Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc23g0004090 Simmondsia chinensis HOM05D002500 ORTHO05D002587 2.8e-102 375.2 176 100.0
Sc23g0003800 Simmondsia chinensis HOM05D002500 ORTHO05D002587 2.1e-28 129.8 66 90.9
Actinidia30971 Actinidia chinensis HOM05D002500 ORTHO05D002587 1.6e-12 77.0 77 50.6
Nitab4.5_0001290g0090 Nicotiana tabacum HOM05D002500 ORTHO05D002587 2.7e-12 76.3 76 48.7
GSVIVG01013826001 Vitis vinifera HOM05D002500 ORTHO05D002587 4.6e-12 75.5 79 50.6
Nitab4.5_0004725g0040 Nicotiana tabacum HOM05D002500 ORTHO05D002587 6.0e-12 75.1 76 47.4
Peaxi162Scf00062g00710 Petunia axillaris HOM05D002500 ORTHO05D002587 1.3e-11 73.9 76 47.4
CSS0028059 Camellia sinensis var. sinensis HOM05D002500 ORTHO05D002587 2.3e-11 73.2 77 50.6
CAN.G1565.2 Capsicum annuum HOM05D002500 ORTHO05D002587 3.0e-11 72.8 87 43.7
PGSC0003DMG400004648 Solanum tuberosum HOM05D002500 ORTHO05D002587 3.0e-11 72.8 75 49.3
CAN.G575.79 Capsicum annuum HOM05D002500 ORTHO05D002587 3.9e-11 72.4 76 48.7
Haze_02947 Corylus avellana HOM05D002500 ORTHO05D002587 5.1e-11 72.0 78 46.2
Peaxi162Scf00062g00615 Petunia axillaris HOM05D002500 ORTHO05D002587 5.1e-11 72.0 75 48.0
Cfa010988 Carpinus fangiana HOM05D002500 ORTHO05D002587 8.7e-11 71.2 78 46.2
QL04p024812 Quercus lobata HOM05D002500 ORTHO05D002587 1.1e-10 70.9 78 46.2
CiPaw.13G018800 Carya illinoinensis HOM05D002500 ORTHO05D002587 1.9e-10 70.1 81 46.9
Solyc12g099860.2 Solanum lycopersicum HOM05D002500 ORTHO05D002587 2.5e-10 69.7 75 46.7
THA.LOC104815297 Tarenaya hassleriana HOM05D002500 ORTHO05D002587 3.3e-10 69.3 76 44.7
Atru.chr7.1787 Acer truncatum HOM05D002500 ORTHO05D002587 5.6e-10 68.6 75 46.7
Hma1.2p1_0601F.1_g187310 Hydrangea macrophylla HOM05D002500 ORTHO05D002587 5.6e-10 68.6 78 46.2
CAN.G2177.11 Capsicum annuum HOM05D002500 ORTHO05D002587 7.4e-10 68.2 76 47.4
CAN.G575.136 Capsicum annuum HOM05D002500 ORTHO05D002587 9.6e-10 67.8 66 51.5
Dinv43561 Davidia involucrata HOM05D002500 ORTHO05D002587 1.3e-09 67.4 86 44.2
Sopen12g034490 Solanum pennellii HOM05D002500 ORTHO05D002587 1.3e-09 67.4 75 46.7
CSS0005053 Camellia sinensis var. sinensis HOM05D002500 ORTHO05D002587 2.1e-09 66.6 68 50.0
CSS0023099 Camellia sinensis var. sinensis HOM05D002500 ORTHO05D002587 2.1e-09 66.6 68 50.0
CSS0034484 Camellia sinensis var. sinensis HOM05D002500 ORTHO05D002587 2.1e-09 66.6 68 50.0
CSS0043259 Camellia sinensis var. sinensis HOM05D002500 ORTHO05D002587 2.1e-09 66.6 68 50.0
SalBow7G1585 Salvia bowleyana HOM05D002500 ORTHO05D002587 3.7e-09 65.9 77 42.9
MD02G1229500 Malus domestica HOM05D002500 ORTHO05D002587 4.8e-09 65.5 80 43.8
Oeu013053.1 Olea europaea HOM05D002500 ORTHO05D002587 6.2e-09 65.1 79 45.6
Cc02_g26080 Coffea canephora HOM05D002500 ORTHO05D002587 8.1e-09 64.7 80 47.5
Rhsim07G0042500 Rhododendron simsii HOM05D002500 ORTHO05D002587 1.1e-08 64.3 77 44.2
Lj9A546G12 Lonicera japonica HOM05D002500 ORTHO05D002587 1.4e-08 63.9 81 46.9
CARHR255920 Cardamine hirsuta HOM05D002500 ORTHO05D002587 1.8e-08 63.5 77 46.8
PGR042G0460 Punica granatum HOM05D002500 ORTHO05D002587 1.8e-08 63.5 78 39.7
Atru.chr5.12 Acer truncatum HOM05D002500 ORTHO05D002587 3.1e-08 62.8 76 44.7
Thecc.10G091000 Theobroma cacao HOM05D002500 ORTHO05D002587 3.1e-08 62.8 79 43.0
Thhalv10029474m.g Eutrema salsugineum HOM05D002500 ORTHO05D002587 4.0e-08 62.4 77 46.8
SGA_v2.0_scaffold95G28739 Striga asiatica HOM05D002500 ORTHO05D002587 4.0e-08 62.4 80 41.2
