Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc23g0004130 Simmondsia chinensis HOM05D004474 ORTHO05D005538 1.8e-108 396.0 206 100.0
Sc13g0002280 Simmondsia chinensis HOM05D004474 ORTHO05D005538 3.1e-28 129.4 79 87.3
AT2G42130 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 4.4e-22 109.0 79 69.6
arahy.Tifrunner.gnm1.ann1.I8NV4T Arachis hypogaea HOM05D004474 ORTHO05D005538 7.5e-22 108.2 79 69.6
Ah.04g152460 Amaranthus hybridus HOM05D004474 ORTHO05D005538 9.8e-22 107.8 82 68.3
Atru.chr8.1110 Acer truncatum HOM05D004474 ORTHO05D005538 1.3e-21 107.5 88 62.5
Ciclev10012319m.g Citrus clementina HOM05D004474 ORTHO05D005538 1.3e-21 107.5 79 69.6
arahy.Tifrunner.gnm1.ann1.Q7TVYL Arachis hypogaea HOM05D004474 ORTHO05D005538 1.7e-21 107.1 79 68.4
EL10Ac3g06918 Beta vulgaris HOM05D004474 ORTHO05D005538 1.7e-21 107.1 79 68.4
Eucgr.A02451 Eucalyptus grandis HOM05D004474 ORTHO05D005538 2.2e-21 106.7 79 65.8
Manes.09G035300 Manihot esculenta HOM05D004474 ORTHO05D005538 2.2e-21 106.7 78 67.9
AL4G40500 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 2.9e-21 106.3 79 68.4
AL5G39660 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 2.9e-21 106.3 88 60.2
AT3G58010 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 2.9e-21 106.3 79 67.1
Lj5g0007104 Lotus japonicus HOM05D004474 ORTHO05D005538 2.9e-21 106.3 79 67.1
PGR004G1518 Punica granatum HOM05D004474 ORTHO05D005538 2.9e-21 106.3 79 68.4
Sp4g24340 Schrenkiella parvula HOM05D004474 ORTHO05D005538 2.9e-21 106.3 88 63.6
Hund24791 Selenicereus undatus HOM05D004474 ORTHO05D005538 2.9e-21 106.3 76 69.7
CARHR137190 Cardamine hirsuta HOM05D004474 ORTHO05D005538 3.7e-21 105.9 79 69.6
Medtr1g054070 Medicago truncatula HOM05D004474 ORTHO05D005538 4.9e-21 105.5 79 62.0
QL07p023712 Quercus lobata HOM05D004474 ORTHO05D005538 4.9e-21 105.5 79 65.8
BcaC02g12461 Brassica carinata HOM05D004474 ORTHO05D005538 6.4e-21 105.1 79 67.1
C04p03280 Brassica napus HOM05D004474 ORTHO05D005538 6.4e-21 105.1 79 67.1
BolC4t21967H Brassica oleracea HOM05D004474 ORTHO05D005538 6.4e-21 105.1 79 67.1
BraA05t19266Z Brassica rapa HOM05D004474 ORTHO05D005538 6.4e-21 105.1 79 67.1
Lalb_Chr21g0316311 Lupinus albus HOM05D004474 ORTHO05D005538 6.4e-21 105.1 76 69.7
A05p02740 Brassica napus HOM05D004474 ORTHO05D005538 8.3e-21 104.8 79 67.1
Thhalv10017981m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 8.3e-21 104.8 79 64.6
Carub.0004s2447 Capsella rubella HOM05D004474 ORTHO05D005538 1.1e-20 104.4 79 64.6
FAN14G3363 Fragaria x ananassa HOM05D004474 ORTHO05D005538 1.1e-20 104.4 79 64.6
RcHm_v2.0_Chr3g0479711 Rosa chinensis HOM05D004474 ORTHO05D005538 1.1e-20 104.4 76 67.1
BcaNung04406 Brassica carinata HOM05D004474 ORTHO05D005538 1.4e-20 104.0 79 67.1
FvH4_6g22380 Fragaria vesca HOM05D004474 ORTHO05D005538 1.4e-20 104.0 79 64.6
Prupe.7G076700 Prunus persica HOM05D004474 ORTHO05D005538 1.4e-20 104.0 79 67.1
Sabra16G0050000 Salix brachista HOM05D004474 ORTHO05D005538 1.4e-20 104.0 78 66.7
Ca_12079_v3 Cicer arietinum L. HOM05D004474 ORTHO05D005538 1.8e-20 103.6 79 63.3
Dinv14299 Davidia involucrata HOM05D004474 ORTHO05D005538 1.8e-20 103.6 79 65.8
