Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc23g0004340 Simmondsia chinensis HOM05D003201 ORTHO05D008914 5.5e-115 417.5 196 100.0
Hund03239 Selenicereus undatus HOM05D003201 ORTHO05D008914 4.5e-85 318.2 209 71.3
Dinv37468 Davidia involucrata HOM05D003201 ORTHO05D008914 1.2e-77 293.5 209 67.0
QL12p025722 Quercus lobata HOM05D003201 ORTHO05D008914 4.6e-77 291.6 209 66.5
CSS0009288 Camellia sinensis var. sinensis HOM05D003201 ORTHO05D008914 3.0e-76 288.9 209 65.6
EL10Ac8g19259 Beta vulgaris HOM05D003201 ORTHO05D008914 5.0e-76 288.1 209 64.6
CSS0050223 Camellia sinensis var. sinensis HOM05D003201 ORTHO05D008914 5.0e-76 288.1 209 65.6
GSVIVG01035604001 Vitis vinifera HOM05D003201 ORTHO05D008914 1.5e-75 286.6 209 65.6
CiPaw.07G210300 Carya illinoinensis HOM05D003201 ORTHO05D008914 1.2e-74 283.5 209 66.0
AUR62028026 Chenopodium quinoa HOM05D003201 ORTHO05D008914 2.1e-74 282.7 209 61.7
MD15G1105100 Malus domestica HOM05D003201 ORTHO05D008914 4.0e-73 278.5 209 64.6
Peaxi162Scf00314g00636 Petunia axillaris HOM05D003201 ORTHO05D008914 1.5e-72 276.6 205 63.4
Nitab4.5_0012553g0020 Nicotiana tabacum HOM05D003201 ORTHO05D008914 4.4e-72 275.0 205 62.0
Manes.02G219100 Manihot esculenta HOM05D003201 ORTHO05D008914 5.8e-72 274.6 209 63.2
Actinidia29333 Actinidia chinensis HOM05D003201 ORTHO05D008914 9.8e-72 273.9 211 63.0
Nitab4.5_0000391g0210 Nicotiana tabacum HOM05D003201 ORTHO05D008914 2.2e-71 272.7 205 62.0
Duzib084G1420 Durio zibethinus HOM05D003201 ORTHO05D008914 2.9e-71 272.3 214 62.1
PGSC0003DMG402028340 Solanum tuberosum HOM05D003201 ORTHO05D008914 2.9e-71 272.3 205 62.4
ClCG08G012570 Citrullus lanatus HOM05D003201 ORTHO05D008914 4.9e-71 271.6 210 61.9
MELO3C011176.2 Cucumis melo HOM05D003201 ORTHO05D008914 6.4e-71 271.2 209 61.2
Thecc.03G318200 Theobroma cacao HOM05D003201 ORTHO05D008914 6.4e-71 271.2 207 62.8
Cc11_g12550 Coffea canephora HOM05D003201 ORTHO05D008914 1.1e-70 270.4 215 60.5
DCAR_002183 Daucus carota HOM05D003201 ORTHO05D008914 1.1e-70 270.4 209 62.2
CAN.G964.23 Capsicum annuum HOM05D003201 ORTHO05D008914 1.4e-70 270.0 205 61.0
Aqoxy7G00979 Aquilegia oxysepala HOM05D003201 ORTHO05D008914 1.9e-70 269.6 214 60.7
Solyc05g012940.4 Solanum lycopersicum HOM05D003201 ORTHO05D008914 1.9e-70 269.6 205 62.0
CsaV3_2G031270 Cucumis sativus L. HOM05D003201 ORTHO05D008914 4.1e-70 268.5 209 60.8
Gohir.D12G205000 Gossypium hirsutum HOM05D003201 ORTHO05D008914 4.1e-70 268.5 206 62.1
Psat5g023760 Pisum sativum HOM05D003201 ORTHO05D008914 1.2e-69 266.9 209 59.8
HanXRQChr15g0468831 Helianthus annuus HOM05D003201 ORTHO05D008914 1.6e-69 266.5 210 60.5
Ciclev10016172m.g Citrus clementina HOM05D003201 ORTHO05D008914 2.7e-69 265.8 207 61.4
Cpa.g.sc30.52 Carica papaya HOM05D003201 ORTHO05D008914 3.5e-69 265.4 209 58.9
Gorai.008G219900 Gossypium raimondii HOM05D003201 ORTHO05D008914 3.5e-69 265.4 206 61.7
Prupe.1G456900 Prunus persica HOM05D003201 ORTHO05D008914 3.5e-69 265.4 209 63.6
BcaNung03722 Brassica carinata HOM05D000936 ORTHO05D001411 4.6e-69 265.0 183 66.1
SalBow8G4280 Salvia bowleyana HOM05D003201 ORTHO05D008914 4.6e-69 265.0 209 59.3
