Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc23g0004510 Simmondsia chinensis HOM05D003186 ORTHO05D003452 6.2e-94 347.4 173 100.0
AUR62023357 Chenopodium quinoa HOM05D003186 ORTHO05D003452 5.0e-19 98.6 227 39.2
EL10Ac1g00705 Beta vulgaris HOM05D003186 ORTHO05D003452 5.5e-18 95.1 276 33.7
Hund17130 Selenicereus undatus HOM05D003186 ORTHO05D003452 1.0e-16 90.9 245 35.1
Lj7C552T25 Lonicera japonica HOM05D003186 ORTHO05D003452 2.3e-16 89.7 226 35.8
Ah.05g177570 Amaranthus hybridus HOM05D003186 ORTHO05D003452 5.2e-16 88.6 270 31.5
Sc18g0003760 Simmondsia chinensis HOM05D003186 ORTHO05D003452 4.5e-12 75.5 138 39.9
TAR375G0380 Trochodendron aralioides HOM05D003186 ORTHO05D003452 7.7e-12 74.7 296 28.7
BcaC02g12291 Brassica carinata HOM05D003186 ORTHO05D003452 3.8e-11 72.4 278 29.9
C04p05560 Brassica napus HOM05D003186 ORTHO05D003452 3.8e-11 72.4 278 29.9
PGR004G1173 Punica granatum HOM05D003186 ORTHO05D003452 6.5e-11 71.6 247 30.8
BolC4t22186H Brassica oleracea HOM05D003186 ORTHO05D003452 1.1e-10 70.9 281 27.8
ECA236G2684 Erigeron canadensis HOM05D003186 ORTHO05D003452 1.9e-10 70.1 313 27.8
Hma1.2p1_0021F.1_g014275 Hydrangea macrophylla HOM05D003186 ORTHO05D003452 2.5e-10 69.7 305 28.2
Hma1.2p1_0021F.1_g014290 Hydrangea macrophylla HOM05D003186 ORTHO05D003452 2.5e-10 69.7 305 28.2
Ca_23143_v3 Cicer arietinum L. HOM05D003186 ORTHO05D003452 3.2e-10 69.3 279 29.4
Atru.chr5.38 Acer truncatum HOM05D003186 ORTHO05D003452 5.5e-10 68.6 328 29.6
A05p04750 Brassica napus HOM05D003186 ORTHO05D003452 5.5e-10 68.6 283 29.0
BraA05t19451Z Brassica rapa HOM05D003186 ORTHO05D003452 5.5e-10 68.6 279 29.7
BcaB06g29388 Brassica carinata HOM05D003186 ORTHO05D003452 7.2e-10 68.2 235 35.3
Lj9P549T18 Lonicera japonica HOM05D003186 ORTHO05D003452 7.2e-10 68.2 304 29.3
TAR374G0545 Trochodendron aralioides HOM05D003186 ORTHO05D003452 7.2e-10 68.2 282 29.4
Atru.chr5.68 Acer truncatum HOM05D003186 ORTHO05D003452 9.4e-10 67.8 330 29.4
arahy.Tifrunner.gnm1.ann1.U9U8W4 Arachis hypogaea HOM05D003186 ORTHO05D003452 1.2e-09 67.4 315 28.3
BcaB06g29389 Brassica carinata HOM05D003186 ORTHO05D003452 1.2e-09 67.4 234 33.8
A09p52480 Brassica napus HOM05D003186 ORTHO05D003452 1.6e-09 67.0 273 27.8
Ciclev10021280m.g Citrus clementina HOM05D003186 ORTHO05D003452 2.1e-09 66.6 95 46.3
BraA09t40678Z Brassica rapa HOM05D003186 ORTHO05D003452 2.7e-09 66.2 272 28.7
unitig_26.g8864 Utricularia gibba HOM05D003186 ORTHO05D003452 2.7e-09 66.2 221 31.2
BcaC07g40522 Brassica carinata HOM05D003186 ORTHO05D003452 3.6e-09 65.9 272 28.3
C08p35230 Brassica napus HOM05D003186 ORTHO05D003452 3.6e-09 65.9 272 28.3
