sativus L. HOM05D005302 ORTHO05D006422 3.3e-179 632.1 432 68.1
MD08G1115600 Malus domestica HOM05D005302 ORTHO05D006422 3.3e-179 632.1 370 76.2
Peaxi162Scf00822g00210 Petunia axillaris HOM05D005302 ORTHO05D006422 3.3e-179 632.1 440 65.5
Haze_21877 Corylus avellana HOM05D005302 ORTHO05D006422 4.4e-179 631.7 497 61.4
Solyc08g068570.4 Solanum lycopersicum HOM05D005302 ORTHO05D006422 4.4e-179 631.7 373 75.1
BolC7t46379H Brassica oleracea HOM05D005302 ORTHO05D006422 5.7e-179 631.3 369 76.2
Sopen08g022330 Solanum pennellii HOM05D005302 ORTHO05D006422 9.7e-179 630.6 373 74.8
AL7G18970 Arabidopsis lyrata HOM05D005302 ORTHO05D006422 2.8e-178 629.0 385 73.0
PSO210G0275 Papaver somniferum HOM05D005302 ORTHO05D006422 3.7e-178 628.6 414 68.4
PGSC0003DMG400029051 Solanum tuberosum HOM05D005302 ORTHO05D006422 4.8e-178 628.2 373 74.0
C07p59340 Brassica napus HOM05D005302 ORTHO05D006422 6.3e-178 627.9 393 71.8
QL12p029391 Quercus lobata HOM05D005302 ORTHO05D006422 6.3e-178 627.9 420 68.6
Sabra18G0040100 Salix brachista HOM05D005302 ORTHO05D006422 1.8e-177 626.3 435 68.7
A03p61580 Brassica napus HOM05D005302 ORTHO05D006422 2.4e-177 625.9 394 71.8
BraA03t15200Z Brassica rapa HOM05D005302 ORTHO05D006422 2.4e-177 625.9 394 71.8
Gorai.001G027200 Gossypium raimondii HOM05D005302 ORTHO05D006422 2.4e-177 625.9 373 73.7
Lsat_1_v5_gn_5_33600 Lactuca sativa HOM05D005302 ORTHO05D006422 2.4e-177 625.9 360 75.6
AT4G32770 Arabidopsis thaliana HOM05D005302 ORTHO05D006422 4.1e-177 625.2 385 72.7
PSO210G3865 Papaver somniferum HOM05D005302 ORTHO05D006422 2.0e-176 622.9 413 68.0
Gohir.A07G022700 Gossypium hirsutum HOM05D005302 ORTHO05D006422 7.7e-176 620.9 431 66.1
Gohir.D07G026100 Gossypium hirsutum HOM05D005302 ORTHO05D006422 7.7e-176 620.9 433 65.4
unitig_32.g11070 Utricularia gibba HOM05D005302 ORTHO05D006422 7.7e-176 620.9 399 69.2
Migut.A00220 Erythranthe guttata HOM05D005302 ORTHO05D006422 1.7e-175 619.8 374 71.9
Aa31LG2G17190 Aethionema arabicum HOM05D005302 ORTHO05D006422 8.5e-175 617.5 368 74.7
DCAR_003119 Daucus carota HOM05D005302 ORTHO05D006422 8.5e-175 617.5 379 72.8
Os02g0276500 Oryza sativa ssp. japonica HOM05D005302 ORTHO05D006422 1.4e-172 610.1 365 72.9
CDE08G0186 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 5.2e-172 608.2 392 68.6
Lj8C588T0 Lonicera japonica HOM05D005302 ORTHO05D006422 2.8e-170 602.4 400 69.5
AUR62041718 Chenopodium quinoa HOM05D005302 ORTHO05D006422 1.6e-168 596.7 404 69.8
FAN20G2881 Fragaria x ananassa HOM05D005302 ORTHO05D006422 8.5e-167 590.9 422 65.4
Cfa013434 Carpinus fangiana HOM05D005302 ORTHO05D006422 2.5e-166 589.3 411 66.4
FAN15G3230 Fragaria x ananassa HOM05D005302 ORTHO05D006422 4.7e-165 585.1 427 64.6
Hund19525 Selenicereus undatus HOM05D005302 ORTHO05D006422 4.7e-165 585.1 457 63.0
ClCG08G012300 Citrullus lanatus HOM05D005302 ORTHO05D006422 4.0e-164 582.0 373 71.0
ATR0315G120 Amborella trichopoda HOM05D005302 ORTHO05D006422 5.2e-164 581.6 368 70.1
CDE05G0893 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 3.3e-163 578.9 373 67.0
MBI04_g05261_MAGBIO Magnolia biondii HOM05D005302 ORTHO05D006422 1.4e-161 573.5 532 55.1
Oeu036363.2 Olea europaea HOM05D005302 ORTHO05D006422 6.5e-159 564.7 368 71.2
Nitab4.5_0000513g0060 Nicotiana tabacum HOM05D005302 ORTHO05D006422 1.9e-158 563.1 492 56.7
LjContig00226g0022694 Lotus japonicus HOM05D005302 ORTHO05D006422 2.7e-157 559.3 321 77.6
