Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc23g0005190 Simmondsia chinensis HOM05D003951 ORTHO05D005378 0.0e+00 1974.5 1007 100.0
Hund19527 Selenicereus undatus HOM05D003951 ORTHO05D005378 0.0e+00 1495.3 985 74.2
CSS0015540 Camellia sinensis var. sinensis HOM05D003951 ORTHO05D005378 0.0e+00 1469.9 984 74.1
Dinv30270 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1465.7 985 74.0
Hma1.2p1_0590F.1_g185010 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 0.0e+00 1460.7 985 73.0
Cfa013355 Carpinus fangiana HOM05D003951 ORTHO05D005378 0.0e+00 1456.4 985 73.3
EL10Ac2g04048 Beta vulgaris HOM05D003951 ORTHO05D005378 0.0e+00 1455.7 985 72.9
GSVIVG01035648001 Vitis vinifera HOM05D003951 ORTHO05D005378 0.0e+00 1455.7 987 73.2
TAR383G0035 Trochodendron aralioides HOM05D003951 ORTHO05D005378 0.0e+00 1451.4 985 72.4
Thecc.09G042400 Theobroma cacao HOM05D003951 ORTHO05D005378 0.0e+00 1447.2 986 72.9
Dinv14244 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1440.6 954 74.2
Atru.chr7.2135 Acer truncatum HOM05D003951 ORTHO05D005378 0.0e+00 1438.7 983 71.6
CiPaw.08G024600 Carya illinoinensis HOM05D003951 ORTHO05D005378 0.0e+00 1435.6 984 73.1
Nn2g11661 Nelumbo nucifera HOM05D003951 ORTHO05D005378 0.0e+00 1434.1 985 72.0
Manes.03G061800 Manihot esculenta HOM05D003951 ORTHO05D005378 0.0e+00 1431.8 985 71.2
Gohir.D06G093700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1422.1 984 71.4
Gorai.010G108200 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1421.4 983 71.5
Prupe.1G450600 Prunus persica HOM05D003951 ORTHO05D005378 0.0e+00 1417.5 984 71.5
Duzib187G0774 Durio zibethinus HOM05D003951 ORTHO05D005378 0.0e+00 1417.1 992 70.8
Ciclev10007348m.g Citrus clementina HOM05D003951 ORTHO05D005378 0.0e+00 1407.5 984 71.0
Aqoxy7G01531 Aquilegia oxysepala HOM05D003951 ORTHO05D005378 0.0e+00 1407.1 986 69.8
Gohir.A06G094100 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1407.1 984 70.8
Cpa.g.sc7.257 Carica papaya HOM05D003951 ORTHO05D005378 0.0e+00 1406.7 985 70.4
TWI32G0786 Tripterygium wilfordii HOM05D003951 ORTHO05D005378 0.0e+00 1406.3 985 70.1
Potri.006G240300 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1402.9 985 70.7
Gohir.D13G192700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1401.3 985 69.9
Potri.018G039800 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1401.3 985 70.3
Gohir.A13G186000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1397.1 985 69.7
Gorai.013G218700 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1396.3 985 69.3
AUR62041721 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1394.4 985 71.2
AUR62043518 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1394.4 985 71.3
MD08G1115900 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1394.0 985 70.4
MBI04_g14936_MAGBIO Magnolia biondii HOM05D003951 ORTHO05D005378 0.0e+00 1393.3 988 69.1
QL12p029450 Quercus lobata HOM05D003951 ORTHO05D005378 0.0e+00 1392.1 985 70.5
CANSAT25G2930 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1391.3 986 69.5
Lalb_Chr08g0243161 Lupinus albus HOM05D003951 ORTHO05D005378 0.0e+00 1390.9 985 68.3