BolC8t51117H Brassica oleracea HOM05D003186 ORTHO05D003452 3.6e-09 65.9 272 28.3
Actinidia05791 Actinidia chinensis HOM05D003186 ORTHO05D003452 4.7e-09 65.5 266 29.3
A07p25000 Brassica napus HOM05D003186 ORTHO05D003452 4.7e-09 65.5 246 30.9
TPR.G27403 Trifolium pratense HOM05D003186 ORTHO05D003452 6.1e-09 65.1 313 27.8
VMungo1383G2278 Vigna mungo HOM05D003186 ORTHO05D003452 6.1e-09 65.1 316 28.5
BraA07t30140Z Brassica rapa HOM05D003186 ORTHO05D003452 8.0e-09 64.7 246 26.8
BcaC08g45026 Brassica carinata HOM05D003186 ORTHO05D003452 1.0e-08 64.3 242 26.9
C06p26570 Brassica napus HOM05D003186 ORTHO05D003452 1.0e-08 64.3 242 26.9
BolC6t37821H Brassica oleracea HOM05D003186 ORTHO05D003452 1.0e-08 64.3 242 29.8
DCAR_025021 Daucus carota HOM05D003186 ORTHO05D003452 1.4e-08 63.9 290 29.0
Potri.014G043800 Populus trichocarpa HOM05D003186 ORTHO05D003452 1.4e-08 63.9 90 46.7
Dinv44017 Davidia involucrata HOM05D003186 ORTHO05D003452 1.8e-08 63.5 312 27.6
Eucgr.E01708 Eucalyptus grandis HOM05D003186 ORTHO05D003452 1.8e-08 63.5 80 46.2
BcaB02g07428 Brassica carinata HOM05D003186 ORTHO05D003452 2.3e-08 63.2 248 27.8
COL.COLO4_12347 Corchorus olitorius HOM05D003186 ORTHO05D003452 2.3e-08 63.2 312 27.9
Potri.002G135400 Populus trichocarpa HOM05D003186 ORTHO05D003452 2.3e-08 63.2 92 44.6
Sed0022506 Sechium edule HOM05D003186 ORTHO05D003452 2.3e-08 63.2 116 41.4
Dinv43584 Davidia involucrata HOM05D003186 ORTHO05D003452 3.0e-08 62.8 79 48.1
Gohir.D12G102500 Gossypium hirsutum HOM05D003186 ORTHO05D003452 3.0e-08 62.8 299 26.4
Phvul.008G051200 Phaseolus vulgaris HOM05D003186 ORTHO05D003452 3.0e-08 62.8 94 44.7
BcaC02g07102 Brassica carinata HOM05D003186 ORTHO05D003452 4.0e-08 62.4 249 32.5
Sabra02G0105200 Salix brachista HOM05D003186 ORTHO05D003452 4.0e-08 62.4 90 47.8
Thecc.01G403000 Theobroma cacao HOM05D003186 ORTHO05D003452 4.0e-08 62.4 313 27.2
C04p71110 Brassica napus HOM05D003186 ORTHO05D003452 5.2e-08 62.0 249 31.3
BolC4t28614H Brassica oleracea HOM05D003186 ORTHO05D003452 5.2e-08 62.0 249 31.3
Duzib268G0279 Durio zibethinus HOM05D003186 ORTHO05D003452 5.2e-08 62.0 310 27.1
Gorai.008G111700 Gossypium raimondii HOM05D003186 ORTHO05D003452 5.2e-08 62.0 299 26.4
Sed0018587 Sechium edule HOM05D003186 ORTHO05D003452 5.2e-08 62.0 124 44.4
Solyc01g088530.2 Solanum lycopersicum HOM05D003186 ORTHO05D003452 5.2e-08 62.0 312 27.9
ClCG06G000800 Citrullus lanatus HOM05D003186 ORTHO05D003452 6.8e-08 61.6 81 51.9
CsaV3_6G006600 Cucumis sativus L. HOM05D003186 ORTHO05D003452 6.8e-08 61.6 81 51.9
Glyma.09G247300 Glycine max HOM05D003186 ORTHO05D003452 6.8e-08 61.6 312 27.6
Psat4g219160 Pisum sativum HOM05D003186 ORTHO05D003452 6.8e-08 61.6 276 27.2