LjContig00518g0000858 Lotus japonicus HOM05D005302 ORTHO05D006422 2.7e-157 559.3 321 77.6
HPP92_005269 Vanilla planifolia HOM05D005302 ORTHO05D006422 5.7e-155 551.6 324 74.7
Cpa.g.sc7.259 Carica papaya HOM05D005302 ORTHO05D006422 3.7e-154 548.9 319 75.2
Lj1g0000494 Lotus japonicus HOM05D005302 ORTHO05D006422 8.5e-151 537.7 321 76.3
Mapoly0027s0036 Marchantia polymorpha HOM05D005302 ORTHO05D006422 1.4e-140 503.8 363 62.3
Pp3c7_470 Physcomitrium patens HOM05D005302 ORTHO05D006422 1.4e-140 503.8 363 63.6
AagrBONN_evm.TU.Sc2ySwM_368.1981 Anthoceros agrestis HOM05D005302 ORTHO05D006422 2.6e-139 499.6 358 64.0
Cfa013357 Carpinus fangiana HOM05D005302 ORTHO05D006422 4.4e-139 498.8 368 63.0
Lj1g0015489 Lotus japonicus HOM05D005302 ORTHO05D006422 3.7e-138 495.7 366 65.3
Cfa013356 Carpinus fangiana HOM05D005302 ORTHO05D006422 1.6e-133 480.3 266 78.2
Pp3c20_5100 Physcomitrium patens HOM05D005302 ORTHO05D006422 3.6e-133 479.2 364 60.7
vmacro11066 Vaccinium macrocarpon HOM05D005302 ORTHO05D006422 1.0e-132 477.6 349 66.2
Haze_21992 Corylus avellana HOM05D005302 ORTHO05D006422 5.2e-132 475.3 439 53.8
SMO351G0603 Selaginella moellendorffii HOM05D005302 ORTHO05D006422 1.1e-121 441.0 337 58.2
Hma1.2p1_1884F.1_g306470 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 3.5e-120 436.0 256 75.0
CBR_g222 Chara braunii HOM05D005302 ORTHO05D006422 4.3e-118 429.1 366 57.1
Zm00001eb237270 Zea mays HOM05D005302 ORTHO05D006422 2.1e-117 426.8 261 70.1
Lj1g0026118 Lotus japonicus HOM05D005302 ORTHO05D006422 6.2e-117 425.2 367 58.3
Cc07_g15020 Coffea canephora HOM05D005302 ORTHO05D006422 2.3e-103 380.2 210 78.6
Cre01.g013801 Chlamydomonas reinhardtii HOM05D005302 ORTHO05D006422 8.7e-87 325.1 389 42.4
Lj7A704G81 Lonicera japonica HOM05D005302 ORTHO05D006422 3.1e-76 290.0 162 77.8
Lj7A704G80 Lonicera japonica HOM05D005302 ORTHO05D006422 4.5e-67 259.6 159 70.4
CDE05G2043 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 5.1e-63 246.1 357 39.2
MCO11G337 Micromonas commoda HOM05D005302 ORTHO05D006422 6.9e-60 235.7 380 39.5
Glyma.04G082300 Glycine max HOM05D005302 ORTHO05D006422 7.4e-54 215.7 135 71.1
Hma1.2p1_0393F.1_g143090 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 1.3e-53 214.9 150 65.3
SEGI_29042 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 4.8e-53 213.0 110 80.9
Hma1.2p1_1884F.1_g306480 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 1.9e-49 201.1 125 73.6
SEGI_07805 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 9.8e-38 162.2 107 69.2
Hma1.2p1_0393F.1_g143070 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 2.5e-33 147.5 89 71.9
arahy.Tifrunner.gnm1.ann1.B6YE6K Arachis hypogaea HOM05D005302 ORTHO05D006422 3.6e-32 143.7 188 42.6
SEGI_31241 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 3.8e-26 123.6 89 60.7
FAN24G1627 Fragaria x ananassa HOM05D005302 ORTHO05D006422 1.9e-17 94.7 59 69.5
CDE05G1694 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 4.3e-17 93.6 61 65.6
Potri.006G240100 Populus trichocarpa HOM05D005302 ORTHO05D006422 7.5e-14 82.8 127 40.9
Sabra18G0041600 Salix brachista HOM05D005302 ORTHO05D006422 1.4e-12 78.6 53 69.8
CDE02G1858 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 1.1e-07 62.4 127 32.3
BcaC09g52073 Brassica carinata HOM05D002602 ORTHO05D002661 2.0e-06 58.2 41 53.7


User provided reference genes

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