Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc23g0003950 Simmondsia chinensis HOM05D006948 ORTHO05D008703 8.9e-44 180.3 99 100.0
Hund17076 Selenicereus undatus HOM05D006948 ORTHO05D008703 2.1e-13 79.3 54 74.1
Solyc01g090500.4 Solanum lycopersicum HOM05D006948 ORTHO05D008703 6.2e-13 77.8 56 69.6
CSS0003978 Camellia sinensis var. sinensis HOM05D006948 ORTHO05D008703 1.4e-12 76.6 54 70.4
Sopen01g036290 Solanum pennellii HOM05D006948 ORTHO05D008703 1.8e-12 76.3 56 69.6
PGSC0003DMG401026039 Solanum tuberosum HOM05D006948 ORTHO05D008703 2.4e-12 75.9 54 68.5
HanXRQChr06g0168761 Helianthus annuus HOM05D006948 ORTHO05D008703 6.9e-12 74.3 51 72.5
THA.LOC104817199 Tarenaya hassleriana HOM05D006948 ORTHO05D008703 2.0e-11 72.8 56 66.1
Actinidia12660 Actinidia chinensis HOM05D006948 ORTHO05D008703 2.6e-11 72.4 54 64.8
SHI13603 Sapria himalayana HOM05D006948 ORTHO05D008703 2.6e-11 72.4 83 42.2
Lsat_1_v5_gn_7_10441 Lactuca sativa HOM05D006948 ORTHO05D008703 3.4e-11 72.0 56 64.3
ECA236G1236 Erigeron canadensis HOM05D006948 ORTHO05D008703 5.8e-11 71.2 51 68.6
Nitab4.5_0001818g0020 Nicotiana tabacum HOM05D006948 ORTHO05D008703 5.8e-11 71.2 56 64.3
Cc00_g20460 Coffea canephora HOM05D006948 ORTHO05D008703 7.6e-11 70.9 54 64.8
Sabra14G0040200 Salix brachista HOM05D006948 ORTHO05D008703 7.6e-11 70.9 52 67.3
Nitab4.5_0002874g0090 Nicotiana tabacum HOM05D006948 ORTHO05D008703 1.3e-10 70.1 56 62.5
Peaxi162Scf00392g00125 Petunia axillaris HOM05D006948 ORTHO05D008703 1.3e-10 70.1 56 64.3
MSTRG.28159 Avicennia marina HOM05D006948 ORTHO05D008703 1.7e-10 69.7 56 64.3
CiPaw.13G028600 Carya illinoinensis HOM05D006948 ORTHO05D008703 1.7e-10 69.7 52 67.3
Manes.05G052600 Manihot esculenta HOM05D006948 ORTHO05D008703 2.2e-10 69.3 51 66.7
Gohir.D08G040600 Gossypium hirsutum HOM05D006948 ORTHO05D008703 2.9e-10 68.9 76 51.3
arahy.Tifrunner.gnm1.ann1.96FU63 Arachis hypogaea HOM05D006948 ORTHO05D008703 3.8e-10 68.6 56 64.3
arahy.Tifrunner.gnm1.ann1.9NP6XU Arachis hypogaea HOM05D006948 ORTHO05D008703 3.8e-10 68.6 56 64.3
Rhsim01G0137500 Rhododendron simsii HOM05D006948 ORTHO05D008703 4.9e-10 68.2 54 61.1
TAR629G0288 Trochodendron aralioides HOM05D006948 ORTHO05D000005 4.9e-10 68.2 53 64.2
ClCG05G000390 Citrullus lanatus HOM05D006948 ORTHO05D008703 6.4e-10 67.8 57 61.4
Potri.014G054300 Populus trichocarpa HOM05D006948 ORTHO05D008703 6.4e-10 67.8 47 70.2
QL04p032282 Quercus lobata HOM05D006948 ORTHO05D008703 6.4e-10 67.8 54 63.0
