Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc23g0004110 Simmondsia chinensis HOM05D004886 ORTHO05D005868 2.3e-69 265.4 129 100.0
EL10Ac8g19580 Beta vulgaris HOM05D004886 ORTHO05D005868 5.3e-42 174.5 119 73.1
AUR62034033 Chenopodium quinoa HOM05D004886 ORTHO05D005868 2.7e-41 172.2 120 73.3
MELO3C022467.2 Cucumis melo HOM05D004886 ORTHO05D005868 1.7e-40 169.5 119 73.9
TAR375G0952 Trochodendron aralioides HOM05D004886 ORTHO05D005868 8.5e-40 167.2 119 72.3
Hund26556 Selenicereus undatus HOM05D004886 ORTHO05D005868 2.5e-39 165.6 119 69.7
CiPaw.14G014400 Carya illinoinensis HOM05D004886 ORTHO05D005868 4.2e-39 164.9 119 69.7
Hma1.2p1_0021F.1_g014430 Hydrangea macrophylla HOM05D004886 ORTHO05D005868 7.2e-39 164.1 119 67.2
Atru.chr5.18 Acer truncatum HOM05D004886 ORTHO05D005868 3.6e-38 161.8 119 68.9
AT3G60150 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 4.7e-38 161.4 119 68.9
Thhalv10006276m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 4.7e-38 161.4 119 68.1
Nn1g07677 Nelumbo nucifera HOM05D004886 ORTHO05D005868 4.7e-38 161.4 117 68.4
Aa31LG1G26120 Aethionema arabicum HOM05D004886 ORTHO05D005868 8.0e-38 160.6 119 68.9
Glyma.03G100700 Glycine max HOM05D004886 ORTHO05D005868 8.0e-38 160.6 119 68.9
Dinv44001 Davidia involucrata HOM05D004886 ORTHO05D005868 1.4e-37 159.8 119 68.1
Nn1g07674 Nelumbo nucifera HOM05D004886 ORTHO05D005868 1.4e-37 159.8 119 67.2
CiPaw.13G020500 Carya illinoinensis HOM05D004886 ORTHO05D005868 1.8e-37 159.5 119 65.5
QL04p024857 Quercus lobata HOM05D004886 ORTHO05D005868 1.8e-37 159.5 121 67.8
Actinidia05803 Actinidia chinensis HOM05D004886 ORTHO05D005868 3.0e-37 158.7 119 69.7
MD09G1285000 Malus domestica HOM05D004886 ORTHO05D005868 3.0e-37 158.7 114 66.7
Potri.014G179500 Populus trichocarpa HOM05D004886 ORTHO05D005868 3.0e-37 158.7 117 67.5
THA.LOC104817165 Tarenaya hassleriana HOM05D004886 ORTHO05D005868 3.0e-37 158.7 119 66.4
BcaB02g08829 Brassica carinata HOM05D004886 ORTHO05D005868 5.2e-37 157.9 119 68.9
BraA05t19444Z Brassica rapa HOM05D004886 ORTHO05D005868 8.8e-37 157.1 120 68.3
VMungo0331G0020 Vigna mungo HOM05D004886 ORTHO05D005868 8.8e-37 157.1 119 65.5
BcaC02g12300 Brassica carinata HOM05D004886 ORTHO05D005868 1.2e-36 156.8 119 68.1
C04p05420 Brassica napus HOM05D004886 ORTHO05D005868 1.2e-36 156.8 119 68.1
BolC4t22182H Brassica oleracea HOM05D004886 ORTHO05D005868 1.2e-36 156.8 119 68.1
Carub.0004s2709 Capsella rubella HOM05D004886 ORTHO05D005868 1.2e-36 156.8 119 67.2
Eucgr.D01136 Eucalyptus grandis HOM05D004886 ORTHO05D005868 1.2e-36 156.8 120 68.3
Sp4g26620 Schrenkiella parvula HOM05D004886 ORTHO05D005868 1.2e-36 156.8 119 67.2
Ah.09g232340 Amaranthus hybridus HOM05D004886 ORTHO05D005868 1.5e-36 156.4 128 64.1
MSTRG.28124 Avicennia marina HOM05D004886 ORTHO05D005868 1.5e-36 156.4 116 69.0
Ciclev10022551m.g Citrus clementina HOM05D004886 ORTHO05D005868 1.5e-36 156.4 119 67.2
Phvul.010G040200 Phaseolus vulgaris HOM05D004886 ORTHO05D005868 1.5e-36 156.4 119 65.5
