Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc23g0004630 Simmondsia chinensis HOM05D003553 ORTHO05D005072 1.6e-123 446.0 215 100.0
Sc23g0004450 Simmondsia chinensis HOM05D003553 ORTHO05D005072 7.4e-97 357.5 219 80.8
Hund26920 Selenicereus undatus HOM05D003553 ORTHO05D005072 5.5e-68 261.5 220 59.5
AUR62014518 Chenopodium quinoa HOM05D003553 ORTHO05D005072 3.0e-66 255.8 209 62.2
EL10Ac1g00671 Beta vulgaris HOM05D003553 ORTHO05D005072 2.8e-64 249.2 211 60.2
Dinv19921 Davidia involucrata HOM05D003553 ORTHO05D005072 7.0e-63 244.6 207 60.9
Cfa018984 Carpinus fangiana HOM05D003553 ORTHO05D005072 9.2e-63 244.2 215 57.2
QL10p015682 Quercus lobata HOM05D003553 ORTHO05D005072 1.6e-62 243.4 210 58.6
Thecc.03G080100 Theobroma cacao HOM05D003553 ORTHO05D005072 1.3e-61 240.4 220 56.8
Actinidia19057 Actinidia chinensis HOM05D003553 ORTHO05D005072 3.8e-61 238.8 212 59.0
Ah.08g217620 Amaranthus hybridus HOM05D003553 ORTHO05D005072 3.8e-61 238.8 220 55.5
Haze_07373 Corylus avellana HOM05D003553 ORTHO05D005072 3.8e-61 238.8 217 57.1
Manes.14G075200 Manihot esculenta HOM05D003553 ORTHO05D005072 3.8e-61 238.8 220 57.7
TAR622G0519 Trochodendron aralioides HOM05D003553 ORTHO05D005072 1.5e-60 236.9 208 58.7
COL.COLO4_05913 Corchorus olitorius HOM05D003553 ORTHO05D005072 2.5e-60 236.1 211 56.9
Nn3g17139 Nelumbo nucifera HOM05D003553 ORTHO05D005072 9.5e-60 234.2 208 58.2
GSVIVG01008052001 Vitis vinifera HOM05D003553 ORTHO05D005072 2.1e-59 233.0 208 57.2
Cpa.g.sc17.207 Carica papaya HOM05D003553 ORTHO05D005072 2.8e-59 232.6 221 54.8
Duzib084G0749 Durio zibethinus HOM05D003553 ORTHO05D005072 4.7e-59 231.9 218 55.5
Atru.chr9.2308 Acer truncatum HOM05D003553 ORTHO05D005072 1.0e-58 230.7 213 56.3
Rhsim08G0159300 Rhododendron simsii HOM05D003553 ORTHO05D005072 1.0e-58 230.7 218 56.0
FvH4_5g15420 Fragaria vesca HOM05D003553 ORTHO05D005072 2.3e-58 229.6 218 56.0
RcHm_v2.0_Chr7g0180661 Rosa chinensis HOM05D003553 ORTHO05D005072 2.3e-58 229.6 196 59.2
Ciclev10024236m.g Citrus clementina HOM05D003553 ORTHO05D005072 4.0e-58 228.8 220 54.5
Potri.012G070000 Populus trichocarpa HOM05D003553 ORTHO05D005072 6.8e-58 228.0 218 55.0
Gohir.A12G175340 Gossypium hirsutum HOM05D003553 ORTHO05D005072 1.2e-57 227.3 220 55.5
Gohir.D12G178408 Gossypium hirsutum HOM05D003553 ORTHO05D005072 1.2e-57 227.3 220 55.5
Eucgr.B00433 Eucalyptus grandis HOM05D003553 ORTHO05D005072 1.5e-57 226.9 199 57.8
ECA247G0496 Erigeron canadensis HOM05D003553 ORTHO05D005072 2.0e-57 226.5 198 60.1
Solyc06g071030.3 Solanum lycopersicum HOM05D003553 ORTHO05D005072 2.6e-57 226.1 196 57.1
Prupe.5G187000 Prunus persica HOM05D003553 ORTHO05D005072 5.7e-57 224.9 219 53.9
FAN18G1891 Fragaria x ananassa HOM05D003553 ORTHO05D005072 7.5e-57 224.6 226 54.4
