Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc23g0004690 Simmondsia chinensis HOM05D002037 ORTHO05D005586 6.3e-45 183.7 93 100.0
Sc23g0004800 Simmondsia chinensis HOM05D002037 ORTHO05D005586 4.6e-11 71.2 53 75.5
Sc23g0004440 Simmondsia chinensis HOM05D002037 ORTHO05D005586 3.9e-10 68.2 61 63.9
ECA248G2210 Erigeron canadensis HOM05D002037 ORTHO05D005586 1.1e-09 66.6 85 50.6
AUR62004328 Chenopodium quinoa HOM05D002037 ORTHO05D005586 1.5e-09 66.2 53 71.7
AUR62033316 Chenopodium quinoa HOM05D002037 ORTHO05D005586 1.5e-09 66.2 53 71.7
AUR62033343 Chenopodium quinoa HOM05D002037 ORTHO05D005586 1.5e-09 66.2 53 71.7
Aqoxy5G02379 Aquilegia oxysepala HOM05D002037 ORTHO05D005586 1.9e-09 65.9 53 67.9
Actinidia14156 Actinidia chinensis HOM05D002037 ORTHO05D005586 5.6e-09 64.3 53 67.9
ECA234G1135 Erigeron canadensis HOM05D002037 ORTHO05D005586 7.3e-09 63.9 53 66.0
Lsat_1_v5_gn_5_164581 Lactuca sativa HOM05D002037 ORTHO05D005586 7.3e-09 63.9 53 66.0
MSTRG.2681 Avicennia marina HOM05D002037 ORTHO05D005586 9.6e-09 63.5 53 67.9
BcaC02g09949 Brassica carinata HOM05D002037 ORTHO05D005586 9.6e-09 63.5 53 67.9
C04p34850 Brassica napus HOM05D002037 ORTHO05D005586 9.6e-09 63.5 53 67.9
BolC4t25037H Brassica oleracea HOM05D002037 ORTHO05D005586 9.6e-09 63.5 53 67.9
MD08G1134500 Malus domestica HOM05D002037 ORTHO05D005586 9.6e-09 63.5 54 66.7
GSVIVG01035586001 Vitis vinifera HOM05D002037 ORTHO05D005586 9.6e-09 63.5 53 66.0
Cpa.g.sc6.178 Carica papaya HOM05D002037 ORTHO05D005586 1.3e-08 63.2 53 66.0
BcaC07g40367 Brassica carinata HOM05D002037 ORTHO05D005586 1.6e-08 62.8 61 60.7
BcaC07g40389 Brassica carinata HOM05D002037 ORTHO05D005586 1.6e-08 62.8 61 60.7
C08p33110 Brassica napus HOM05D002037 ORTHO05D005586 1.6e-08 62.8 61 60.7
BolC8t50911H Brassica oleracea HOM05D002037 ORTHO05D005586 1.6e-08 62.8 61 60.7
CSS0019677 Camellia sinensis var. sinensis HOM05D002037 ORTHO05D005586 1.6e-08 62.8 53 66.0
Lj1g0005088 Lotus japonicus HOM05D002037 ORTHO05D005586 1.6e-08 62.8 53 64.2
Lalb_Chr23g0268941 Lupinus albus HOM05D002037 ORTHO05D005586 1.6e-08 62.8 53 66.0
Nitab4.5_0000320g0090 Nicotiana tabacum HOM05D002037 ORTHO05D005586 1.6e-08 62.8 85 47.1
Nitab4.5_0006112g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005586 1.6e-08 62.8 85 47.1
Peaxi162Scf00178g00004 Petunia axillaris HOM05D002037 ORTHO05D005586 1.6e-08 62.8 85 47.1
Peaxi162Scf00896g00012 Petunia axillaris HOM05D002037 ORTHO05D005586 1.6e-08 62.8 85 47.1
Prupe.1G463900 Prunus persica HOM05D002037 ORTHO05D005586 1.6e-08 62.8 53 67.9
A04p03050 Brassica napus HOM05D002037 ORTHO05D005586 2.1e-08 62.4 53 66.0
BraA04t16028Z Brassica rapa HOM05D002037 ORTHO05D005586 2.1e-08 62.4 53 66.0