Potri.012G083100 Populus trichocarpa HOM05D002500 ORTHO05D002587 6.9e-08 61.6 70 44.3
Ah.04g156380 Amaranthus hybridus HOM05D002500 ORTHO05D002587 9.0e-08 61.2 78 43.6
Ah.04g156590 Amaranthus hybridus HOM05D002500 ORTHO05D002587 9.0e-08 61.2 78 43.6
Aqoxy3G02457 Aquilegia oxysepala HOM05D002500 ORTHO05D002587 9.0e-08 61.2 77 44.2
vmacro13558 Vaccinium macrocarpon HOM05D002500 ORTHO05D002587 9.0e-08 61.2 77 42.9
AUR62002077 Chenopodium quinoa HOM05D002500 ORTHO05D002587 1.2e-07 60.8 79 45.6
Migut.N01699 Erythranthe guttata HOM05D002500 ORTHO05D002587 1.2e-07 60.8 78 42.3
COL.COLO4_20833 Corchorus olitorius HOM05D002500 ORTHO05D002587 1.5e-07 60.5 80 41.2
Lalb_Chr20g0108191 Lupinus albus HOM05D002500 ORTHO05D002587 1.5e-07 60.5 69 46.4
Aa31LG9G11350 Aethionema arabicum HOM05D002500 ORTHO05D002587 2.6e-07 59.7 76 40.8
Sed0020597 Sechium edule HOM05D002500 ORTHO05D002587 2.6e-07 59.7 78 42.3
unitig_22.g6699 Utricularia gibba HOM05D001737 ORTHO05D001735 2.6e-07 59.7 75 42.7
AT4G10650 Arabidopsis thaliana HOM05D002500 ORTHO05D002587 3.4e-07 59.3 77 46.8
AUR62028194 Chenopodium quinoa HOM05D002500 ORTHO05D002587 3.4e-07 59.3 75 46.7
Eucgr.E01726 Eucalyptus grandis HOM05D002500 ORTHO05D002587 3.4e-07 59.3 79 38.0
TWI59G0576 Tripterygium wilfordii HOM05D002500 ORTHO05D002587 3.4e-07 59.3 78 39.7
TAR636G0004 Trochodendron aralioides HOM05D002500 ORTHO05D002587 3.4e-07 59.3 78 42.3
ATR0049G009 Amborella trichopoda HOM05D002500 ORTHO05D002587 4.5e-07 58.9 80 38.8
MSTRG.4975 Avicennia marina HOM05D002500 ORTHO05D002587 4.5e-07 58.9 79 45.6
Prupe.2G108800 Prunus persica HOM05D002500 ORTHO05D002587 4.5e-07 58.9 78 39.7
Carub.0006s2946 Capsella rubella HOM05D002500 ORTHO05D002587 5.8e-07 58.5 76 40.8
Gohir.A08G089400 Gossypium hirsutum HOM05D002500 ORTHO05D002587 5.8e-07 58.5 82 36.6
Gohir.D08G100600 Gossypium hirsutum HOM05D002500 ORTHO05D002587 5.8e-07 58.5 82 36.6
Gorai.004G108500 Gossypium raimondii HOM05D002500 ORTHO05D002587 5.8e-07 58.5 82 36.6
Manes.11G141400 Manihot esculenta HOM05D002500 ORTHO05D002587 5.8e-07 58.5 69 44.9
Nn6g33628 Nelumbo nucifera HOM05D002500 ORTHO05D002587 5.8e-07 58.5 78 37.2
BcaC04g21054 Brassica carinata HOM05D002500 ORTHO05D002587 7.6e-07 58.2 78 43.6
C09p36200 Brassica napus HOM05D002500 ORTHO05D002587 7.6e-07 58.2 78 43.6
BolC9t56458H Brassica oleracea HOM05D002500 ORTHO05D002587 7.6e-07 58.2 78 43.6
CANSAT54G0655 Cannabis sativa HOM05D002500 ORTHO05D002587 7.6e-07 58.2 80 42.5
AL6G44730 Arabidopsis lyrata HOM05D002500 ORTHO05D002587 1.3e-06 57.4 77 46.8
CSS0035208 Camellia sinensis var. sinensis HOM05D002500 ORTHO05D002587 1.7e-06 57.0 59 50.8
Hund09800 Selenicereus undatus HOM05D002500 ORTHO05D002587 1.7e-06 57.0 79 40.5
BcaB01g01496 Brassica carinata HOM05D002500 ORTHO05D002587 2.9e-06 56.2 76 39.5
CSS0016322 Camellia sinensis var. sinensis HOM05D002500 ORTHO05D002587 2.9e-06 56.2 56 51.8
CANSAT54G2161 Cannabis sativa HOM05D002500 ORTHO05D002587 2.9e-06 56.2 80 41.2
Cpa.g.sc136.65 Carica papaya HOM05D002500 ORTHO05D002587 2.9e-06 56.2 82 43.9
ClCG08G016480 Citrullus lanatus HOM05D002500 ORTHO05D002587 2.9e-06 56.2 76 38.2
BraA09t38419Z Brassica rapa HOM05D002500 ORTHO05D002587 4.9e-06 55.5 77 42.9
Ciclev10015589m.g Citrus clementina HOM05D002500 ORTHO05D002587 6.4e-06 55.1 79 40.5
A09p28580 Brassica napus HOM05D002500 ORTHO05D002587 8.4e-06 54.7 77 41.6
COL.COLO4_08794 Corchorus olitorius HOM05D012193 ORTHO05D002587 8.4e-06 54.7 71 40.8


User provided reference genes

Program Settings