Lj9A460T56 Lonicera japonica HOM05D003553 ORTHO05D005072 7.5e-57 224.6 210 55.7
Sopen06g027330 Solanum pennellii HOM05D003553 ORTHO05D005072 7.5e-57 224.6 196 56.6
DCAR_032137 Daucus carota HOM05D003553 ORTHO05D005072 1.7e-56 223.4 198 58.1
Gorai.009G355100 Gossypium raimondii HOM05D003553 ORTHO05D005072 1.7e-56 223.4 220 55.9
vmacro17511 Vaccinium macrocarpon HOM05D003553 ORTHO05D005072 1.7e-56 223.4 218 52.8
FAN08G3028 Fragaria x ananassa HOM05D006304 ORTHO05D008584 3.7e-56 222.2 218 55.5
FAN04G3159 Fragaria x ananassa HOM05D006304 ORTHO05D008584 4.9e-56 221.9 218 55.0
Gohir.D05G331200 Gossypium hirsutum HOM05D003553 ORTHO05D005072 4.9e-56 221.9 220 55.5
Gorai.008G190900 Gossypium raimondii HOM05D003553 ORTHO05D005072 4.9e-56 221.9 220 55.0
MD06G1188700 Malus domestica HOM05D003553 ORTHO05D005072 4.9e-56 221.9 211 55.5
Peaxi162Scf00013g00033 Petunia axillaris HOM05D003553 ORTHO05D005072 6.4e-56 221.5 220 50.9
Gohir.A04G049100 Gossypium hirsutum HOM05D003553 ORTHO05D005072 8.3e-56 221.1 219 54.8
Lsat_1_v5_gn_3_22001 Lactuca sativa HOM05D003553 ORTHO05D005072 1.8e-55 219.9 198 58.6
PGSC0003DMG400033038 Solanum tuberosum HOM05D003553 ORTHO05D005072 2.4e-55 219.5 196 55.6
HanXRQChr14g0461161 Helianthus annuus HOM05D003553 ORTHO05D005072 7.0e-55 218.0 196 58.2
CAN.G628.39 Capsicum annuum HOM05D003553 ORTHO05D005072 1.6e-54 216.9 196 54.1
Nitab4.5_0000269g0200 Nicotiana tabacum HOM05D003553 ORTHO05D005072 1.6e-54 216.9 215 50.7
Nitab4.5_0009895g0030 Nicotiana tabacum HOM05D003553 ORTHO05D005072 7.8e-54 214.5 208 51.0
Oeu006476.1 Olea europaea HOM05D003553 ORTHO05D005072 6.6e-53 211.5 208 51.4
CiPaw.12G016200 Carya illinoinensis HOM05D003553 ORTHO05D005072 1.5e-52 210.3 209 53.6
FAN13G0685 Fragaria x ananassa HOM05D006304 ORTHO05D008584 1.6e-51 206.8 210 54.3
Aqoxy3G03280 Aquilegia oxysepala HOM05D003553 ORTHO05D005072 6.2e-51 204.9 211 54.5
CsaV3_1G002150 Cucumis sativus L. HOM05D003553 ORTHO05D005072 6.2e-51 204.9 206 51.5
Glyma.03G070600 Glycine max HOM05D003553 ORTHO05D005072 4.0e-50 202.2 197 54.8
Lalb_Chr07g0192981 Lupinus albus HOM05D003553 ORTHO05D005072 4.0e-50 202.2 198 55.1
MBI11_g14660_MAGBIO Magnolia biondii HOM05D003553 ORTHO05D005072 1.2e-49 200.7 197 53.8
SGA_v2.0_scaffold25G10906 Striga asiatica HOM05D003553 ORTHO05D005072 1.5e-49 200.3 218 50.9
Phvul.010G011700 Phaseolus vulgaris HOM05D003553 ORTHO05D005072 4.4e-49 198.7 198 53.0
Glyma.01G104100 Glycine max HOM05D003553 ORTHO05D005072 7.5e-49 198.0 197 54.3
SalBow5G1335 Salvia bowleyana HOM05D003553 ORTHO05D005072 7.5e-49 198.0 210 51.4
arahy.Tifrunner.gnm1.ann1.D3VYYS Arachis hypogaea HOM05D003553 ORTHO05D005072 9.8e-49 197.6 200 52.5
arahy.Tifrunner.gnm1.ann1.PUHY82 Arachis hypogaea HOM05D003553 ORTHO05D005072 1.7e-48 196.8 200 53.0
