Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc23g0003120 Simmondsia chinensis HOM05D005332 ORTHO05D006861 2.2e-131 472.2 233 100.0
Ah.05g176380 Amaranthus hybridus HOM05D005332 ORTHO05D006861 1.0e-99 367.1 232 76.3
Hund27309 Selenicereus undatus HOM05D005332 ORTHO05D006861 3.0e-99 365.5 231 77.1
Actinidia09995 Actinidia chinensis HOM05D000602 ORTHO05D002573 2.8e-97 359.0 232 75.0
Cpa.g.sc704.3 Carica papaya HOM05D005332 ORTHO05D006861 8.0e-97 357.5 233 73.4
Eucgr.E00187 Eucalyptus grandis HOM05D005332 ORTHO05D006861 4.0e-96 355.1 230 73.0
EL10Ac1g00521 Beta vulgaris HOM05D005332 ORTHO05D006861 6.8e-96 354.4 229 75.5
Haze_15198 Corylus avellana HOM05D005332 ORTHO05D006861 8.9e-96 354.0 230 74.3
Manes.01G260300 Manihot esculenta HOM05D005332 ORTHO05D006861 2.0e-95 352.8 231 72.7
COL.COLO4_12599 Corchorus olitorius HOM05D005332 ORTHO05D006861 5.8e-95 351.3 231 74.0
GSVIVG01026821001 Vitis vinifera HOM05D005332 ORTHO05D006861 7.5e-95 350.9 230 73.5
TAR374G0257 Trochodendron aralioides HOM05D005332 ORTHO05D006861 1.1e-93 347.1 230 73.0
TWI59G1218 Tripterygium wilfordii HOM05D005332 ORTHO05D006861 3.2e-93 345.5 228 72.4
vmacro13319 Vaccinium macrocarpon HOM05D005332 ORTHO05D006861 3.2e-93 345.5 232 72.8
Rhsim07G0018900 Rhododendron simsii HOM05D005332 ORTHO05D006861 1.6e-92 343.2 229 72.5
Solyc01g094190.3 Solanum lycopersicum HOM05D005332 ORTHO05D006861 2.0e-92 342.8 234 71.4
Lj9A579T30 Lonicera japonica HOM05D005332 ORTHO05D006861 3.5e-92 342.0 233 73.0
MD07G1128800 Malus domestica HOM05D005332 ORTHO05D006861 6.0e-92 341.3 235 72.8
Nitab4.5_0001251g0070 Nicotiana tabacum HOM05D005332 ORTHO05D006861 6.0e-92 341.3 233 70.8
Thecc.01G365300 Theobroma cacao HOM05D005332 ORTHO05D006861 6.0e-92 341.3 230 72.2
Sopen01g037990 Solanum pennellii HOM05D005332 ORTHO05D006861 1.0e-91 340.5 234 70.9
CSS0028869 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 1.3e-91 340.1 238 71.0
CSS0045846 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 1.3e-91 340.1 238 71.0
Prupe.2G159800 Prunus persica HOM05D005332 ORTHO05D006861 1.3e-91 340.1 232 73.7
AUR62004310 Chenopodium quinoa HOM05D005332 ORTHO05D006861 2.3e-91 339.3 232 69.0
RcHm_v2.0_Chr1g0353111 Rosa chinensis HOM05D005332 ORTHO05D006861 2.3e-91 339.3 232 72.4
Nn6g33539 Nelumbo nucifera HOM05D005332 ORTHO05D006861 5.0e-91 338.2 229 71.2
QL08p049836 Quercus lobata HOM05D005332 ORTHO05D006861 1.1e-90 337.0 266 66.2
SGA_v2.0_scaffold43G16446 Striga asiatica HOM05D005332 ORTHO05D006861 2.5e-90 335.9 233 72.1
Atru.chr5.441 Acer truncatum HOM05D005332 ORTHO05D006861 3.3e-90 335.5 233 70.8
Cc02_g37460 Coffea canephora HOM05D005332 ORTHO05D006861 3.3e-90 335.5 230 70.9
CANSAT56G3547 Cannabis sativa HOM05D005332 ORTHO05D006861 4.3e-90 335.1 229 71.6
Duzib138G1089 Durio zibethinus HOM05D005332 ORTHO05D006861 4.3e-90 335.1 232 70.7