HanXRQChr10g0278011 Helianthus annuus HOM05D002037 ORTHO05D005586 2.1e-08 62.4 53 66.0
Hma1.2p1_2176F.1_g316120 Hydrangea macrophylla HOM05D002037 ORTHO05D005586 2.1e-08 62.4 53 66.0
Phvul.009G099600 Phaseolus vulgaris HOM05D002037 ORTHO05D005586 2.1e-08 62.4 53 64.2
Solyc11g005620.1 Solanum lycopersicum HOM05D002037 ORTHO05D005586 2.1e-08 62.4 85 45.9
Sopen11g001580 Solanum pennellii HOM05D002037 ORTHO05D005586 2.1e-08 62.4 85 45.9
VMungo1309G2917 Vigna mungo HOM05D002037 ORTHO05D005261 2.1e-08 62.4 53 64.2
Glyma.04G073800 Glycine max HOM05D002037 ORTHO05D005586 2.8e-08 62.0 53 62.3
Os02g0657600 Oryza sativa ssp. japonica HOM05D002037 ORTHO05D005586 2.8e-08 62.0 61 60.7
A09p50430 Brassica napus HOM05D002037 ORTHO05D005586 3.6e-08 61.6 61 59.0
BraA09t40494Z Brassica rapa HOM05D002037 ORTHO05D005586 3.6e-08 61.6 61 59.0
FvH4_2g30500 Fragaria vesca HOM05D002037 ORTHO05D005586 3.6e-08 61.6 53 64.2
FAN24G2569 Fragaria x ananassa HOM05D002037 ORTHO05D005586 3.6e-08 61.6 53 64.2
FAN27G1718 Fragaria x ananassa HOM05D002037 ORTHO05D005586 3.6e-08 61.6 53 64.2
Manes.07G077700 Manihot esculenta HOM05D002037 ORTHO05D005586 3.6e-08 61.6 53 66.0
Manes.10G056500 Manihot esculenta HOM05D002037 ORTHO05D005586 3.6e-08 61.6 53 66.0
SalBow6G1621 Salvia bowleyana HOM05D002037 ORTHO05D005586 3.6e-08 61.6 53 62.3
SalBow6G6581 Salvia bowleyana HOM05D001849 ORTHO05D004075 3.6e-08 61.6 53 62.3
vmacro20743 Vaccinium macrocarpon HOM05D002037 ORTHO05D005586 3.6e-08 61.6 53 64.2
Ah.05g177530 Amaranthus hybridus HOM05D002037 ORTHO05D005586 4.8e-08 61.2 53 66.0
CANSAT25G2792 Cannabis sativa HOM05D002037 ORTHO05D005586 4.8e-08 61.2 53 66.0
Carub.0005s2440 Capsella rubella HOM05D002037 ORTHO05D005586 4.8e-08 61.2 53 64.2
Hma1.2p1_1382F.1_g279370 Hydrangea macrophylla HOM05D002037 ORTHO05D005586 4.8e-08 61.2 53 64.2
Lj8A3T12 Lonicera japonica HOM05D002037 ORTHO05D005586 4.8e-08 61.2 51 68.6
QL12p030933 Quercus lobata HOM05D002037 ORTHO05D005586 4.8e-08 61.2 53 64.2
SHI12423 Sapria himalayana HOM05D002037 ORTHO05D005586 4.8e-08 61.2 53 64.2
Sc23g0004780 Simmondsia chinensis HOM05D002037 ORTHO05D005586 4.8e-08 61.2 61 60.7
Atru.chr7.2707 Acer truncatum HOM05D002037 ORTHO05D005586 6.2e-08 60.8 48 72.9
Actinidia03569 Actinidia chinensis HOM05D002037 ORTHO05D005586 6.2e-08 60.8 48 72.9
BcaB02g08309 Brassica carinata HOM05D002037 ORTHO05D005586 6.2e-08 60.8 53 66.0
Haze_05098 Corylus avellana HOM05D002037 ORTHO05D005586 6.2e-08 60.8 53 62.3
Thhalv10006042m.g Eutrema salsugineum HOM05D002037 ORTHO05D005586 6.2e-08 60.8 61 59.0
Hma1.2p1_0319F.1_g123860 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 6.2e-08 60.8 53 64.2
Medtr3g108460 Medicago truncatula HOM05D002037 ORTHO05D005586 6.2e-08 60.8 53 64.2