Migut.I00130 Erythranthe guttata HOM05D003553 ORTHO05D005072 2.9e-48 196.1 215 49.8
CDE06G2389 Ceratophyllum demersum HOM05D003553 ORTHO05D005072 4.9e-48 195.3 197 50.8
Sed0007559 Sechium edule HOM05D003553 ORTHO05D005072 4.9e-48 195.3 195 50.3
VMungo0331G1422 Vigna mungo HOM05D003553 ORTHO05D005072 8.3e-48 194.5 198 52.0
CARHR019520 Cardamine hirsuta HOM05D003553 ORTHO05D005072 1.1e-47 194.1 209 52.2
MELO3C017156.2 Cucumis melo HOM05D003553 ORTHO05D005072 1.1e-47 194.1 208 49.0
AT1G18870 Arabidopsis thaliana HOM05D003553 ORTHO05D005072 1.4e-47 193.7 214 50.9
CiPaw.11G039100 Carya illinoinensis HOM05D003553 ORTHO05D005072 1.4e-47 193.7 213 52.1
BcaC08g46898 Brassica carinata HOM05D003553 ORTHO05D005072 1.9e-47 193.4 214 50.5
Thhalv10018346m.g Eutrema salsugineum HOM05D003553 ORTHO05D005072 1.9e-47 193.4 209 52.2
Medtr4g076520 Medicago truncatula HOM05D003553 ORTHO05D005072 1.9e-47 193.4 198 52.5
Os09g0361500 Oryza sativa ssp. japonica HOM05D003553 ORTHO05D005072 1.9e-47 193.4 196 52.0
Sc23g0004760 Simmondsia chinensis HOM05D003553 ORTHO05D005072 2.4e-47 193.0 131 74.8
AT1G74710 Arabidopsis thaliana HOM05D003553 ORTHO05D005072 4.1e-47 192.2 197 53.3
CSS0033583 Camellia sinensis var. sinensis HOM05D003553 ORTHO05D005072 4.1e-47 192.2 176 56.8
Psat7g237240 Pisum sativum HOM05D003553 ORTHO05D005072 4.1e-47 192.2 200 51.5
Lj3g0022540 Lotus japonicus HOM05D003553 ORTHO05D005072 5.4e-47 191.8 208 51.9
Sp5g29830 Schrenkiella parvula HOM05D003553 ORTHO05D005072 5.4e-47 191.8 197 52.8
Carub.0001s1852 Capsella rubella HOM05D003553 ORTHO05D005072 7.0e-47 191.4 197 51.8
Carub.0002s2150 Capsella rubella HOM05D003553 ORTHO05D005072 9.2e-47 191.0 212 50.9
Cc04_g15460 Coffea canephora HOM05D003553 ORTHO05D005072 2.0e-46 189.9 198 50.0
CARHR068010 Cardamine hirsuta HOM05D003553 ORTHO05D005072 2.7e-46 189.5 214 50.0
C06p48750 Brassica napus HOM05D003553 ORTHO05D005072 4.6e-46 188.7 215 50.2
AL2G34600 Arabidopsis lyrata HOM05D003553 ORTHO05D005072 6.0e-46 188.3 216 50.5
BcaC03g15524 Brassica carinata HOM05D003553 ORTHO05D005072 6.0e-46 188.3 209 50.2
Thhalv10007243m.g Eutrema salsugineum HOM05D003553 ORTHO05D005072 6.0e-46 188.3 209 51.2
Sp1g16850 Schrenkiella parvula HOM05D003553 ORTHO05D005072 6.0e-46 188.3 209 51.2
THA.LOC104813869 Tarenaya hassleriana HOM05D003553 ORTHO05D005072 6.0e-46 188.3 211 49.8
unitig_750.g28498 Utricularia gibba HOM05D003553 ORTHO05D005072 7.8e-46 188.0 245 44.1
BcaB03g12949 Brassica carinata HOM05D003553 ORTHO05D005072 1.7e-45 186.8 207 50.2
MSTRG.11397 Avicennia marina HOM05D003553 ORTHO05D005072 3.0e-45 186.0 220 47.3
BcaB05g24870 Brassica carinata HOM05D003553 ORTHO05D005072 3.0e-45 186.0 210 50.5
BolC6t39911H Brassica oleracea HOM05D003553 ORTHO05D005072 3.0e-45 186.0 215 49.3
