Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc23g0004310 Simmondsia chinensis HOM05D006291 ORTHO05D007669 6.1e-62 240.7 129 100.0
AUR62020734 Chenopodium quinoa HOM05D006291 ORTHO05D007669 7.9e-54 213.8 128 85.9
AUR62027977 Chenopodium quinoa HOM05D006291 ORTHO05D007669 7.9e-54 213.8 128 85.9
Manes.02G198400 Manihot esculenta HOM05D006291 ORTHO05D007669 1.8e-53 212.6 128 85.9
Ah.10g032820 Amaranthus hybridus HOM05D006291 ORTHO05D007669 3.0e-53 211.8 128 84.4
ECA234G1508 Erigeron canadensis HOM05D006291 ORTHO05D007669 6.7e-53 210.7 128 85.2
Potri.006G079700 Populus trichocarpa HOM05D006291 ORTHO05D007669 8.8e-53 210.3 128 85.2
Sabra06G0060300 Salix brachista HOM05D006291 ORTHO05D007669 1.1e-52 209.9 128 85.2
EL10Ac2g03616 Beta vulgaris HOM05D006291 ORTHO05D007669 1.5e-52 209.5 128 83.6
Actinidia02463 Actinidia chinensis HOM05D006291 ORTHO05D007669 7.4e-52 207.2 129 85.3
Nn8g40626 Nelumbo nucifera HOM05D006291 ORTHO05D007669 9.7e-52 206.8 128 84.4
HanXRQChr12g0358571 Helianthus annuus HOM05D006291 ORTHO05D007669 1.7e-51 206.1 128 83.6
Rhsim01G0107900 Rhododendron simsii HOM05D006291 ORTHO05D007669 1.7e-51 206.1 127 83.5
Nitab4.5_0003139g0110 Nicotiana tabacum HOM05D006291 ORTHO05D007669 3.7e-51 204.9 128 82.0
Actinidia38532 Actinidia chinensis HOM05D006291 ORTHO05D007669 4.8e-51 204.5 128 83.6
MSTRG.10473 Avicennia marina HOM05D006291 ORTHO05D007669 4.8e-51 204.5 129 82.2
arahy.Tifrunner.gnm1.ann1.8H1PJC Arachis hypogaea HOM05D006291 ORTHO05D007669 6.3e-51 204.1 129 82.2
CAN.G54.10 Capsicum annuum HOM05D006291 ORTHO05D007669 6.3e-51 204.1 128 82.0
PGSC0003DMG400013569 Solanum tuberosum HOM05D006291 ORTHO05D007669 6.3e-51 204.1 128 82.8
Gohir.D05G287200 Gossypium hirsutum HOM05D006291 ORTHO05D007669 1.1e-50 203.4 129 81.4
FAN07G2657 Fragaria x ananassa HOM05D006291 ORTHO05D007669 1.4e-50 203.0 128 81.2
RcHm_v2.0_Chr4g0397141 Rosa chinensis HOM05D006291 ORTHO05D007669 1.8e-50 202.6 128 81.2
HanXRQChr10g0309491 Helianthus annuus HOM05D006291 ORTHO05D007669 2.4e-50 202.2 127 83.5
Peaxi162Scf00474g00519 Petunia axillaris HOM05D006291 ORTHO05D007669 2.4e-50 202.2 128 81.2
SGA_v2.0_scaffold21G09601 Striga asiatica HOM05D006291 ORTHO05D007669 2.4e-50 202.2 129 80.6
Aqoxy7G02914 Aquilegia oxysepala HOM05D006291 ORTHO05D007669 3.1e-50 201.8 129 80.6
Duzib128G2031 Durio zibethinus HOM05D006291 ORTHO05D007669 3.1e-50 201.8 128 82.8
Cc06_g23850 Coffea canephora HOM05D006291 ORTHO05D007669 4.1e-50 201.4 129 82.9
GSVIVG01032270001 Vitis vinifera HOM05D006291 ORTHO05D007669 4.1e-50 201.4 128 82.8
FvH4_4g05950 Fragaria vesca HOM05D006291 ORTHO05D007669 5.3e-50 201.1 128 80.5
FAN22G0966 Fragaria x ananassa HOM05D006291 ORTHO05D007669 7.0e-50 200.7 128 80.5