Sopen05g007740 Solanum pennellii HOM05D003201 ORTHO05D008914 6.0e-69 264.6 205 61.5
FvH4_2g36540 Fragaria vesca HOM05D003201 ORTHO05D008914 7.8e-69 264.2 209 61.2
RcHm_v2.0_Chr6g0305311 Rosa chinensis HOM05D003201 ORTHO05D008914 7.8e-69 264.2 209 59.8
Gohir.A12G202300 Gossypium hirsutum HOM05D003201 ORTHO05D008914 1.0e-68 263.8 206 61.2
TPR.G12401 Trifolium pratense HOM05D003201 ORTHO05D008914 2.3e-68 262.7 209 59.3
THA.LOC104811993 Tarenaya hassleriana HOM05D003201 ORTHO05D008914 3.0e-68 262.3 207 59.9
Glyma.06G078200 Glycine max HOM05D003201 ORTHO05D008914 3.9e-68 261.9 209 58.9
CANSAT54G1971 Cannabis sativa HOM05D003201 ORTHO05D008914 1.5e-67 260.0 210 60.5
Ca_15643_v3 Cicer arietinum L. HOM05D000163 ORTHO05D000219 2.5e-67 259.2 209 58.9
SGA_v2.0_scaffold45G16974 Striga asiatica HOM05D003201 ORTHO05D008914 2.5e-67 259.2 206 58.3
AT4G20325 Arabidopsis thaliana HOM05D003201 ORTHO05D008914 4.3e-67 258.5 205 59.5
Eucgr.E04307 Eucalyptus grandis HOM05D003201 ORTHO05D008914 4.3e-67 258.5 207 60.4
TWI18G0285 Tripterygium wilfordii HOM05D003201 ORTHO05D008914 5.6e-67 258.1 189 65.1
AL7G33570 Arabidopsis lyrata HOM05D003201 ORTHO05D008914 7.3e-67 257.7 205 59.5
FAN15G0760 Fragaria x ananassa HOM05D003201 ORTHO05D008914 1.2e-66 256.9 209 60.8
Lalb_Chr11g0064231 Lupinus albus HOM05D003201 ORTHO05D008914 1.2e-66 256.9 200 61.5
Phvul.009G102800 Phaseolus vulgaris HOM05D003201 ORTHO05D008914 1.2e-66 256.9 205 59.5
Migut.E00069 Erythranthe guttata HOM05D003201 ORTHO05D008914 1.6e-66 256.5 210 58.1
Sp7g18670 Schrenkiella parvula HOM05D003201 ORTHO05D008914 1.6e-66 256.5 205 59.0
Thhalv10025951m.g Eutrema salsugineum HOM05D003201 ORTHO05D008914 2.1e-66 256.1 205 59.0
Lj1g0010900 Lotus japonicus HOM05D003201 ORTHO05D008914 2.1e-66 256.1 210 58.1
PSO782G1293 Papaver somniferum HOM05D003201 ORTHO05D008914 2.8e-66 255.8 212 57.1
A03p52400 Brassica napus HOM05D000936 ORTHO05D008914 6.2e-66 254.6 205 59.0
BolC7t45584H Brassica oleracea HOM05D000936 ORTHO05D008914 6.2e-66 254.6 205 59.0
Atru.BG.264.p Acer truncatum HOM05D003201 ORTHO05D008914 1.1e-65 253.8 196 63.3
BraA03t14319Z Brassica rapa HOM05D003201 ORTHO05D008914 1.4e-65 253.4 205 58.0
ECA233G2337 Erigeron canadensis HOM05D004148 ORTHO05D004709 1.4e-65 253.4 191 61.3
Glyma.04G077000 Glycine max HOM05D003201 ORTHO05D008914 1.4e-65 253.4 209 57.4
BcaNung03501 Brassica carinata HOM05D003201 ORTHO05D008914 1.8e-65 253.1 205 58.5
C07p50860 Brassica napus HOM05D000936 ORTHO05D008914 1.8e-65 253.1 205 58.5
Carub.0007s2085 Capsella rubella HOM05D003201 ORTHO05D008914 1.8e-65 253.1 205 59.5
BraA01t01146Z Brassica rapa HOM05D003201 ORTHO05D008914 2.3e-65 252.7 204 58.3
arahy.Tifrunner.gnm1.ann1.6BLG7S Arachis hypogaea HOM05D003201 ORTHO05D008914 1.2e-64 250.4 231 54.1
CARHR227150 Cardamine hirsuta HOM05D003201 ORTHO05D008914 1.5e-64 250.0 205 58.0
BcaC06g30651 Brassica carinata HOM05D003201 ORTHO05D008914 2.0e-64 249.6 205 58.0
BolC1t01393H Brassica oleracea HOM05D000280 ORTHO05D004510 3.4e-64 248.8 205 56.6
Lsat_1_v5_gn_5_73181 Lactuca sativa HOM05D003201 ORTHO05D008914 3.4e-64 248.8 212 56.1