Gorai.004G039500 Gossypium raimondii HOM05D006948 ORTHO05D008703 8.4e-10 67.4 76 50.0
Oeu035671.1 Olea europaea HOM05D006948 ORTHO05D008703 8.4e-10 67.4 54 61.1
PSO675G6563 Papaver somniferum HOM05D006948 ORTHO05D008703 1.1e-09 67.0 54 57.4
Gohir.A08G029800 Gossypium hirsutum HOM05D006948 ORTHO05D008703 1.9e-09 66.2 76 48.7
QL04p032169 Quercus lobata HOM05D006948 ORTHO05D008703 1.9e-09 66.2 54 59.3
QL04p033225 Quercus lobata HOM05D006948 ORTHO05D008703 1.9e-09 66.2 54 59.3
A09p52730 Brassica napus HOM05D006948 ORTHO05D008703 2.4e-09 65.9 63 50.8
Thecc.01G389700 Theobroma cacao HOM05D006948 ORTHO05D008703 2.4e-09 65.9 54 61.1
BcaC07g40567 Brassica carinata HOM05D006948 ORTHO05D008703 3.2e-09 65.5 55 58.2
C08p35470 Brassica napus HOM05D006948 ORTHO05D008703 3.2e-09 65.5 55 58.2
BolC8t51138H Brassica oleracea HOM05D006948 ORTHO05D008703 3.2e-09 65.5 55 58.2
Duzib138G1111 Durio zibethinus HOM05D006948 ORTHO05D008703 3.2e-09 65.5 76 47.4
QL04p031942 Quercus lobata HOM05D006948 ORTHO05D008703 3.2e-09 65.5 54 59.3
Cpa.g.sc5.223 Carica papaya HOM05D006948 ORTHO05D008703 4.2e-09 65.1 54 61.1
AUR62018049 Chenopodium quinoa HOM05D006948 ORTHO05D008703 4.2e-09 65.1 54 59.3
Sed0014312 Sechium edule HOM05D006948 ORTHO05D008703 4.2e-09 65.1 56 62.5
PSO732G0264 Papaver somniferum HOM05D006948 ORTHO05D008703 5.5e-09 64.7 54 55.6
QL04p033368 Quercus lobata HOM05D006948 ORTHO05D008703 5.5e-09 64.7 54 57.4
Aa31LG10G14620 Aethionema arabicum HOM05D006948 ORTHO05D008703 7.1e-09 64.3 55 58.2
SGA_v2.0_scaffold43G16525 Striga asiatica HOM05D006948 ORTHO05D008703 7.1e-09 64.3 54 61.1
Thecc.01G390200 Theobroma cacao HOM05D006948 ORTHO05D008703 7.1e-09 64.3 76 46.1
unitig_0.g2760 Utricularia gibba HOM05D006948 ORTHO05D008703 7.1e-09 64.3 48 70.8
AT3G60480 Arabidopsis thaliana HOM05D006948 ORTHO05D008703 9.3e-09 63.9 55 58.2
AUR62023432 Chenopodium quinoa HOM05D006948 ORTHO05D008703 9.3e-09 63.9 54 59.3
CsaV3_3G007550 Cucumis sativus L. HOM05D006948 ORTHO05D008703 9.3e-09 63.9 52 63.5
Nn1g00906 Nelumbo nucifera HOM05D006948 ORTHO05D008703 9.3e-09 63.9 54 63.0
Sp5g02740 Schrenkiella parvula HOM05D006948 ORTHO05D008703 9.3e-09 63.9 55 58.2
AL5G42750 Arabidopsis lyrata HOM05D006948 ORTHO05D008703 1.2e-08 63.5 55 56.4
Carub.0005s2721 Capsella rubella HOM05D006948 ORTHO05D008703 1.2e-08 63.5 55 56.4
AUR62013722 Chenopodium quinoa HOM05D006948 ORTHO05D008703 1.2e-08 63.5 52 59.6
Ciclev10023020m.g Citrus clementina HOM05D006948 ORTHO05D008703 1.2e-08 63.5 54 61.1