FAN10G1762 Fragaria x ananassa HOM05D005332 ORTHO05D006861 7.3e-90 334.3 232 71.1
PGSC0003DMG402000019 Solanum tuberosum HOM05D005332 ORTHO05D006861 7.3e-90 334.3 234 70.1
FAN06G0948 Fragaria x ananassa HOM05D005332 ORTHO05D006861 9.5e-90 334.0 232 71.1
FAN06G1647 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.2e-89 333.6 232 70.7
Lalb_Chr04g0256681 Lupinus albus HOM05D005332 ORTHO05D006861 1.2e-89 333.6 233 69.1
FAN01G1890 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.6e-89 333.2 232 71.1
Gorai.007G097000 Gossypium raimondii HOM05D005332 ORTHO05D006861 1.6e-89 333.2 232 71.1
MSTRG.28212 Avicennia marina HOM05D005332 ORTHO05D006861 2.1e-89 332.8 233 69.5
Gohir.D11G091000 Gossypium hirsutum HOM05D005332 ORTHO05D006861 2.1e-89 332.8 232 71.1
Sabra14G0057900 Salix brachista HOM05D005332 ORTHO05D006861 3.6e-89 332.0 234 70.1
FAN03G0731 Fragaria x ananassa HOM05D005332 ORTHO05D006861 4.7e-89 331.6 232 71.1
Ciclev10021196m.g Citrus clementina HOM05D005332 ORTHO05D006861 6.2e-89 331.3 233 71.2
Oeu014686.1 Olea europaea HOM05D005332 ORTHO05D006861 1.1e-88 330.5 232 69.8
FvH4_7g13560 Fragaria vesca HOM05D005332 ORTHO05D006861 1.4e-88 330.1 232 71.1
Gohir.A11G082100 Gossypium hirsutum HOM05D005332 ORTHO05D006861 1.4e-88 330.1 232 71.1
Sed0022570 Sechium edule HOM05D005332 ORTHO05D006861 1.4e-88 330.1 229 67.7
MBI18_g09781_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 2.3e-88 329.3 223 70.4
Peaxi162Scf00397g00521 Petunia axillaris HOM05D005332 ORTHO05D006861 4.0e-88 328.6 231 69.3
CsaV3_6G005760 Cucumis sativus L. HOM05D005332 ORTHO05D006861 6.8e-88 327.8 230 66.5
TPR.G9802 Trifolium pratense HOM05D005332 ORTHO05D006861 8.9e-88 327.4 236 67.4
Migut.O00555 Erythranthe guttata HOM05D005332 ORTHO05D006861 1.5e-87 326.6 233 70.8
SalBow5G4657 Salvia bowleyana HOM05D005332 ORTHO05D006861 1.5e-87 326.6 229 69.9
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 2.0e-87 326.2 237 67.5
CAN.G78.17 Capsicum annuum HOM05D005332 ORTHO05D006861 2.6e-87 325.9 234 68.8
Lsat_1_v5_gn_3_136741 Lactuca sativa HOM05D005332 ORTHO05D006861 3.4e-87 325.5 229 68.1
Potri.014G079700 Populus trichocarpa HOM05D005332 ORTHO05D006861 3.4e-87 325.5 234 68.8
PGR042G0753 Punica granatum HOM05D005332 ORTHO05D006861 3.4e-87 325.5 228 69.7
Migut.N01426 Erythranthe guttata HOM05D005332 ORTHO05D006861 4.4e-87 325.1 233 69.5
MELO3C022535.2 Cucumis melo HOM05D005332 ORTHO05D006861 5.8e-87 324.7 230 65.7
Lj3g0013979 Lotus japonicus HOM05D005332 ORTHO05D006861 5.8e-87 324.7 235 66.4
ClCG06G000030 Citrullus lanatus HOM05D005332 ORTHO05D006861 7.5e-87 324.3 230 66.5
Glyma.07G075200 Glycine max HOM05D005332 ORTHO05D006861 9.8e-87 323.9 236 67.4
RcHm_v2.0_Chr0c39g0503341 Rosa chinensis HOM05D005332 ORTHO05D006861 9.8e-87 323.9 234 69.7