Potri.018G149200 Populus trichocarpa HOM05D006291 ORTHO05D007669 7.0e-50 200.7 128 82.0
Solyc07g042620.4 Solanum lycopersicum HOM05D006291 ORTHO05D007669 7.0e-50 200.7 126 82.5
Sopen07g022310 Solanum pennellii HOM05D006291 ORTHO05D007669 7.0e-50 200.7 126 82.5
THA.LOC104826574 Tarenaya hassleriana HOM05D006291 ORTHO05D007669 7.0e-50 200.7 129 81.4
Duzib128G1629 Durio zibethinus HOM05D006291 ORTHO05D007669 9.1e-50 200.3 128 82.0
COL.COLO4_05650 Corchorus olitorius HOM05D006291 ORTHO05D007669 1.2e-49 199.9 129 82.2
Migut.L01922 Erythranthe guttata HOM05D006291 ORTHO05D007669 1.2e-49 199.9 129 80.6
Lj3g0009914 Lotus japonicus HOM05D006291 ORTHO05D007669 1.2e-49 199.9 128 78.9
MD13G1231800 Malus domestica HOM05D006291 ORTHO05D007669 1.2e-49 199.9 128 81.2
CSS0003994 Camellia sinensis var. sinensis HOM05D006291 ORTHO05D007669 2.0e-49 199.1 129 82.2
CSS0013846 Camellia sinensis var. sinensis HOM05D006291 ORTHO05D007669 2.0e-49 199.1 129 82.2
MD16G1236600 Malus domestica HOM05D006291 ORTHO05D007669 2.6e-49 198.7 128 81.2
VMungo1127G1563 Vigna mungo HOM05D006291 ORTHO05D007669 2.6e-49 198.7 128 78.9
CiPaw.16G104700 Carya illinoinensis HOM05D006291 ORTHO05D007669 3.5e-49 198.4 128 82.0
TAR362G0416 Trochodendron aralioides HOM05D006291 ORTHO05D007669 4.5e-49 198.0 128 79.7
Ciclev10009894m.g Citrus clementina HOM05D006291 ORTHO05D007669 5.9e-49 197.6 128 79.7
Phvul.011G206700 Phaseolus vulgaris HOM05D006291 ORTHO05D007669 5.9e-49 197.6 128 78.9
Eucgr.G00957 Eucalyptus grandis HOM05D006291 ORTHO05D007669 7.7e-49 197.2 128 78.9
Zm00001eb240760 Zea mays HOM05D006291 ORTHO05D007669 1.0e-48 196.8 128 75.8
Lalb_Chr01g0007741 Lupinus albus HOM05D006291 ORTHO05D007669 1.3e-48 196.4 129 79.1
HPP92_021942 Vanilla planifolia HOM05D006291 ORTHO05D007669 1.3e-48 196.4 128 79.7
PSO170G1648 Papaver somniferum HOM05D006291 ORTHO05D007669 1.7e-48 196.1 129 79.1
Prupe.1G063000 Prunus persica HOM05D006291 ORTHO05D007669 2.2e-48 195.7 128 80.5
PGR044G0028 Punica granatum HOM05D006291 ORTHO05D007669 2.2e-48 195.7 128 79.7
arahy.Tifrunner.gnm1.ann1.SCY2K5 Arachis hypogaea HOM05D006291 ORTHO05D007669 3.8e-48 194.9 128 79.7
PSO063G7114 Papaver somniferum HOM05D006291 ORTHO05D007669 3.8e-48 194.9 129 78.3
TPR.G27823 Trifolium pratense HOM05D006291 ORTHO05D007669 3.8e-48 194.9 129 77.5
Carub.0013s0004 Capsella rubella HOM05D006291 ORTHO05D007669 5.0e-48 194.5 129 78.3
Glyma.13G197100 Glycine max HOM05D006291 ORTHO05D007669 5.0e-48 194.5 128 76.6
Ca_23954_v3 Cicer arietinum L. HOM05D006291 ORTHO05D007669 6.5e-48 194.1 129 77.5
Gorai.009G302200 Gossypium raimondii HOM05D006291 ORTHO05D007669 6.5e-48 194.1 131 78.6
CANSAT56G1353 Cannabis sativa HOM05D006291 ORTHO05D007669 1.1e-47 193.4 128 78.9