FAN02G3755 Fragaria x ananassa HOM05D004474 ORTHO05D005538 1.8e-20 103.6 126 48.4
Gohir.A09G128000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 1.8e-20 103.6 76 65.8
Gohir.D09G124000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 1.8e-20 103.6 76 65.8
Gorai.006G142800 Gossypium raimondii HOM05D004474 ORTHO05D005538 1.8e-20 103.6 76 65.8
FAN05G0702 Fragaria x ananassa HOM05D004474 ORTHO05D005538 2.4e-20 103.2 79 63.3
FAN09G2770 Fragaria x ananassa HOM05D004474 ORTHO05D005538 2.4e-20 103.2 79 63.3
Potri.016G045900 Populus trichocarpa HOM05D004474 ORTHO05D005538 2.4e-20 103.2 78 66.7
Hund19202 Selenicereus undatus HOM05D004474 ORTHO05D005538 2.4e-20 103.2 76 67.1
CANSAT64G2813 Cannabis sativa HOM05D004474 ORTHO05D005538 3.2e-20 102.8 79 64.6
Cfa020166 Carpinus fangiana HOM05D004474 ORTHO05D005538 3.2e-20 102.8 75 66.7
Psat0s4417g0040 Pisum sativum HOM05D004474 ORTHO05D005538 3.2e-20 102.8 79 63.3
SGA_v2.0_scaffold274G46485 Striga asiatica HOM05D004474 ORTHO05D005538 3.2e-20 102.8 76 68.4
Thecc.05G171200 Theobroma cacao HOM05D004474 ORTHO05D005538 3.2e-20 102.8 76 67.1
CsaV3_3G038850 Cucumis sativus L. HOM05D004474 ORTHO05D005538 4.1e-20 102.4 79 62.0
MD14G1058000 Malus domestica HOM05D004474 ORTHO05D005538 4.1e-20 102.4 76 67.1
THA.LOC104802541 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 4.1e-20 102.4 76 67.1
TPR.G40276 Trifolium pratense HOM05D004474 ORTHO05D005538 4.1e-20 102.4 79 63.3
DCAR_013545 Daucus carota HOM05D004474 ORTHO05D005538 5.4e-20 102.1 75 64.0
Duzib093G0660 Durio zibethinus HOM05D004474 ORTHO05D005538 5.4e-20 102.1 76 65.8
Duzib106G1296 Durio zibethinus HOM05D004474 ORTHO05D005538 5.4e-20 102.1 76 67.1
Glyma.09G111700 Glycine max HOM05D004474 ORTHO05D005538 5.4e-20 102.1 79 64.6
Nitab4.5_0007056g0010 Nicotiana tabacum HOM05D004474 ORTHO05D005538 5.4e-20 102.1 76 64.5
BcaB02g08282 Brassica carinata HOM05D004474 ORTHO05D005538 7.0e-20 101.7 79 62.0
A04p02790 Brassica napus HOM05D004474 ORTHO05D005538 7.0e-20 101.7 79 62.0
BraA04t16003Z Brassica rapa HOM05D004474 ORTHO05D005538 7.0e-20 101.7 79 62.0
PSO339G4529 Papaver somniferum HOM05D004474 ORTHO05D005538 7.0e-20 101.7 79 62.0
CiPaw.10G026600 Carya illinoinensis HOM05D004474 ORTHO05D005538 9.2e-20 101.3 79 65.8
GSVIVG01033499001 Vitis vinifera HOM05D004474 ORTHO05D005538 9.2e-20 101.3 79 60.8
ClCG10G017510 Citrullus lanatus HOM05D004474 ORTHO05D005538 1.2e-19 100.9 79 62.0
Potri.006G192200 Populus trichocarpa HOM05D004474 ORTHO05D005538 1.2e-19 100.9 106 53.8
MELO3C009628.2 Cucumis melo HOM05D004474 ORTHO05D005538 1.6e-19 100.5 79 62.0
Glyma.02G173600 Glycine max HOM05D004474 ORTHO05D005538 1.6e-19 100.5 79 64.6
Haze_19987 Corylus avellana HOM05D004474 ORTHO05D005538 2.0e-19 100.1 75 64.0
HanXRQChr06g0176171 Helianthus annuus HOM05D004474 ORTHO05D005538 2.0e-19 100.1 79 63.3
Sabra06G0147300 Salix brachista HOM05D004474 ORTHO05D005538 2.0e-19 100.1 74 66.2
Aa31LG1G24090 Aethionema arabicum HOM05D004474 ORTHO05D005538 2.7e-19 99.8 111 53.2
BcaC02g09981 Brassica carinata HOM05D004474 ORTHO05D005538 2.7e-19 99.8 79 60.8
C04p34370 Brassica napus HOM05D004474 ORTHO05D005538 2.7e-19 99.8 79 60.8