MELO3C022461.2 Cucumis melo HOM05D003186 ORTHO05D003452 8.8e-08 61.2 81 51.9
Sabra14G0031700 Salix brachista HOM05D003186 ORTHO05D003452 8.8e-08 61.2 92 42.4
Gohir.A12G099500 Gossypium hirsutum HOM05D003186 ORTHO05D003452 1.2e-07 60.8 299 26.4
MBI04_g03333_MAGBIO Magnolia biondii HOM05D003186 ORTHO05D003452 1.2e-07 60.8 261 26.8
CAN.G756.11 Capsicum annuum HOM05D003186 ORTHO05D003452 1.5e-07 60.5 79 44.3
AUR62013800 Chenopodium quinoa HOM05D003186 ORTHO05D003452 1.5e-07 60.5 191 33.5
Rhsim01G0144500 Rhododendron simsii HOM05D003186 ORTHO05D003452 1.5e-07 60.5 292 28.4
Gohir.D08G065200 Gossypium hirsutum HOM05D003186 ORTHO05D003452 2.0e-07 60.1 314 26.8
Gorai.004G067500 Gossypium raimondii HOM05D003186 ORTHO05D003452 2.0e-07 60.1 314 26.8
PGSC0003DMG400001684 Solanum tuberosum HOM05D003186 ORTHO05D003452 2.0e-07 60.1 316 27.8
THA.LOC104817174 Tarenaya hassleriana HOM05D003186 ORTHO05D003452 2.0e-07 60.1 303 26.7
Cc02_g25690 Coffea canephora HOM05D003186 ORTHO05D003452 2.6e-07 59.7 76 47.4
Migut.O00568 Erythranthe guttata HOM05D003186 ORTHO05D003452 2.6e-07 59.7 69 50.7
FAN03G3421 Fragaria x ananassa HOM05D003186 ORTHO05D003452 2.6e-07 59.7 103 43.7
HanXRQChr11g0344041 Helianthus annuus HOM05D003186 ORTHO05D003452 2.6e-07 59.7 287 27.5
Manes.05G059100 Manihot esculenta HOM05D003186 ORTHO05D003452 2.6e-07 59.7 327 27.8
Sopen01g035390 Solanum pennellii HOM05D003186 ORTHO05D003452 2.6e-07 59.7 94 41.5
Gohir.A08G141000 Gossypium hirsutum HOM05D003186 ORTHO05D003452 4.4e-07 58.9 299 26.4
Gohir.D11G078500 Gossypium hirsutum HOM05D003186 ORTHO05D003452 4.4e-07 58.9 292 26.0
Gorai.007G084000 Gossypium raimondii HOM05D003186 ORTHO05D003452 4.4e-07 58.9 292 26.0
Peaxi162Scf00745g00012 Petunia axillaris HOM05D003186 ORTHO05D003452 4.4e-07 58.9 101 38.6
BraA04t15902Z Brassica rapa HOM05D003186 ORTHO05D003452 5.7e-07 58.5 101 39.6
FAN10G1238 Fragaria x ananassa HOM05D003186 ORTHO05D003452 5.7e-07 58.5 103 43.7
FAN10G4096 Fragaria x ananassa HOM05D003186 ORTHO05D003452 5.7e-07 58.5 103 43.7
Glyma.07G120800 Glycine max HOM05D003186 ORTHO05D003452 5.7e-07 58.5 277 29.6
Gohir.A11G073800 Gossypium hirsutum HOM05D003186 ORTHO05D003452 5.7e-07 58.5 87 43.7
A04p33400 Brassica napus HOM05D003186 ORTHO05D003452 7.5e-07 58.2 252 30.6
Gohir.A08G055900 Gossypium hirsutum HOM05D003186 ORTHO05D003452 7.5e-07 58.2 92 40.2
Lj1g0019973 Lotus japonicus HOM05D003186 ORTHO05D003452 7.5e-07 58.2 309 27.5
Thhalv10006502m.g Eutrema salsugineum HOM05D003186 ORTHO05D003452 9.8e-07 57.8 304 25.3
Oeu024385.1 Olea europaea HOM05D003186 ORTHO05D003452 9.8e-07 57.8 93 43.0