A08p30110 Brassica napus HOM05D003553 ORTHO05D005072 3.9e-45 185.7 203 50.7
BraA02t06991Z Brassica rapa HOM05D003553 ORTHO05D005072 3.9e-45 185.7 210 50.5
BraA08t34946Z Brassica rapa HOM05D003553 ORTHO05D005072 3.9e-45 185.7 203 50.7
Aa31LG4G4940 Aethionema arabicum HOM05D003553 ORTHO05D005072 6.6e-45 184.9 197 51.3
C06p33160 Brassica napus HOM05D003553 ORTHO05D005072 6.6e-45 184.9 221 50.2
BolC6t38431H Brassica oleracea HOM05D003553 ORTHO05D005072 6.6e-45 184.9 221 50.2
HPP92_007667 Vanilla planifolia HOM05D003553 ORTHO05D005072 6.6e-45 184.9 210 48.1
Sabra12G0049900 Salix brachista HOM05D003553 ORTHO05D005072 8.6e-45 184.5 164 57.9
BcaB02g06963 Brassica carinata HOM05D003553 ORTHO05D005072 1.1e-44 184.1 211 48.8
BraA07t31582Z Brassica rapa HOM05D003553 ORTHO05D005072 1.1e-44 184.1 210 51.0
A02p19540 Brassica napus HOM05D003553 ORTHO05D005072 1.5e-44 183.7 210 50.0
C02p32080 Brassica napus HOM05D003553 ORTHO05D005072 1.5e-44 183.7 210 50.0
BolC2t09243H Brassica oleracea HOM05D003553 ORTHO05D005072 1.5e-44 183.7 210 50.0
ATR1120G170 Amborella trichopoda HOM05D003553 ORTHO05D005072 3.3e-44 182.6 198 48.5
Zm00001eb310840 Zea mays HOM05D003553 ORTHO05D005072 5.6e-44 181.8 209 48.3
A07p29260 Brassica napus HOM05D003553 ORTHO05D005072 7.3e-44 181.4 220 49.1
BraA07t30565Z Brassica rapa HOM05D003553 ORTHO05D005072 1.6e-43 180.3 220 48.6
BcaC07g38956 Brassica carinata HOM05D003553 ORTHO05D005072 2.1e-43 179.9 205 48.3
C08p19030 Brassica napus HOM05D003553 ORTHO05D005072 2.1e-43 179.9 205 48.3
BolC8t49526H Brassica oleracea HOM05D003553 ORTHO05D005072 2.1e-43 179.9 205 48.3
Aa31LG7G3710 Aethionema arabicum HOM05D003553 ORTHO05D005072 3.6e-43 179.1 198 49.5
MSTRG.23042 Avicennia marina HOM05D003553 ORTHO05D005072 6.2e-43 178.3 216 47.2
BcaB07g31908 Brassica carinata HOM05D003553 ORTHO05D005072 1.1e-42 177.6 208 47.6
A06p15100 Brassica napus HOM05D003553 ORTHO05D005072 6.8e-42 174.9 208 48.6
Oeu048740.1 Olea europaea HOM05D003553 ORTHO05D005072 1.5e-41 173.7 197 46.7
THA.LOC104812556 Tarenaya hassleriana HOM05D003553 ORTHO05D005072 1.5e-41 173.7 211 47.4
BcaC05g25790 Brassica carinata HOM05D003553 ORTHO05D005072 2.6e-41 172.9 209 47.4
BraA06t24624Z Brassica rapa HOM05D003553 ORTHO05D005072 3.4e-41 172.6 209 47.8
AUR62038016 Chenopodium quinoa HOM05D003553 ORTHO05D005072 2.5e-36 156.4 121 63.6
SEGI_02517 Sequoiadendron giganteum HOM05D003553 ORTHO05D005072 2.3e-34 149.8 213 43.7
ClCG06G016360 Citrullus lanatus HOM05D003553 ORTHO05D005072 3.1e-34 149.4 177 44.6
Migut.I00129 Erythranthe guttata HOM05D003553 ORTHO05D005072 2.9e-32 142.9 152 48.7
MD14G1195500 Malus domestica HOM05D003553 ORTHO05D005072 3.3e-28 129.4 136 52.9
Mapoly0195s0004 Marchantia polymorpha HOM05D003438 ORTHO05D004235 2.8e-27 126.3 209 36.4