Glyma.15G235500 Glycine max HOM05D006291 ORTHO05D007669 1.1e-47 193.4 128 76.6
HPP92_021968 Vanilla planifolia HOM05D006291 ORTHO05D007669 1.1e-47 193.4 127 78.7
Gohir.A05G286200 Gossypium hirsutum HOM05D006291 ORTHO05D007669 2.5e-47 192.2 122 80.3
TWI63G0490 Tripterygium wilfordii HOM05D006291 ORTHO05D007669 3.2e-47 191.8 128 78.1
CSS0029803 Camellia sinensis var. sinensis HOM05D006291 ORTHO05D007669 9.4e-47 190.3 135 77.8
unitig_8.g3543 Utricularia gibba HOM05D006291 ORTHO05D007669 9.4e-47 190.3 126 77.8
Psat0s418g0040 Pisum sativum HOM05D006291 ORTHO05D007669 1.6e-46 189.5 129 74.4
FAN12G2114 Fragaria x ananassa HOM05D006291 ORTHO05D007669 2.1e-46 189.1 130 76.9
ATR0580G035 Amborella trichopoda HOM05D006291 ORTHO05D007669 3.6e-46 188.3 126 75.4
CANSAT56G3141 Cannabis sativa HOM05D006291 ORTHO05D007669 4.7e-46 188.0 128 77.3
CDE02G3570 Ceratophyllum demersum HOM05D006291 ORTHO05D007669 6.1e-46 187.6 125 77.6
Ca_23960_v3 Cicer arietinum L. HOM05D006291 ORTHO05D007669 1.0e-45 186.8 121 79.3
Thecc.10G119800 Theobroma cacao HOM05D006291 ORTHO05D007669 1.0e-45 186.8 128 79.7
AT2G07340 Arabidopsis thaliana HOM05D006291 ORTHO05D007669 1.4e-45 186.4 129 74.4
CDE06G0918 Ceratophyllum demersum HOM05D006291 ORTHO05D007669 1.8e-45 186.0 127 74.8
Hund19355 Selenicereus undatus HOM05D006291 ORTHO05D007669 1.8e-45 186.0 120 84.2
Lsat_1_v5_gn_5_80980 Lactuca sativa HOM05D006291 ORTHO05D007669 2.3e-45 185.7 129 79.8
CsaV3_2G009230 Cucumis sativus L. HOM05D006291 ORTHO05D007669 4.0e-45 184.9 119 80.7
Oeu028819.1 Olea europaea HOM05D006291 ORTHO05D007669 4.4e-44 181.4 113 84.1
CDE06G1428 Ceratophyllum demersum HOM05D006291 ORTHO05D007669 1.3e-43 179.9 127 74.8
Sed0008839 Sechium edule HOM05D006291 ORTHO05D007669 4.8e-43 177.9 121 77.7
Sp6g13890 Schrenkiella parvula HOM05D006291 ORTHO05D007669 4.1e-42 174.9 129 73.6
BcaB01g04158 Brassica carinata HOM05D006291 ORTHO05D007669 4.5e-41 171.4 137 67.2
Thhalv10015026m.g Eutrema salsugineum HOM05D006291 ORTHO05D007669 1.0e-40 170.2 129 72.1
MELO3C003910.2 Cucumis melo HOM05D006291 ORTHO05D007669 1.7e-40 169.5 119 75.6
Aa31LG8G11030 Aethionema arabicum HOM05D006291 ORTHO05D007669 3.8e-40 168.3 172 57.6
Dinv26485 Davidia involucrata HOM05D006291 ORTHO05D007669 1.5e-39 166.4 125 75.2
A03p16050 Brassica napus HOM05D006291 ORTHO05D007669 3.2e-39 165.2 129 69.8
BcaC01g06135 Brassica carinata HOM05D006291 ORTHO05D007669 5.5e-39 164.5 129 69.0
C03p18890 Brassica napus HOM05D006291 ORTHO05D007669 5.5e-39 164.5 129 69.0
DCAR_020455 Daucus carota HOM05D006291 ORTHO05D007669 7.2e-39 164.1 104 83.7
Pp3c19_4350 Physcomitrium patens HOM05D006291 ORTHO05D007669 4.7e-38 161.4 128 63.3
Mapoly0027s0144 Marchantia polymorpha HOM05D006291 ORTHO05D007669 1.5e-36 156.4 128 60.9