RcHm_v2.0_Chr6g0305971 Rosa chinensis HOM05D003951 ORTHO05D005378 0.0e+00 1389.4 986 70.6
MD15G1095600 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1387.5 984 69.7
Glyma.04G082000 Glycine max HOM05D003951 ORTHO05D005378 0.0e+00 1386.7 985 68.6
FvH4_2g35850 Fragaria vesca HOM05D003951 ORTHO05D005378 0.0e+00 1384.4 986 69.9
Glyma.06G083700 Glycine max HOM05D003951 ORTHO05D005378 0.0e+00 1383.2 985 68.2
Sabra18G0039700 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1383.2 988 69.0
FAN15G0863 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1382.1 986 69.6
FAN27G3265 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1379.8 986 69.8
arahy.Tifrunner.gnm1.ann1.ZA6ZKK Arachis hypogaea HOM05D003951 ORTHO05D005378 0.0e+00 1379.4 983 67.8
FAN20G1017 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1379.4 986 69.7
arahy.Tifrunner.gnm1.ann1.6KB6B4 Arachis hypogaea HOM05D003951 ORTHO05D005378 0.0e+00 1378.6 983 67.5
Nitab4.5_0010350g0010 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1377.1 983 68.6
VMungo1309G1090 Vigna mungo HOM05D003951 ORTHO05D005378 0.0e+00 1375.9 986 68.0
Gohir.D08G272000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1375.1 983 69.0
Gorai.004G290400 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1374.4 983 69.0
TPR.G1335 Trifolium pratense HOM05D003951 ORTHO05D005378 0.0e+00 1372.5 985 67.9
Cc06_g04830 Coffea canephora HOM05D003951 ORTHO05D005378 0.0e+00 1371.7 987 68.8
Lj1g0011830 Lotus japonicus HOM05D003951 ORTHO05D005378 0.0e+00 1370.5 985 67.7
Psat5g022720 Pisum sativum HOM05D003951 ORTHO05D005378 0.0e+00 1370.5 983 67.5
Gohir.A08G250500 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1369.8 983 68.9
Phvul.009G107800 Phaseolus vulgaris HOM05D003951 ORTHO05D005378 0.0e+00 1369.0 985 67.4
Medtr3g110140 Medicago truncatula HOM05D003951 ORTHO05D005378 0.0e+00 1366.7 985 67.8
Nitab4.5_0000132g0420 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1364.7 983 68.7
Sabra06G0187900 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1364.4 1008 67.6
Ca_15606_v3 Cicer arietinum L. HOM05D003951 ORTHO05D005378 0.0e+00 1363.2 983 67.1
vmacro10453 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 0.0e+00 1362.8 1005 68.6
Lalb_Chr23g0269551 Lupinus albus HOM05D003951 ORTHO05D005378 0.0e+00 1359.4 983 67.2
Eucgr.C02905 Eucalyptus grandis HOM05D003951 ORTHO05D005378 0.0e+00 1357.8 984 67.8
Thhalv10012570m.g Eutrema salsugineum HOM05D003951 ORTHO05D005378 0.0e+00 1357.0 985 67.6
Peaxi162Scf01195g00118 Petunia axillaris HOM05D003951 ORTHO05D005378 0.0e+00 1352.0 985 67.2
AUR62009306 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1351.3 985 69.1
Sp6g32040 Schrenkiella parvula HOM05D003951 ORTHO05D005378 0.0e+00 1350.5 985 67.2
Nitab4.5_0008726g0020 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1349.7 983 67.3
PGR044G0887 Punica granatum HOM05D003951 ORTHO05D005378 0.0e+00 1349.0 984 68.1
CARHR201660 Cardamine hirsuta HOM05D003951 ORTHO05D005378 0.0e+00 1346.6 983 67.2
MSTRG.19211 Avicennia marina HOM05D003951 ORTHO05D005378 0.0e+00 1345.5 985 66.9
BcaNung01934 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1345.5 985 67.0