BolC4t24999H Brassica oleracea HOM05D004474 ORTHO05D005538 2.7e-19 99.8 79 60.8
CiPaw.09G030400 Carya illinoinensis HOM05D004474 ORTHO05D005538 2.7e-19 99.8 79 60.8
MD12G1057400 Malus domestica HOM05D004474 ORTHO05D005538 2.7e-19 99.8 76 65.8
CSS0036713 Camellia sinensis var. sinensis HOM05D004474 ORTHO05D005538 3.5e-19 99.4 76 65.8
Nitab4.5_0002488g0030 Nicotiana tabacum HOM05D004474 ORTHO05D005538 3.5e-19 99.4 76 64.5
Sopen03g015120 Solanum pennellii HOM05D004474 ORTHO05D005538 3.5e-19 99.4 76 64.5
VMungo0720G2191 Vigna mungo HOM05D004474 ORTHO05D005538 3.5e-19 99.4 79 64.6
Carub.0005s2485 Capsella rubella HOM05D004474 ORTHO05D005538 4.6e-19 99.0 79 60.8
CAN.G570.5 Capsicum annuum HOM05D004474 ORTHO05D005538 4.6e-19 99.0 76 64.5
AUR62015371 Chenopodium quinoa HOM05D004474 ORTHO05D005538 4.6e-19 99.0 87 57.5
Hma1.2p1_0676F.1_g201960 Hydrangea macrophylla HOM05D004474 ORTHO05D005538 4.6e-19 99.0 79 64.6
PSO384G2014 Papaver somniferum HOM05D004474 ORTHO05D005538 4.6e-19 99.0 90 56.7
Peaxi162Scf00258g00522 Petunia axillaris HOM05D004474 ORTHO05D005538 4.6e-19 99.0 76 64.5
AUR62012033 Chenopodium quinoa HOM05D004474 ORTHO05D005538 6.0e-19 98.6 72 66.7
COL.COLO4_33985 Corchorus olitorius HOM05D004474 ORTHO05D005538 6.0e-19 98.6 90 57.8
Dinv24073 Davidia involucrata HOM05D004474 ORTHO05D005538 6.0e-19 98.6 76 65.8
Phvul.007G259700 Phaseolus vulgaris HOM05D004474 ORTHO05D005538 7.8e-19 98.2 79 63.3
Actinidia38580 Actinidia chinensis HOM05D004474 ORTHO05D005538 1.0e-18 97.8 76 63.2
Cpa.g.sc85.68 Carica papaya HOM05D004474 ORTHO05D005538 1.0e-18 97.8 76 64.5
CARHR168330 Cardamine hirsuta HOM05D004474 ORTHO05D005538 1.3e-18 97.4 79 58.2
Peaxi162Scf00480g00018 Petunia axillaris HOM05D004474 ORTHO05D005538 1.3e-18 97.4 76 61.8
Nitab4.5_0003600g0060 Nicotiana tabacum HOM05D004474 ORTHO05D005538 1.7e-18 97.1 76 60.5
PGSC0003DMG401023672 Solanum tuberosum HOM05D004474 ORTHO05D005538 1.7e-18 97.1 76 63.2
Thhalv10006122m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 2.3e-18 96.7 79 59.5
Solyc03g062790.3 Solanum lycopersicum HOM05D004474 ORTHO05D005538 3.0e-18 96.3 76 63.2
Aa31LG10G12710 Aethionema arabicum HOM05D004474 ORTHO05D005538 3.9e-18 95.9 76 59.2
Lsat_1_v5_gn_8_75341 Lactuca sativa HOM05D004474 ORTHO05D005538 3.9e-18 95.9 79 59.5
Lj2A366T55 Lonicera japonica HOM05D004474 ORTHO05D005538 3.9e-18 95.9 76 61.8
Sed0015879 Sechium edule HOM05D004474 ORTHO05D005538 3.9e-18 95.9 79 58.2
Nitab4.5_0000324g0040 Nicotiana tabacum HOM05D004474 ORTHO05D005538 5.0e-18 95.5 72 65.3
Nn2g15677 Nelumbo nucifera HOM05D004474 ORTHO05D005538 6.6e-18 95.1 79 57.0
TAR633G0920 Trochodendron aralioides HOM05D004474 ORTHO05D005538 6.6e-18 95.1 90 56.7
CAN.G128.40 Capsicum annuum HOM05D004474 ORTHO05D005538 8.6e-18 94.7 76 61.8
HPP92_002995 Vanilla planifolia HOM05D004474 ORTHO05D005538 8.6e-18 94.7 79 59.5
MSTRG.10843 Avicennia marina HOM05D004474 ORTHO05D005538 1.1e-17 94.4 76 57.9
Oeu033737.2 Olea europaea HOM05D004474 ORTHO05D005538 1.5e-17 94.0 79 58.2
SalBow1G5519 Salvia bowleyana HOM05D004474 ORTHO05D005538 1.5e-17 94.0 88 55.7
Actinidia17270 Actinidia chinensis HOM05D004474 ORTHO05D005538 1.9e-17 93.6 76 61.8