SEGI_27806 Sequoiadendron giganteum HOM05D003553 ORTHO05D005072 5.2e-26 122.1 187 36.9
AagrBONN_evm.TU.Sc2ySwM_228.2269 Anthoceros agrestis HOM05D003438 ORTHO05D004235 8.9e-26 121.3 218 32.6
TPR.G24814 Trifolium pratense HOM05D003553 ORTHO05D005072 9.9e-25 117.9 127 48.0
arahy.Tifrunner.gnm1.ann1.9TI54L Arachis hypogaea HOM05D003553 ORTHO05D005072 1.4e-23 114.0 119 47.9
SMO270G0001 Selaginella moellendorffii HOM05D003553 ORTHO05D005072 3.2e-23 112.8 197 36.0
SEGI_10147 Sequoiadendron giganteum HOM05D003553 ORTHO05D005072 3.9e-21 105.9 159 36.5
BolC5t30429H Brassica oleracea HOM05D003553 ORTHO05D005072 1.9e-20 103.6 118 47.5
Pp3c9_10620 Physcomitrium patens HOM05D003438 ORTHO05D004235 5.6e-20 102.1 208 34.1
BcaC06g35156 Brassica carinata HOM05D003553 ORTHO05D005072 3.6e-19 99.4 187 36.4
BolC1t02585H Brassica oleracea HOM05D000745 ORTHO05D005072 6.2e-19 98.6 163 41.1
TPR.G5641 Trifolium pratense HOM05D003553 ORTHO05D005072 1.0e-13 81.3 69 58.0
TAR622G0030 Trochodendron aralioides HOM05D003553 ORTHO05D005072 3.0e-13 79.7 80 55.0
BcaNung05961 Brassica carinata HOM05D003553 ORTHO05D005072 1.1e-12 77.8 77 53.2
Aa31LG7G6930 Aethionema arabicum HOM05D003553 ORTHO05D005072 2.1e-11 73.6 77 51.9
TAR629G1044 Trochodendron aralioides HOM05D003438 ORTHO05D004235 1.8e-10 70.5 128 36.7
BcaB02g10729 Brassica carinata HOM05D003553 ORTHO05D016026 1.2e-09 67.8 81 44.4
A06p09090 Brassica napus HOM05D003553 ORTHO05D005072 5.8e-09 65.5 151 32.5
BcaC08g43295 Brassica carinata HOM05D003553 ORTHO05D005072 7.6e-09 65.1 127 33.9
BcaB05g24627 Brassica carinata HOM05D003553 ORTHO05D005072 1.1e-07 61.2 56 55.4
BcaB08g35674 Brassica carinata HOM05D003553 ORTHO05D005072 1.1e-07 61.2 56 55.4
TWI75G0189 Tripterygium wilfordii HOM05D003438 ORTHO05D004235 1.1e-07 61.2 101 34.7
C05p17290 Brassica napus HOM05D003553 ORTHO05D000856 4.2e-07 59.3 58 50.0
ATR0691G173 Amborella trichopoda HOM05D003438 ORTHO05D004235 5.5e-07 58.9 112 31.2
Dinv16579 Davidia involucrata HOM05D003438 ORTHO05D004235 9.3e-07 58.2 108 37.0
C07p19270 Brassica napus HOM05D003553 ORTHO05D016026 1.2e-06 57.8 82 41.5
BolC7t42440H Brassica oleracea HOM05D003553 ORTHO05D016026 1.2e-06 57.8 82 41.5
CARHR115670 Cardamine hirsuta HOM05D003553 ORTHO05D005072 1.6e-06 57.4 68 42.6
CBR_g47969 Chara braunii HOM05D003553 ORTHO05D005072 1.6e-06 57.4 98 34.7
Dinv38670 Davidia involucrata HOM05D003553 ORTHO05D185171 2.1e-06 57.0 33 72.7
Dinv16582 Davidia involucrata HOM05D003438 ORTHO05D004235 2.7e-06 56.6 108 36.1
CANSAT64G0670 Cannabis sativa HOM05D003438 ORTHO05D004235 3.5e-06 56.2 109 34.9
Nn4g23587 Nelumbo nucifera HOM05D003438 ORTHO05D004235 7.9e-06 55.1 105 37.1


User provided reference genes

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