Psat3g101600 Pisum sativum HOM05D003186 ORTHO05D003452 9.8e-07 57.8 313 27.5
A04p01780 Brassica napus HOM05D003186 ORTHO05D003452 1.3e-06 57.4 101 39.6
Prupe.2G114900 Prunus persica HOM05D003186 ORTHO05D003452 1.3e-06 57.4 81 44.4
BraA04t18801Z Brassica rapa HOM05D003186 ORTHO05D003452 1.7e-06 57.0 251 29.9
CANSAT25G0028 Cannabis sativa HOM05D003186 ORTHO05D003452 1.7e-06 57.0 109 40.4
Cfa011019 Carpinus fangiana HOM05D003186 ORTHO05D003452 1.7e-06 57.0 314 27.4
Nn6g33672 Nelumbo nucifera HOM05D003186 ORTHO05D003452 1.7e-06 57.0 247 29.1
ECA248G0129 Erigeron canadensis HOM05D003186 ORTHO05D003452 2.2e-06 56.6 299 26.8
FvH4_7g08720 Fragaria vesca HOM05D003186 ORTHO05D003452 2.2e-06 56.6 100 41.0
HanXRQChr17g0550401 Helianthus annuus HOM05D003186 ORTHO05D003452 2.2e-06 56.6 89 41.6
Lalb_Chr03g0040811 Lupinus albus HOM05D003186 ORTHO05D003452 2.2e-06 56.6 285 27.4
SalBow5G4877 Salvia bowleyana HOM05D003186 ORTHO05D003452 2.2e-06 56.6 67 50.7
SGA_v2.0_scaffold95G28726 Striga asiatica HOM05D003186 ORTHO05D003452 2.2e-06 56.6 64 51.6
MSTRG.28131 Avicennia marina HOM05D003186 ORTHO05D003452 2.8e-06 56.2 74 51.4
BcaB02g08836 Brassica carinata HOM05D003186 ORTHO05D003452 2.8e-06 56.2 292 29.1
Haze_02907 Corylus avellana HOM05D003186 ORTHO05D003452 2.8e-06 56.2 316 27.5
Migut.N01712 Erythranthe guttata HOM05D003186 ORTHO05D003452 2.8e-06 56.2 66 51.5
FAN01G1315 Fragaria x ananassa HOM05D003186 ORTHO05D003452 2.8e-06 56.2 103 42.7
Rhsim07G0039500 Rhododendron simsii HOM05D003186 ORTHO05D003452 2.8e-06 56.2 297 27.6
unitig_750.g28400 Utricularia gibba HOM05D003186 ORTHO05D003452 2.8e-06 56.2 272 28.3
Aa31LG1G26150 Aethionema arabicum HOM05D003186 ORTHO05D003452 3.7e-06 55.8 96 43.8
Carub.0004s2715 Capsella rubella HOM05D003186 ORTHO05D003452 3.7e-06 55.8 88 47.7
Glyma.03G103001 Glycine max HOM05D003186 ORTHO05D003452 3.7e-06 55.8 292 26.7
Gorai.004G168400 Gossypium raimondii HOM05D003186 ORTHO05D003452 3.7e-06 55.8 303 26.1
HanXRQChr04g0113081 Helianthus annuus HOM05D003186 ORTHO05D003452 3.7e-06 55.8 58 56.9
Nitab4.5_0004088g0100 Nicotiana tabacum HOM05D003186 ORTHO05D003452 3.7e-06 55.8 112 37.5
AT2G44600 Arabidopsis thaliana HOM05D003186 ORTHO05D003452 4.9e-06 55.5 98 45.9
Lj3g0018708 Lotus japonicus HOM05D003186 ORTHO05D003452 4.9e-06 55.5 286 27.3
FAN06G1121 Fragaria x ananassa HOM05D003186 ORTHO05D003452 6.3e-06 55.1 100 40.0
PGR042G2698 Punica granatum HOM05D003186 ORTHO05D003452 6.3e-06 55.1 102 37.3
MSTRG.17102 Avicennia marina HOM05D003186 ORTHO05D003452 8.3e-06 54.7 96 41.7
Nitab4.5_0006873g0020 Nicotiana tabacum HOM05D003186 ORTHO05D003452 8.3e-06 54.7 112 36.6


User provided reference genes

Program Settings