A05p04680 Brassica napus HOM05D004886 ORTHO05D005868 2.0e-36 156.0 119 68.1
Lalb_Chr07g0194931 Lupinus albus HOM05D004886 ORTHO05D005868 2.0e-36 156.0 120 64.2
Nitab4.5_0001476g0110 Nicotiana tabacum HOM05D004886 ORTHO05D005868 2.0e-36 156.0 120 65.0
Aqoxy3G02476 Aquilegia oxysepala HOM05D004886 ORTHO05D005868 2.6e-36 155.6 126 64.3
AT2G44525 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 2.6e-36 155.6 119 66.4
CSS0044670 Camellia sinensis var. sinensis HOM05D004886 ORTHO05D005868 2.6e-36 155.6 122 66.4
CARHR139740 Cardamine hirsuta HOM05D004886 ORTHO05D005868 2.6e-36 155.6 119 67.2
RcHm_v2.0_Chr3g0487321 Rosa chinensis HOM05D004886 ORTHO05D005868 2.6e-36 155.6 112 67.0
Sed0007303 Sechium edule HOM05D004886 ORTHO05D005868 3.4e-36 155.2 119 67.2
Nitab4.5_0004264g0010 Nicotiana tabacum HOM05D004886 ORTHO05D005868 4.4e-36 154.8 120 64.2
TWI59G0909 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 4.4e-36 154.8 119 65.5
AL4G43550 Arabidopsis lyrata HOM05D004886 ORTHO05D005868 5.7e-36 154.5 119 65.5
Thhalv10001659m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 5.7e-36 154.5 119 66.4
Oeu002885.1 Olea europaea HOM05D004886 ORTHO05D005868 5.7e-36 154.5 120 66.7
Sp5g03060 Schrenkiella parvula HOM05D004886 ORTHO05D005868 5.7e-36 154.5 119 65.5
vmacro13553 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 5.7e-36 154.5 119 67.2
FAN28G1372 Fragaria x ananassa HOM05D004886 ORTHO05D005868 7.5e-36 154.1 112 66.1
Lsat_1_v5_gn_6_101400 Lactuca sativa HOM05D004886 ORTHO05D005868 7.5e-36 154.1 119 68.1
GSVIVG01018384001 Vitis vinifera HOM05D004886 ORTHO05D005868 7.5e-36 154.1 119 65.5
A04p01810 Brassica napus HOM05D004886 ORTHO05D005868 9.8e-36 153.7 119 67.2
BraA04t15905Z Brassica rapa HOM05D004886 ORTHO05D005868 9.8e-36 153.7 119 67.2
FAN23G1419 Fragaria x ananassa HOM05D004886 ORTHO05D005868 9.8e-36 153.7 112 65.2
FvH4_1g27010 Fragaria vesca HOM05D004886 ORTHO05D005868 1.7e-35 152.9 112 65.2
Rhsim07G0040800 Rhododendron simsii HOM05D004886 ORTHO05D005868 1.7e-35 152.9 119 66.4
Rhsim07G0041300 Rhododendron simsii HOM05D004886 ORTHO05D005868 1.7e-35 152.9 119 66.4
RhsimUnG0113600 Rhododendron simsii HOM05D004886 ORTHO05D005868 1.7e-35 152.9 119 66.4
COL.COLO4_20817 Corchorus olitorius HOM05D004886 ORTHO05D005868 2.2e-35 152.5 109 68.8
Carub.0005s2688 Capsella rubella HOM05D004886 ORTHO05D005868 2.8e-35 152.1 120 65.8
Sabra14G0137800 Salix brachista HOM05D004886 ORTHO05D005868 2.8e-35 152.1 114 64.9
Thecc.10G000600 Theobroma cacao HOM05D004886 ORTHO05D005868 2.8e-35 152.1 109 71.6
TPR.G17348 Trifolium pratense HOM05D004886 ORTHO05D005868 2.8e-35 152.1 122 63.1
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 3.7e-35 151.8 105 69.5
Duzib128G0726 Durio zibethinus HOM05D004886 ORTHO05D005868 3.7e-35 151.8 119 66.4
TWI14G0309 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 3.7e-35 151.8 119 62.2
Manes.05G060800 Manihot esculenta HOM05D004886 ORTHO05D005868 4.8e-35 151.4 119 64.7