Oeu048127.1 Olea europaea HOM05D002037 ORTHO05D005586 6.2e-08 60.8 53 64.2
Sp5g05030 Schrenkiella parvula HOM05D002037 ORTHO05D005586 6.2e-08 60.8 61 59.0
TAR636G3119 Trochodendron aralioides HOM05D002037 ORTHO05D005586 6.2e-08 60.8 53 64.2
Ah.05g177540 Amaranthus hybridus HOM05D002037 ORTHO05D005586 8.1e-08 60.5 53 66.0
CARHR167790 Cardamine hirsuta HOM05D002037 ORTHO05D005586 8.1e-08 60.5 53 64.2
Cfa013231 Carpinus fangiana HOM05D002037 ORTHO05D005586 8.1e-08 60.5 53 62.3
Dinv09453 Davidia involucrata HOM05D002037 ORTHO05D005586 8.1e-08 60.5 53 66.0
Nn1g00932 Nelumbo nucifera HOM05D002037 ORTHO05D005586 8.1e-08 60.5 53 64.2
Rhsim07G0172400 Rhododendron simsii HOM05D002037 ORTHO05D005586 8.1e-08 60.5 53 66.0
Rhsim07G0173100 Rhododendron simsii HOM05D002037 ORTHO05D005586 8.1e-08 60.5 53 66.0
RhsimUnG0016600 Rhododendron simsii HOM05D002037 ORTHO05D005586 8.1e-08 60.5 53 66.0
Sed0016385 Sechium edule HOM05D002037 ORTHO05D005586 8.1e-08 60.5 48 70.8
MSTRG.23424 Avicennia marina HOM05D002037 ORTHO05D005586 1.1e-07 60.1 53 66.0
Rhsim01G0105900 Rhododendron simsii HOM05D002037 ORTHO05D005586 1.1e-07 60.1 53 64.2
Sed0022277 Sechium edule HOM05D002037 ORTHO05D005586 1.1e-07 60.1 61 57.4
PGSC0003DMG400003981 Solanum tuberosum HOM05D002037 ORTHO05D005586 1.1e-07 60.1 85 44.7
unitig_8.g3509 Utricularia gibba HOM05D002037 ORTHO05D005586 1.1e-07 60.1 53 64.2
Aa31sc1187G30 Aethionema arabicum HOM05D002037 ORTHO05D005586 1.4e-07 59.7 53 64.2
Aa31sc992G40 Aethionema arabicum HOM05D002037 ORTHO05D005586 1.4e-07 59.7 53 64.2
CiPaw.07G216400 Carya illinoinensis HOM05D002037 ORTHO05D005586 1.4e-07 59.7 61 57.4
Ca_15684_v3 Cicer arietinum L. HOM05D002037 ORTHO05D005261 1.4e-07 59.7 53 64.2
Oeu019002.1 Olea europaea HOM05D002037 ORTHO05D005586 1.4e-07 59.7 53 66.0
Psat5g026120 Pisum sativum HOM05D002037 ORTHO05D005586 1.4e-07 59.7 53 62.3
Sc23g0004670 Simmondsia chinensis HOM05D002037 ORTHO05D005586 1.4e-07 59.7 61 62.3
TPR.G12308 Trifolium pratense HOM05D002037 ORTHO05D005586 1.4e-07 59.7 61 57.4
CAN.G135.28 Capsicum annuum HOM05D002037 ORTHO05D005586 1.8e-07 59.3 53 62.3
Ciclev10008739m.g Citrus clementina HOM05D002037 ORTHO05D005586 1.8e-07 59.3 53 66.0
Glyma.06G074900 Glycine max HOM05D002037 ORTHO05D005586 1.8e-07 59.3 53 60.4
ClCG08G012830 Citrullus lanatus HOM05D002037 ORTHO05D005586 2.4e-07 58.9 48 68.8
MELO3C011208.2 Cucumis melo HOM05D002037 ORTHO05D005586 2.4e-07 58.9 48 68.8
CsaV3_2G031570 Cucumis sativus L. HOM05D002037 ORTHO05D005586 2.4e-07 58.9 48 68.8
Potri.006G280100 Populus trichocarpa HOM05D002037 ORTHO05D005586 2.4e-07 58.9 53 64.2
Potri.018G001600 Populus trichocarpa HOM05D002037 ORTHO05D005586 2.4e-07 58.9 53 64.2
RcHm_v2.0_Chr6g0312541 Rosa chinensis HOM05D002037 ORTHO05D005586 2.4e-07 58.9 53 62.3