C02p05210 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1342.4 984 67.2
BcaC03g13375 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1340.1 984 66.8
PSO210G7231 Papaver somniferum HOM05D003951 ORTHO05D005378 0.0e+00 1340.1 986 67.4
DCAR_004489 Daucus carota HOM05D003951 ORTHO05D005378 0.0e+00 1339.7 1082 63.6
ECA233G3193 Erigeron canadensis HOM05D003951 ORTHO05D005378 0.0e+00 1339.3 954 69.2
Oeu038879.1 Olea europaea HOM05D003951 ORTHO05D005378 0.0e+00 1336.6 985 66.3
PSO210G0075 Papaver somniferum HOM05D003951 ORTHO05D005378 0.0e+00 1336.2 986 67.2
A10p26200 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1335.9 985 66.6
Sopen09g003410 Solanum pennellii HOM05D003951 ORTHO05D005378 0.0e+00 1335.9 986 66.2
BolC2t06471H Brassica oleracea HOM05D003951 ORTHO05D005378 0.0e+00 1335.5 998 66.2
Migut.J00480 Erythranthe guttata HOM05D003951 ORTHO05D005378 0.0e+00 1335.1 983 66.0
Solyc09g008610.4 Solanum lycopersicum HOM05D003951 ORTHO05D005378 0.0e+00 1333.2 983 66.0
AL6G22230 Arabidopsis lyrata HOM05D003951 ORTHO05D005378 0.0e+00 1332.4 983 66.5
BcaB08g37043 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1332.0 985 66.4
AT5G11560 Arabidopsis thaliana HOM05D003951 ORTHO05D005378 0.0e+00 1326.6 983 66.4
C09p65250 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1326.6 986 66.3
MELO3C011151.2 Cucumis melo HOM05D003951 ORTHO05D005378 0.0e+00 1326.6 987 66.3
HanXRQChr08g0221151 Helianthus annuus HOM05D003951 ORTHO05D005378 0.0e+00 1325.5 988 67.3
PGSC0003DMG400012982 Solanum tuberosum HOM05D003951 ORTHO05D005378 0.0e+00 1325.5 983 65.7
BcaC04g19214 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1325.1 986 66.2
Carub.0006s1003 Capsella rubella HOM05D003951 ORTHO05D005378 0.0e+00 1324.3 983 66.3
BraA10t44677Z Brassica rapa HOM05D003951 ORTHO05D005378 0.0e+00 1323.9 1005 65.3
THA.LOC104814774 Tarenaya hassleriana HOM05D003951 ORTHO05D005378 0.0e+00 1323.9 985 66.3
CsaV3_2G030980 Cucumis sativus L. HOM05D003951 ORTHO05D005378 0.0e+00 1322.8 987 65.9
CANSAT56G2409 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1322.4 993 67.0
ClCG08G012310 Citrullus lanatus HOM05D003951 ORTHO05D005378 0.0e+00 1320.8 993 65.8
Lsat_1_v5_gn_6_63741 Lactuca sativa HOM05D003951 ORTHO05D005378 0.0e+00 1320.8 1018 65.3
Sed0024259 Sechium edule HOM05D003951 ORTHO05D005378 0.0e+00 1317.4 987 65.8
Sed0007642 Sechium edule HOM05D003951 ORTHO05D005378 0.0e+00 1314.7 987 65.9
CANSAT56G0789 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1312.7 993 67.0
Oeu017004.2 Olea europaea HOM05D003951 ORTHO05D005378 0.0e+00 1303.5 1080 61.2
BolC9t59353H Brassica oleracea HOM05D003951 ORTHO05D005378 0.0e+00 1303.1 1012 64.3
SGA_v2.0_scaffold657G53382 Striga asiatica HOM05D003951 ORTHO05D005378 0.0e+00 1302.0 990 64.4
Ah.16g105420 Amaranthus hybridus HOM05D003951 ORTHO05D005378 0.0e+00 1299.3 1014 66.1
SalBow3G1921 Salvia bowleyana HOM05D003951 ORTHO05D005378 0.0e+00 1298.5 984 65.0
COL.COLO4_18674 Corchorus olitorius HOM05D003951 ORTHO05D005378 0.0e+00 1297.0 900 71.8
ATR0315G102 Amborella trichopoda HOM05D003951 ORTHO05D005378 0.0e+00 1288.9 986 64.5