CAN.G74.36 Capsicum annuum HOM05D004886 ORTHO05D005868 6.3e-35 151.0 118 64.4
Prupe.3G009000 Prunus persica HOM05D004886 ORTHO05D005868 6.3e-35 151.0 119 63.0
FAN26G2919 Fragaria x ananassa HOM05D004886 ORTHO05D005868 8.3e-35 150.6 112 65.2
Gorai.012G082000 Gossypium raimondii HOM05D004886 ORTHO05D005868 8.3e-35 150.6 119 65.5
Peaxi162Scf01124g00012 Petunia axillaris HOM05D004886 ORTHO05D005868 8.3e-35 150.6 119 62.2
Psat4g216480 Pisum sativum HOM05D004886 ORTHO05D005868 8.3e-35 150.6 119 64.7
Sed0018381 Sechium edule HOM05D004886 ORTHO05D005868 8.3e-35 150.6 121 68.6
CsaV3_6G004620 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.1e-34 150.2 148 58.1
CsaV3_6G021750 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.1e-34 150.2 148 58.1
CsaV3_6G037000 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.1e-34 150.2 148 58.1
Gohir.A05G333500 Gossypium hirsutum HOM05D004886 ORTHO05D005868 1.1e-34 150.2 119 64.7
BcaB02g08189 Brassica carinata HOM05D004886 ORTHO05D005868 1.4e-34 149.8 119 65.5
HanXRQChr05g0162431 Helianthus annuus HOM05D004886 ORTHO05D005868 1.4e-34 149.8 119 64.7
Sabra14G0139700 Salix brachista HOM05D004886 ORTHO05D005868 1.4e-34 149.8 114 64.0
SalBow4G2359 Salvia bowleyana HOM05D004886 ORTHO05D005868 1.4e-34 149.8 119 64.7
MBI04_g13864_MAGBIO Magnolia biondii HOM05D004886 ORTHO05D005868 1.8e-34 149.4 119 65.5
AUR62038597 Chenopodium quinoa HOM05D004886 ORTHO05D005868 4.1e-34 148.3 105 70.5
Cc02_g25880 Coffea canephora HOM05D004886 ORTHO05D005868 4.1e-34 148.3 119 62.2
ECA246G0884 Erigeron canadensis HOM05D004886 ORTHO05D005868 4.1e-34 148.3 119 64.7
Prupe.2G110500 Prunus persica HOM05D004886 ORTHO05D005868 4.1e-34 148.3 108 66.7
Gohir.D04G073000 Gossypium hirsutum HOM05D004886 ORTHO05D005868 5.4e-34 147.9 119 64.7
arahy.Tifrunner.gnm1.ann1.FT2T1Y Arachis hypogaea HOM05D004886 ORTHO05D005868 9.1e-34 147.1 111 63.1
Migut.N01703 Erythranthe guttata HOM05D004886 ORTHO05D005868 9.1e-34 147.1 119 63.9
unitig_85.g27219 Utricularia gibba HOM05D004886 ORTHO05D005868 9.1e-34 147.1 119 63.0
CANSAT21G0345 Cannabis sativa HOM05D004886 ORTHO05D005868 1.6e-33 146.4 122 63.1
MD07G1082600 Malus domestica HOM05D004886 ORTHO05D005868 1.6e-33 146.4 119 61.3
BcaC02g10116 Brassica carinata HOM05D004886 ORTHO05D005868 2.0e-33 146.0 109 67.9
BolC4t24818H Brassica oleracea HOM05D004886 ORTHO05D005868 2.0e-33 146.0 109 67.9
Dinv43568 Davidia involucrata HOM05D004886 ORTHO05D005868 2.0e-33 146.0 104 69.2
C04p32550 Brassica napus HOM05D004886 ORTHO05D005868 2.7e-33 145.6 109 67.0
FAN19G1058 Fragaria x ananassa HOM05D004886 ORTHO05D005868 3.5e-33 145.2 108 64.8
Medtr8g009670 Medicago truncatula HOM05D004886 ORTHO05D005868 3.5e-33 145.2 119 60.5
PGR044G2350 Punica granatum HOM05D004886 ORTHO05D005868 1.3e-32 143.3 80 81.2
PSO782G3769 Papaver somniferum HOM05D004886 ORTHO05D005868 1.7e-32 142.9 119 61.3
Aa31LG10G14300 Aethionema arabicum HOM05D004886 ORTHO05D005868 2.3e-32 142.5 116 62.1