Sabra18G0005300 Salix brachista HOM05D002037 ORTHO05D002762 2.4e-07 58.9 53 64.2
AL5G39140 Arabidopsis lyrata HOM05D002037 ORTHO05D005586 3.1e-07 58.5 53 62.3
AT3G57560 Arabidopsis thaliana HOM05D002037 ORTHO05D005586 3.1e-07 58.5 53 62.3
Cc07_g17450 Coffea canephora HOM05D002037 ORTHO05D005586 3.1e-07 58.5 53 58.5
Haze_21661 Corylus avellana HOM05D002037 ORTHO05D005586 3.1e-07 58.5 53 60.4
Migut.H01099 Erythranthe guttata HOM05D002037 ORTHO05D005586 3.1e-07 58.5 53 64.2
FAN20G1771 Fragaria x ananassa HOM05D002037 ORTHO05D005586 3.1e-07 58.5 53 62.3
PSO063G5534 Papaver somniferum HOM05D002037 ORTHO05D005586 3.1e-07 58.5 48 68.8
DCAR_020609 Daucus carota HOM05D002037 ORTHO05D005586 5.3e-07 57.8 53 62.3
THA.LOC104802261 Tarenaya hassleriana HOM05D002037 ORTHO05D005586 5.3e-07 57.8 48 68.8
HPP92_022465 Vanilla planifolia HOM05D002037 ORTHO05D005586 6.9e-07 57.4 61 52.5
Os04g0550500 Oryza sativa ssp. japonica HOM05D002037 ORTHO05D005586 9.0e-07 57.0 48 64.6
Hund19379 Selenicereus undatus HOM05D002037 ORTHO05D005586 9.0e-07 57.0 85 45.9
TWI14G0248 Tripterygium wilfordii HOM05D002037 ORTHO05D005586 9.0e-07 57.0 48 68.8
Zm00001eb074610 Zea mays HOM05D002037 ORTHO05D005586 9.0e-07 57.0 48 64.6
SGA_v2.0_scaffold231G43409 Striga asiatica HOM05D002037 ORTHO05D005586 1.2e-06 56.6 53 62.3
CBR_g84854 Chara braunii HOM05D002037 ORTHO05D005586 1.5e-06 56.2 65 49.2
Gohir.A13G118600 Gossypium hirsutum HOM05D002037 ORTHO05D005586 1.5e-06 56.2 61 54.1
Gohir.D13G122400 Gossypium hirsutum HOM05D002037 ORTHO05D005586 1.5e-06 56.2 61 54.1
Gorai.013G137200 Gossypium raimondii HOM05D002037 ORTHO05D005586 1.5e-06 56.2 61 54.1
Cre01.g015000 Chlamydomonas reinhardtii HOM05D002037 ORTHO05D005586 2.0e-06 55.8 61 47.5
Eucgr.C02143 Eucalyptus grandis HOM05D002037 ORTHO05D005586 2.0e-06 55.8 48 66.7
Duzib116G0244 Durio zibethinus HOM05D002037 ORTHO05D005586 2.6e-06 55.5 46 69.6
Duzib177G0635 Durio zibethinus HOM05D002037 ORTHO05D005586 2.6e-06 55.5 53 60.4
Migut.F01615 Erythranthe guttata HOM05D002037 ORTHO05D005586 3.4e-06 55.1 53 58.5
Zm00001eb186530 Zea mays HOM05D002037 ORTHO05D005586 3.4e-06 55.1 48 62.5
ATR0782G017 Amborella trichopoda HOM05D002037 ORTHO05D005586 5.8e-06 54.3 49 57.1
COL.COLO4_15466 Corchorus olitorius HOM05D002037 ORTHO05D005586 7.6e-06 53.9 61 54.1
SEGI_19958 Sequoiadendron giganteum HOM05D002037 ORTHO05D005586 7.6e-06 53.9 53 56.6
SEGI_35978 Sequoiadendron giganteum HOM05D002037 ORTHO05D005586 7.6e-06 53.9 53 56.6
Thecc.08G172900 Theobroma cacao HOM05D002037 ORTHO05D005586 7.6e-06 53.9 48 64.6
PGR102G0041 Punica granatum HOM05D002037 ORTHO05D005586 9.9e-06 53.5 59 54.2


User provided reference genes

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