CAN.G1759.1 Capsicum annuum HOM05D003951 ORTHO05D005378 0.0e+00 1286.6 952 66.6
CDE09G1231 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 0.0e+00 1286.6 977 64.1
BraA02t05087Z Brassica rapa HOM05D003951 ORTHO05D005378 0.0e+00 1273.1 1000 64.0
Aa31LG3G15640 Aethionema arabicum HOM05D003951 ORTHO05D005378 0.0e+00 1226.1 983 63.0
Lj8A588G18 Lonicera japonica HOM05D003951 ORTHO05D005378 0.0e+00 1223.8 967 63.6
A02p01070 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1221.1 985 62.7
Os05g0230600 Oryza sativa ssp. japonica HOM05D003951 ORTHO05D005378 0.0e+00 1219.1 983 60.8
Nitab4.5_0004281g0080 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1199.5 897 65.4
Ah.10g035090 Amaranthus hybridus HOM05D003951 ORTHO05D005378 0.0e+00 1198.3 847 69.8
Zm00001eb350390 Zea mays HOM05D003951 ORTHO05D005378 0.0e+00 1188.3 975 60.4
Zm00001eb284300 Zea mays HOM05D003951 ORTHO05D005378 0.0e+00 1182.5 975 60.5
Medtr3g110090 Medicago truncatula HOM05D003951 ORTHO05D005378 0.0e+00 1159.8 844 66.6
CDE02G1137 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 0.0e+00 1112.8 952 58.6
SGA_v2.0_scaffold40G15445 Striga asiatica HOM05D003951 ORTHO05D005378 0.0e+00 1082.8 882 61.0
SHI18663 Sapria himalayana HOM05D003951 ORTHO05D005378 1.1e-304 1050.0 807 63.4
Mapoly0001s0045 Marchantia polymorpha HOM05D003951 ORTHO05D005378 6.4e-292 1007.7 988 53.3
Pp3c24_6940 Physcomitrium patens HOM05D003951 ORTHO05D005378 5.2e-286 988.0 987 50.7
Ah.16g105540 Amaranthus hybridus HOM05D003951 ORTHO05D005378 5.8e-269 931.4 690 66.1
Haze_16526 Corylus avellana HOM05D003951 ORTHO05D005378 3.1e-254 882.5 659 66.2
SMO361G0709 Selaginella moellendorffii HOM05D003951 ORTHO05D005378 4.2e-251 872.1 951 48.8
Actinidia14667 Actinidia chinensis HOM05D003951 ORTHO05D005378 1.6e-247 860.1 540 76.3
Lj7A704G78 Lonicera japonica HOM05D003951 ORTHO05D005378 6.5e-220 768.5 658 60.0
Ah.16g105530 Amaranthus hybridus HOM05D003951 ORTHO05D005378 2.9e-212 743.0 529 71.8
AagrBONN_evm.TU.Sc2ySwM_228.1359 Anthoceros agrestis HOM05D003951 ORTHO05D005378 7.5e-208 728.4 880 43.5
Actinidia15735 Actinidia chinensis HOM05D003951 ORTHO05D005378 7.8e-189 665.2 808 47.6
TAR626G1339 Trochodendron aralioides HOM05D003951 ORTHO05D005378 1.6e-173 614.4 377 78.2
Actinidia14668 Actinidia chinensis HOM05D003951 ORTHO05D005378 6.2e-154 549.3 420 65.5
HPP92_003925 Vanilla planifolia HOM05D003951 ORTHO05D005378 5.3e-153 546.2 913 38.4
Haze_16527 Corylus avellana HOM05D003951 ORTHO05D005378 6.9e-145 519.2 295 87.1
Lj7C704T11 Lonicera japonica HOM05D003951 ORTHO05D005378 2.3e-140 504.2 295 83.4
Gohir.A08G250566 Gossypium hirsutum HOM05D003951 ORTHO05D005378 2.9e-135 487.3 281 84.0
CBR_g46228 Chara braunii HOM05D000019 ORTHO05D000048 8.2e-130 469.2 837 36.7
PRCOL_00001466 Prasinoderma coloniale HOM05D003951 ORTHO05D005378 1.1e-121 442.2 1057 31.5
Cre01.g042550 Chlamydomonas reinhardtii HOM05D003951 ORTHO05D005378 2.1e-109 401.4 1017 32.4
TAR626G0188 Trochodendron aralioides HOM05D003951 ORTHO05D005378 6.7e-108 396.4 256 74.2
TAR626G1232 Trochodendron aralioides HOM05D003951 ORTHO05D005378 4.4e-107 393.7 324 61.1