Medtr8g039140 Medicago truncatula HOM05D006291 ORTHO05D007669 2.6e-36 155.6 104 75.0
Actinidia02472 Actinidia chinensis HOM05D006291 ORTHO05D007669 1.3e-35 153.3 98 82.7
MBI16_g09344_MAGBIO Magnolia biondii HOM05D006291 ORTHO05D007669 4.8e-35 151.4 186 52.2
Nitab4.5_0000170g0080 Nicotiana tabacum HOM05D006291 ORTHO05D007669 4.1e-34 148.3 96 79.2
TWI32G0019 Tripterygium wilfordii HOM05D006291 ORTHO05D007669 4.1e-34 148.3 116 68.1
AL3G44130 Arabidopsis lyrata HOM05D006291 ORTHO05D007669 4.5e-33 144.8 99 73.7
Dinv12620 Davidia involucrata HOM05D006291 ORTHO05D007669 5.0e-32 141.4 92 81.5
Atru.BG.15.p Acer truncatum HOM05D006291 ORTHO05D007669 6.5e-32 141.0 101 75.2
SMO200G0161 Selaginella moellendorffii HOM05D006291 ORTHO05D007669 5.7e-28 127.9 120 55.0
BcaC04g20645 Brassica carinata HOM05D006291 ORTHO05D007669 2.7e-25 119.0 92 69.6
AagrBONN_evm.TU.Sc2ySwM_362.1895 Anthoceros agrestis HOM05D006291 ORTHO05D007669 5.9e-25 117.9 99 55.6
Nitab4.5_0002603g0030 Nicotiana tabacum HOM05D006291 ORTHO05D007669 1.0e-24 117.1 71 81.7
BraA03t10896Z Brassica rapa HOM05D006291 ORTHO05D007669 1.7e-24 116.3 94 68.1
SalBow3G3584 Salvia bowleyana HOM05D006291 ORTHO05D007669 5.6e-23 111.3 110 58.2
BolC9t56988H Brassica oleracea HOM05D006291 ORTHO05D007669 3.6e-22 108.6 92 66.3
C09p41100 Brassica napus HOM05D006291 ORTHO05D007669 1.8e-21 106.3 93 64.5
Actinidia07563 Actinidia chinensis HOM05D006291 ORTHO05D007669 1.2e-20 103.6 66 81.8
Os02g0462900 Oryza sativa ssp. japonica HOM05D006291 ORTHO05D007669 1.5e-20 103.2 63 77.8
CARHR104040 Cardamine hirsuta HOM05D006291 ORTHO05D007669 4.9e-19 98.2 70 75.7
ClCG11G011210 Citrullus lanatus HOM05D006291 ORTHO05D007669 1.1e-18 97.1 62 80.6
SEGI_05817 Sequoiadendron giganteum HOM05D006291 ORTHO05D007669 5.4e-18 94.7 62 75.8
BolC3t14280H Brassica oleracea HOM05D006291 ORTHO05D007669 2.7e-17 92.4 62 75.8
BolC3t14281H Brassica oleracea HOM05D006291 ORTHO05D007669 3.9e-16 88.6 65 69.2
Cpa.g.sc91.61 Carica papaya HOM05D006291 ORTHO05D007669 1.5e-15 86.7 55 81.8
BcaB08g35517 Brassica carinata HOM05D006291 ORTHO05D007669 3.3e-15 85.5 64 65.6
PRCOL_00006384 Prasinoderma coloniale HOM05D006291 ORTHO05D007669 2.6e-12 75.9 117 32.5
MCO11G208 Micromonas commoda HOM05D006291 ORTHO05D007669 7.5e-12 74.3 115 35.7
CBR_g16047 Chara braunii HOM05D006291 ORTHO05D007669 4.1e-10 68.6 61 54.1
Haze_19088 Corylus avellana HOM05D000287 ORTHO05D000319 1.7e-08 63.2 41 75.6
vmacro20755 Vaccinium macrocarpon HOM05D006291 ORTHO05D007669 2.3e-08 62.8 53 66.0
Cre09.g405400 Chlamydomonas reinhardtii HOM05D006291 ORTHO05D007669 1.5e-07 60.1 119 28.6


User provided reference genes

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