Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc23g0003940 Simmondsia chinensis HOM05D008164 ORTHO05D010222 3.4e-69 265.0 148 100.0
Cfa004447 Carpinus fangiana HOM05D008164 ORTHO05D010222 1.0e-20 104.0 168 50.0
Haze_09987 Corylus avellana HOM05D008164 ORTHO05D010222 3.9e-20 102.1 167 48.5
CiPaw.05G001800 Carya illinoinensis HOM05D008164 ORTHO05D010222 6.6e-20 101.3 165 40.6
Rhsim11G0118100 Rhododendron simsii HOM05D008164 ORTHO05D010222 6.2e-18 94.7 172 48.3
TAR628G0422 Trochodendron aralioides HOM05D008164 ORTHO05D010222 6.2e-18 94.7 162 38.3
Thecc.06G017700 Theobroma cacao HOM05D008164 ORTHO05D010222 1.4e-17 93.6 172 38.4
Dinv29630 Davidia involucrata HOM05D000112 ORTHO05D000564 1.8e-17 93.2 162 51.9
QL02p103286 Quercus lobata HOM05D008164 ORTHO05D010222 1.8e-17 93.2 172 47.7
Sopen01g045480 Solanum pennellii HOM05D008164 ORTHO05D010222 1.2e-16 90.5 166 46.4
Solyc01g103070.2 Solanum lycopersicum HOM05D008164 ORTHO05D010222 1.5e-16 90.1 166 46.4
Cc02_g23560 Coffea canephora HOM05D008164 ORTHO05D010222 3.4e-16 89.0 174 44.8
Gohir.D05G110300 Gossypium hirsutum HOM05D008164 ORTHO05D010222 3.4e-16 89.0 166 46.4
Gorai.009G114500 Gossypium raimondii HOM05D008164 ORTHO05D010222 3.4e-16 89.0 166 46.4
Gohir.A05G110000 Gossypium hirsutum HOM05D008164 ORTHO05D010222 4.4e-16 88.6 159 37.1
Duzib235G0793 Durio zibethinus HOM05D008164 ORTHO05D010222 5.8e-16 88.2 176 36.4
Ciclev10002734m.g Citrus clementina HOM05D008164 ORTHO05D010222 1.9e-14 83.2 170 36.5
Prupe.1G585100 Prunus persica HOM05D008164 ORTHO05D010222 1.9e-14 83.2 180 47.8
DCAR_003281 Daucus carota HOM05D008164 ORTHO05D010222 3.2e-14 82.4 174 36.8
Potri.003G001200 Populus trichocarpa HOM05D008164 ORTHO05D010222 3.2e-14 82.4 163 50.3
Oeu043611.1 Olea europaea HOM05D008164 ORTHO05D010222 7.1e-14 81.3 161 52.2
Manes.10G108200 Manihot esculenta HOM05D008164 ORTHO05D010222 2.7e-13 79.3 126 39.7
TWI14G0748 Tripterygium wilfordii HOM05D008164 ORTHO05D010222 4.6e-13 78.6 155 48.4
Atru.chr6.245 Acer truncatum HOM05D008164 ORTHO05D010222 6.0e-13 78.2 179 35.2
PGR142G0304 Punica granatum HOM05D008164 ORTHO05D010222 6.0e-13 78.2 99 46.5
TAR376G0048 Trochodendron aralioides HOM05D008164 ORTHO05D010222 1.3e-12 77.0 147 43.5
PGSC0003DMG400038752 Solanum tuberosum HOM05D008164 ORTHO05D010222 1.7e-12 76.6 158 45.6
Migut.N00863 Erythranthe guttata HOM05D008164 ORTHO05D010222 3.0e-12 75.9 153 37.9
Lj5P282T61 Lonicera japonica HOM05D008164 ORTHO05D010222 3.9e-12 75.5 183 44.8
Nitab4.5_0004668g0050 Nicotiana tabacum HOM05D008164 ORTHO05D010222 6.6e-12 74.7 153 48.4