vmacro07087 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 2.7e-101 374.4 663 39.5
unitig_22.g5110 Utricularia gibba HOM05D003951 ORTHO05D020105 9.5e-86 322.8 380 45.3
Hma1.2p1_1163F.1_g262790 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 3.9e-79 300.8 319 48.6
MCO05G363 Micromonas commoda HOM05D003951 ORTHO05D005378 6.6e-79 300.1 427 40.7
Actinidia13321 Actinidia chinensis HOM05D003951 ORTHO05D005378 3.1e-76 291.2 256 55.9
Psat2g043440 Pisum sativum HOM05D003951 ORTHO05D005378 3.9e-71 274.2 359 42.6
Nn3g18131 Nelumbo nucifera HOM05D003951 ORTHO05D005378 9.9e-59 233.0 147 82.3
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 7.1e-57 226.9 276 44.2
CBR_g46226 Chara braunii HOM05D003951 ORTHO05D005378 1.5e-54 219.2 183 60.1
BcaB01g05473 Brassica carinata HOM05D003951 ORTHO05D005378 9.0e-52 209.9 128 78.9
C03p05840 Brassica napus HOM05D003951 ORTHO05D005378 9.9e-51 206.5 124 80.6
Actinidia31233 Actinidia chinensis HOM05D006865 ORTHO05D009005 3.0e-47 194.9 141 66.0
BolC3t13096H Brassica oleracea HOM05D003951 ORTHO05D005378 1.3e-45 189.5 124 76.6
DCAR_004486 Daucus carota HOM05D003951 ORTHO05D035008 2.6e-43 181.8 105 81.9
Peaxi162Scf00110g00822 Petunia axillaris HOM05D003951 ORTHO05D005378 9.3e-41 173.3 200 53.5
BolC3t13097H Brassica oleracea HOM05D003951 ORTHO05D020105 2.1e-40 172.2 104 79.8
BcaB01g05472 Brassica carinata HOM05D003951 ORTHO05D020105 4.6e-40 171.0 104 79.8
C03p05850 Brassica napus HOM05D003951 ORTHO05D020105 4.6e-40 171.0 104 79.8
Cfa023291 Carpinus fangiana HOM05D003951 ORTHO05D005378 2.3e-39 168.7 1025 22.1
Hma1.2p1_1163F.1_g262780 Hydrangea macrophylla HOM05D003951 ORTHO05D033496 5.7e-30 137.5 84 83.3
TAR629G0021 Trochodendron aralioides HOM05D003951 ORTHO05D000285 6.3e-21 107.5 165 40.0
CiPaw.07G205500 Carya illinoinensis HOM05D003951 ORTHO05D020105 8.2e-21 107.1 70 75.7
A03p05100 Brassica napus HOM05D003951 ORTHO05D033496 1.4e-20 106.3 121 55.4
BraA03t09844Z Brassica rapa HOM05D003951 ORTHO05D033496 1.4e-20 106.3 121 55.4
CiPaw.07G205600 Carya illinoinensis HOM05D003951 ORTHO05D005378 1.4e-20 106.3 82 59.8
EL10Ac6g13930 Beta vulgaris HOM05D001881 ORTHO05D001856 4.1e-20 104.8 62 82.3
Dinv34398 Davidia involucrata HOM05D003951 ORTHO05D005378 5.3e-20 104.4 63 77.8
Ah.04g155890 Amaranthus hybridus HOM05D003518 ORTHO05D031015 1.0e-18 100.1 60 81.7
Nn3g18130 Nelumbo nucifera HOM05D003951 ORTHO05D020105 3.8e-18 98.2 72 70.8
Peaxi162Scf00110g00821 Petunia axillaris HOM05D003951 ORTHO05D035008 3.2e-17 95.1 82 53.7
Ah.05g173020 Amaranthus hybridus HOM05D003951 ORTHO05D031015 9.4e-17 93.6 60 76.7
Ah.05g172920 Amaranthus hybridus HOM05D003951 ORTHO05D031015 2.1e-16 92.4 60 76.7
SHI18664 Sapria himalayana HOM05D003951 ORTHO05D020105 2.0e-14 85.9 140 37.9
CAN.G541.23 Capsicum annuum HOM05D004796 ORTHO05D006527 2.5e-14 85.5 53 71.7
Peaxi162Scf00110g00823 Petunia axillaris HOM05D003951 ORTHO05D305850 2.8e-13 82.0 120 39.2
Psat6g121680 Pisum sativum HOM05D000840 ORTHO05D000670 1.4e-12 79.7 45 73.3
Ah.04g157730 Amaranthus hybridus HOM05D031501 ORTHO05D060762 6.7e-07 60.8 37 75.7


User provided reference genes

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