CARHR170860 Cardamine hirsuta HOM05D006948 ORTHO05D008703 1.6e-08 63.2 55 56.4
BcaC07g40569 Brassica carinata HOM05D006948 ORTHO05D008703 2.1e-08 62.8 55 56.4
BcaC07g42775 Brassica carinata HOM05D006948 ORTHO05D008703 2.1e-08 62.8 55 56.4
MELO3C005977.2 Cucumis melo HOM05D006948 ORTHO05D008703 2.1e-08 62.8 51 62.7
Glyma.01G074400 Glycine max HOM05D006948 ORTHO05D008703 2.1e-08 62.8 54 61.1
PGR042G1623 Punica granatum HOM05D006948 ORTHO05D008703 2.7e-08 62.4 55 58.2
VMungo1383G1377 Vigna mungo HOM05D006948 ORTHO05D008703 2.7e-08 62.4 52 61.5
Hma1.2p1_1740F.1_g300040 Hydrangea macrophylla HOM05D006948 ORTHO05D008703 3.5e-08 62.0 52 65.4
Haze_02785 Corylus avellana HOM05D006948 ORTHO05D008703 4.6e-08 61.6 52 63.5
EL10Ac1g00789 Beta vulgaris HOM05D006948 ORTHO05D008703 6.0e-08 61.2 54 59.3
Cfa012992 Carpinus fangiana HOM05D006948 ORTHO05D008703 6.0e-08 61.2 51 64.7
Haze_02790 Corylus avellana HOM05D006948 ORTHO05D008703 6.0e-08 61.2 52 63.5
Medtr7g446140 Medicago truncatula HOM05D006948 ORTHO05D008703 7.9e-08 60.8 54 57.4
Dinv43640 Davidia involucrata HOM05D006948 ORTHO05D008703 1.0e-07 60.5 54 63.0
Lalb_Chr19g0126621 Lupinus albus HOM05D006948 ORTHO05D008703 1.0e-07 60.5 54 59.3
TWI59G0066 Tripterygium wilfordii HOM05D006948 ORTHO05D008703 1.3e-07 60.1 52 61.5
Ca_27396_v3 Cicer arietinum L. HOM05D006948 ORTHO05D008703 1.8e-07 59.7 54 57.4
TPR.G39099 Trifolium pratense HOM05D006948 ORTHO05D008703 1.8e-07 59.7 54 55.6
COL.COLO4_12436 Corchorus olitorius HOM05D006948 ORTHO05D008703 2.3e-07 59.3 54 53.7
SalBow5G2465 Salvia bowleyana HOM05D006948 ORTHO05D008703 3.0e-07 58.9 57 56.1
SalBow5G5528 Salvia bowleyana HOM05D006948 ORTHO05D008703 3.0e-07 58.9 57 56.1
Migut.O00539 Erythranthe guttata HOM05D006948 ORTHO05D008703 5.1e-07 58.2 56 53.6
Migut.N01755 Erythranthe guttata HOM05D006948 ORTHO05D008703 6.7e-07 57.8 56 53.6
Atru.chr4.2323 Acer truncatum HOM05D006948 ORTHO05D008703 3.3e-06 55.5 51 56.9
ATR0057G003 Amborella trichopoda HOM05D006948 ORTHO05D008703 3.3e-06 55.5 56 58.9
CDE11G0572 Ceratophyllum demersum HOM05D006948 ORTHO05D008703 3.3e-06 55.5 54 55.6
Psat3g154680 Pisum sativum HOM05D006948 ORTHO05D008703 4.3e-06 55.1 52 51.9
Phvul.008G140300 Phaseolus vulgaris HOM05D006948 ORTHO05D008703 5.6e-06 54.7 52 55.8
CDE02G3860 Ceratophyllum demersum HOM05D006948 ORTHO05D008703 7.4e-06 54.3 54 53.7
Medtr7g446470 Medicago truncatula HOM05D006948 ORTHO05D008703 7.4e-06 54.3 48 56.2


User provided reference genes

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