A01p12040 Brassica napus HOM05D003201 ORTHO05D008914 5.8e-64 248.1 204 57.4
PGR042G2091 Punica granatum HOM05D003201 ORTHO05D008914 5.8e-64 248.1 209 56.5
arahy.Tifrunner.gnm1.ann1.N5J460 Arachis hypogaea HOM05D003201 ORTHO05D008914 9.9e-64 247.3 194 59.8
C01p14340 Brassica napus HOM05D003201 ORTHO05D008914 1.3e-63 246.9 205 56.6
Aa31LG6G2740 Aethionema arabicum HOM05D003201 ORTHO05D008914 1.4e-62 243.4 207 57.0
Rhsim07G0174100 Rhododendron simsii HOM05D003201 ORTHO05D008914 5.4e-62 241.5 305 43.6
TAR636G2614 Trochodendron aralioides HOM05D003201 ORTHO05D008914 7.1e-62 241.1 158 70.3
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 6.6e-60 234.6 207 57.5
VMungo1309G0938 Vigna mungo HOM05D003201 ORTHO05D008914 3.3e-59 232.3 161 65.8
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 2.0e-56 223.0 250 48.8
SEGI_35572 Sequoiadendron giganteum HOM05D003201 ORTHO05D008914 2.0e-56 223.0 210 49.0
FAN20G1097 Fragaria x ananassa HOM05D000163 ORTHO05D008914 2.6e-56 222.6 179 59.2
ATR0686G110 Amborella trichopoda HOM05D003201 ORTHO05D008914 2.2e-55 219.5 172 56.4
HPP92_024271 Vanilla planifolia HOM05D003201 ORTHO05D008914 3.2e-54 215.7 187 56.1
AUR62020698 Chenopodium quinoa HOM05D003201 ORTHO05D008914 7.1e-54 214.5 209 50.7
vmacro05085 Vaccinium macrocarpon HOM05D003201 ORTHO05D008914 3.2e-46 189.1 430 30.2
Mapoly0037s0034 Marchantia polymorpha HOM05D003201 ORTHO05D008914 2.7e-45 186.0 207 43.0
SMO115G0061 Selaginella moellendorffii HOM05D003201 ORTHO05D008914 2.3e-44 183.0 176 45.5
AagrBONN_evm.TU.Sc2ySwM_344.2003 Anthoceros agrestis HOM05D003201 ORTHO05D008914 3.0e-44 182.6 167 47.3
FAN27G2114 Fragaria x ananassa HOM05D000163 ORTHO05D000219 2.5e-43 179.5 142 61.3
Pp3c10_22770 Physcomitrium patens HOM05D003201 ORTHO05D008914 2.8e-42 176.0 207 42.0
SHI31610 Sapria himalayana HOM05D003201 ORTHO05D008914 1.8e-41 173.3 110 67.3
Potri.006G281101 Populus trichocarpa HOM05D003201 ORTHO05D008914 3.1e-41 172.6 138 60.1
unitig_32.g11042 Utricularia gibba HOM05D003201 ORTHO05D008914 7.4e-35 151.4 160 51.2
Sed0017242 Sechium edule HOM05D003201 ORTHO05D008914 4.0e-33 145.6 114 58.8
Nn7g38306 Nelumbo nucifera HOM05D003201 ORTHO05D008914 4.5e-32 142.1 103 62.1
MD08G1125300 Malus domestica HOM05D003201 ORTHO05D008914 9.9e-32 141.0 92 67.4
COL.COLO4_10365 Corchorus olitorius HOM05D003201 ORTHO05D008914 3.8e-23 112.5 93 59.1
Hma1.2p1_1357F.1_g277905 Hydrangea macrophylla HOM05D003201 ORTHO05D008914 1.4e-22 110.5 71 69.0
Os04g0476400 Oryza sativa ssp. japonica HOM05D003201 ORTHO05D008914 1.4e-22 110.5 85 58.8
TPR.G12326 Trifolium pratense HOM05D003201 ORTHO05D008914 1.2e-21 107.5 66 72.7
Zm00001eb079750 Zea mays HOM05D003201 ORTHO05D008914 1.0e-20 104.4 120 42.5
CBR_g23989 Chara braunii HOM05D003201 ORTHO05D008914 1.1e-17 94.4 68 57.4
Cre07.g320800 Chlamydomonas reinhardtii HOM05D003201 ORTHO05D008914 6.1e-13 78.6 238 23.9
CBR_g23991 Chara braunii HOM05D003201 ORTHO05D008914 6.3e-10 68.6 46 58.7
CDE05G1961 Ceratophyllum demersum HOM05D003201 ORTHO05D008914 5.3e-09 65.5 71 49.3


User provided reference genes

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