TAR636G3262 Trochodendron aralioides HOM05D004474 ORTHO05D005538 2.5e-17 93.2 79 59.5
ECA236G1848 Erigeron canadensis HOM05D004474 ORTHO05D005538 3.3e-17 92.8 79 58.2
Rhsim04G0096800 Rhododendron simsii HOM05D004474 ORTHO05D005538 3.3e-17 92.8 76 60.5
RhsimUnG0212600 Rhododendron simsii HOM05D004474 ORTHO05D005538 3.3e-17 92.8 76 60.5
BcaB04g18512 Brassica carinata HOM05D004474 ORTHO05D005538 4.3e-17 92.4 79 55.7
MBI04_g33963_MAGBIO Magnolia biondii HOM05D004474 ORTHO05D005538 5.6e-17 92.0 79 54.4
SGA_v2.0_scaffold105G30490 Striga asiatica HOM05D004474 ORTHO05D005538 7.3e-17 91.7 75 56.0
Oeu024481.1 Olea europaea HOM05D004474 ORTHO05D005538 9.5e-17 91.3 81 54.3
Migut.J01832 Erythranthe guttata HOM05D004474 ORTHO05D005538 1.2e-16 90.9 90 51.1
unitig_749.g14029 Utricularia gibba HOM05D004474 ORTHO05D005538 1.2e-16 90.9 76 59.2
Cc06_g15950 Coffea canephora HOM05D004474 ORTHO05D005538 1.6e-16 90.5 75 57.3
vmacro09118 Vaccinium macrocarpon HOM05D004474 ORTHO05D005538 1.6e-16 90.5 76 56.6
Aqoxy2G00079 Aquilegia oxysepala HOM05D004474 ORTHO05D005538 2.1e-16 90.1 79 58.2
Zm00001eb067150 Zea mays HOM05D004474 ORTHO05D005538 2.1e-16 90.1 79 54.4
TWI74G1538 Tripterygium wilfordii HOM05D004474 ORTHO05D005538 2.8e-16 89.7 63 65.1
Oeu034264.1 Olea europaea HOM05D004474 ORTHO05D005538 3.6e-16 89.4 81 55.6
HanXRQChr05g0132931 Helianthus annuus HOM05D004474 ORTHO05D005538 4.7e-16 89.0 73 57.5
Solyc10g080490.2 Solanum lycopersicum HOM05D004474 ORTHO05D005538 4.7e-16 89.0 76 57.9
Sopen10g031040 Solanum pennellii HOM05D004474 ORTHO05D005538 4.7e-16 89.0 76 57.9
CDE02G4436 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 1.1e-15 87.8 79 51.9
Lsat_1_v5_gn_2_74301 Lactuca sativa HOM05D004474 ORTHO05D005538 1.1e-15 87.8 73 57.5
Zm00001eb433050 Zea mays HOM05D004474 ORTHO05D005538 1.4e-15 87.4 79 53.2
ATR0605G151 Amborella trichopoda HOM05D004474 ORTHO05D005538 2.3e-15 86.7 75 54.7
BcaB08g34564 Brassica carinata HOM05D004474 ORTHO05D005538 2.3e-15 86.7 77 51.9
THA.LOC104819884 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 1.5e-14 84.0 76 50.0
Hund01181 Selenicereus undatus HOM05D009125 ORTHO05D000110 2.0e-14 83.6 76 53.9
Sp5g04710 Schrenkiella parvula HOM05D004474 ORTHO05D005538 9.8e-14 81.3 79 53.2
Manes.08G044700 Manihot esculenta HOM05D004474 ORTHO05D005538 4.9e-13 79.0 76 50.0
Mapoly0033s0063 Marchantia polymorpha HOM05D004474 ORTHO05D005538 1.4e-12 77.4 76 50.0
SEGI_00551 Sequoiadendron giganteum HOM05D004474 ORTHO05D005538 2.4e-12 76.6 75 42.7
PGSC0003DMG400028004 Solanum tuberosum HOM05D004474 ORTHO05D005538 3.5e-11 72.8 72 52.8
Mapoly0020s0060 Marchantia polymorpha HOM05D004474 ORTHO05D005538 2.3e-10 70.1 76 40.8
AagrBONN_evm.TU.Sc2ySwM_228.3345 Anthoceros agrestis HOM05D004474 ORTHO05D005538 2.5e-09 66.6 76 42.1
CDE05G2704 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 3.3e-09 66.2 50 62.0
SMO351G0571 Selaginella moellendorffii HOM05D004474 ORTHO05D005538 2.3e-07 60.1 79 34.2
CBR_g20312 Chara braunii HOM05D004474 ORTHO05D005538 2.0e-06 57.0 76 38.2


User provided reference genes

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