PSO063G1771 Papaver somniferum HOM05D004886 ORTHO05D005868 2.3e-32 142.5 119 60.5
arahy.Tifrunner.gnm1.ann1.U68WY7 Arachis hypogaea HOM05D004886 ORTHO05D005868 2.9e-32 142.1 111 62.2
Sopen01g035180 Solanum pennellii HOM05D004886 ORTHO05D005868 2.9e-32 142.1 120 60.8
Solyc01g088350.4 Solanum lycopersicum HOM05D004886 ORTHO05D005868 6.5e-32 141.0 120 60.8
Lj3g0025670 Lotus japonicus HOM05D004886 ORTHO05D005868 8.6e-32 140.6 119 59.7
HPP92_003510 Vanilla planifolia HOM05D004886 ORTHO05D005868 2.5e-31 139.0 116 60.3
Haze_02935 Corylus avellana HOM05D004886 ORTHO05D005868 3.2e-31 138.7 104 65.4
Cpa.g.sc587.3 Carica papaya HOM05D004886 ORTHO05D005868 7.2e-31 137.5 115 60.9
CDE11G0764 Ceratophyllum demersum HOM05D004886 ORTHO05D005868 1.2e-30 136.7 109 60.6
DCAR_015764 Daucus carota HOM05D004886 ORTHO05D005868 2.8e-30 135.6 152 52.0
vmacro21096 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 4.7e-30 134.8 154 49.4
SGA_v2.0_scaffold77G25231 Striga asiatica HOM05D000012 ORTHO05D001060 1.4e-29 133.3 108 62.0
Zm00001eb390620 Zea mays HOM05D004886 ORTHO05D005868 2.0e-28 129.4 107 58.9
Zm00001eb024270 Zea mays HOM05D004886 ORTHO05D005868 2.6e-28 129.0 108 56.5
CsaV3_UNG176370 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.7e-27 126.3 137 53.3
Os10g0571100 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 2.2e-27 125.9 116 53.4
CsaV3_6G006530 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.4e-26 122.5 75 76.0
MD04G1140000 Malus domestica HOM05D004886 ORTHO05D005868 1.3e-24 116.7 109 57.8
CARHR170460 Cardamine hirsuta HOM05D004886 ORTHO05D005868 1.7e-24 116.3 89 66.3
SHI13674 Sapria himalayana HOM05D004886 ORTHO05D005868 1.5e-23 113.2 80 66.2
Lj9C547T8 Lonicera japonica HOM05D004886 ORTHO05D005868 4.3e-23 111.7 110 54.5
CsaV3_5G024660 Cucumis sativus L. HOM05D004886 ORTHO05D005868 9.5e-23 110.5 115 52.2
CsaV3_3G022410 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.0e-20 102.8 130 46.9
Actinidia30969 Actinidia chinensis HOM05D004886 ORTHO05D005868 6.4e-19 97.8 60 75.0
SEGI_24442 Sequoiadendron giganteum HOM05D004886 ORTHO05D005868 4.1e-18 95.1 76 55.3
CAN.G1480.6 Capsicum annuum HOM05D004886 ORTHO05D005868 1.7e-16 89.7 53 69.8
Mapoly0033s0133 Marchantia polymorpha HOM05D004886 ORTHO05D005868 1.2e-14 83.6 89 41.6
HPP92_003514 Vanilla planifolia HOM05D004886 ORTHO05D005868 2.8e-14 82.4 53 66.0
Pp3c12_4990 Physcomitrium patens HOM05D004886 ORTHO05D005868 6.2e-14 81.3 113 37.2
AagrBONN_evm.TU.Sc2ySwM_344.1568 Anthoceros agrestis HOM05D004886 ORTHO05D005868 1.1e-13 80.5 81 43.2
SGA_v2.0_scaffold95G28731 Striga asiatica HOM05D004886 ORTHO05D005868 5.8e-12 74.7 73 46.6
ClCG06G000740 Citrullus lanatus HOM05D004886 ORTHO05D005868 3.7e-11 72.0 119 42.9
SMO364G0857 Selaginella moellendorffii HOM05D004886 ORTHO05D005868 4.7e-06 55.1 48 45.8
Cre12.g496800 Chlamydomonas reinhardtii HOM05D004886 ORTHO05D005868 8.1e-06 54.3 53 39.6


User provided reference genes

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