Peaxi162Scf00011g00188 Petunia axillaris HOM05D008164 ORTHO05D010222 7.3e-11 71.2 162 44.4
ATR0580G429 Amborella trichopoda HOM05D008164 ORTHO05D010222 1.6e-10 70.1 114 40.4
Sp7g22250 Schrenkiella parvula HOM05D008164 ORTHO05D010222 2.8e-10 69.3 162 32.7
Cpa.g.sc173.36 Carica papaya HOM05D008164 ORTHO05D010222 4.7e-10 68.6 143 37.1
Cpa.g.sc173.26 Carica papaya HOM05D008164 ORTHO05D010222 6.2e-10 68.2 142 37.3
Nitab4.5_0008306g0040 Nicotiana tabacum HOM05D008164 ORTHO05D010222 1.8e-09 66.6 147 47.6
Cpa.g.sc173.30 Carica papaya HOM05D008164 ORTHO05D010222 4.0e-09 65.5 145 36.6
BcaC09g50889 Brassica carinata HOM05D008164 ORTHO05D010222 5.2e-09 65.1 170 29.4
C01p19540 Brassica napus HOM05D008164 ORTHO05D010222 5.2e-09 65.1 170 29.4
PSO017G5192 Papaver somniferum HOM05D008164 ORTHO05D010222 5.2e-09 65.1 162 31.5
BcaNung01134 Brassica carinata HOM05D008164 ORTHO05D010222 1.2e-08 63.9 166 29.5
A01p15590 Brassica napus HOM05D008164 ORTHO05D010222 1.2e-08 63.9 170 29.4
BraA01t01499Z Brassica rapa HOM05D008164 ORTHO05D010222 1.2e-08 63.9 170 29.4
COL.COLO4_31129 Corchorus olitorius HOM05D000112 ORTHO05D000564 1.2e-08 63.9 144 47.2
BolC1t01882H Brassica oleracea HOM05D008164 ORTHO05D010222 1.5e-08 63.5 170 29.4
Aqoxy7G02312 Aquilegia oxysepala HOM05D008164 ORTHO05D010222 2.0e-08 63.2 174 36.2
Manes.07G030300 Manihot esculenta HOM05D008164 ORTHO05D010222 3.4e-08 62.4 136 40.4
FAN04G0245 Fragaria x ananassa HOM05D008164 ORTHO05D010222 9.9e-08 60.8 167 48.5
FvH4_5g28060 Fragaria vesca HOM05D008164 ORTHO05D010222 2.2e-07 59.7 170 45.3
CARHR231690 Cardamine hirsuta HOM05D008164 ORTHO05D010222 2.9e-07 59.3 152 31.6
AL7G28990 Arabidopsis lyrata HOM05D008164 ORTHO05D010222 3.8e-07 58.9 161 32.9
SGA_v2.0_scaffold8G04458 Striga asiatica HOM05D008164 ORTHO05D010222 4.9e-07 58.5 170 40.0
Lsat_1_v5_gn_9_121861 Lactuca sativa HOM05D008164 ORTHO05D010222 8.4e-07 57.8 177 36.2
BcaC09g50645 Brassica carinata HOM05D008164 ORTHO05D010222 1.4e-06 57.0 169 30.2
C01p22560 Brassica napus HOM05D008164 ORTHO05D010222 1.4e-06 57.0 169 30.2
BolC1t02189H Brassica oleracea HOM05D008164 ORTHO05D010222 1.4e-06 57.0 169 30.2
Carub.0007s1679 Capsella rubella HOM05D008164 ORTHO05D010222 4.2e-06 55.5 187 28.9
AT4G24265 Arabidopsis thaliana HOM05D008164 ORTHO05D010222 5.4e-06 55.1 165 31.5
FAN18G4000 Fragaria x ananassa HOM05D008164 ORTHO05D010222 5.4e-06 55.1 174 43.7
Thhalv10026492m.g Eutrema salsugineum HOM05D008164 ORTHO05D010222 9.2e-06 54.3 167 29.9


User provided reference genes

Program Settings