Thhalv10028798m.g Eutrema salsugineum HOM05D005332 ORTHO05D006861 2.2e-86 322.8 233 67.0
Medtr8g032270 Medicago truncatula HOM05D005332 ORTHO05D006861 2.9e-86 322.4 231 69.3
AUR62022761 Chenopodium quinoa HOM05D005332 ORTHO05D006861 3.7e-86 322.0 233 67.4
Phvul.010G093900 Phaseolus vulgaris HOM05D005332 ORTHO05D006861 3.7e-86 322.0 237 66.7
arahy.Tifrunner.gnm1.ann1.CH4HI7 Arachis hypogaea HOM05D005332 ORTHO05D006861 1.1e-85 320.5 240 67.1
AL6G52870 Arabidopsis lyrata HOM05D005332 ORTHO05D006861 3.2e-85 318.9 233 68.2
THA.LOC104801453 Tarenaya hassleriana HOM05D005332 ORTHO05D006861 3.2e-85 318.9 232 67.7
Aqoxy5G03955 Aquilegia oxysepala HOM05D005332 ORTHO05D006861 4.1e-85 318.5 232 68.1
ATR0680G024 Amborella trichopoda HOM05D005332 ORTHO05D006861 5.4e-85 318.2 232 67.7
arahy.Tifrunner.gnm1.ann1.W4LYDN Arachis hypogaea HOM05D005332 ORTHO05D006861 5.4e-85 318.2 240 66.7
HPP92_025722 Vanilla planifolia HOM05D005332 ORTHO05D006861 5.4e-85 318.2 231 68.0
Sp6g00600 Schrenkiella parvula HOM05D005332 ORTHO05D006861 1.7e-83 313.2 233 66.5
C02p38040 Brassica napus HOM05D005332 ORTHO05D006861 3.0e-83 312.4 233 67.0
PSO782G1310 Papaver somniferum HOM05D005332 ORTHO05D006861 3.9e-83 312.0 232 64.7
ECA240G0419 Erigeron canadensis HOM05D005332 ORTHO05D006861 6.6e-83 311.2 232 64.7
Nitab4.5_0006669g0040 Nicotiana tabacum HOM05D005332 ORTHO05D006861 1.1e-82 310.5 288 56.2
AT4G00560 Arabidopsis thaliana HOM05D005332 ORTHO05D006861 1.5e-82 310.1 233 66.5
BcaC03g16043 Brassica carinata HOM05D005332 ORTHO05D006861 1.5e-82 310.1 233 66.5
A02p24170 Brassica napus HOM05D005332 ORTHO05D006861 1.9e-82 309.7 233 67.0
Os02g0826200 Oryza sativa ssp. japonica HOM05D005332 ORTHO05D006861 2.5e-82 309.3 231 65.8
CDE09G0818 Ceratophyllum demersum HOM05D005332 ORTHO05D006861 3.3e-82 308.9 232 62.9
BraA02t07408Z Brassica rapa HOM05D005332 ORTHO05D006861 4.3e-82 308.5 233 66.5
Carub.0006s3668 Capsella rubella HOM05D005332 ORTHO05D006861 4.3e-82 308.5 231 66.7
Ca_18844_v3 Cicer arietinum L. HOM05D005332 ORTHO05D006861 7.3e-82 307.8 231 66.7
Aa31LG5G430 Aethionema arabicum HOM05D005332 ORTHO05D006861 1.6e-81 306.6 232 65.1
PSO478G0627 Papaver somniferum HOM05D005332 ORTHO05D006861 6.2e-81 304.7 251 61.0
Zm00001eb259270 Zea mays HOM05D005332 ORTHO05D006861 8.1e-81 304.3 228 66.2
BolC2t09820H Brassica oleracea HOM05D005332 ORTHO05D006861 1.4e-80 303.5 245 63.7
BcaB01g02194 Brassica carinata HOM05D005332 ORTHO05D006861 3.1e-80 302.4 234 66.2
HanXRQChr03g0093511 Helianthus annuus HOM05D005332 ORTHO05D006861 8.9e-80 300.8 228 65.8
DCAR_006914 Daucus carota HOM05D005332 ORTHO05D006861 5.8e-79 298.1 229 65.1
SalBow5G2488 Salvia bowleyana HOM05D005332 ORTHO05D006861 1.1e-77 293.9 198 71.7
SEGI_02313 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 1.6e-76 290.0 234 61.5
RcHm_v2.0_Chr1g0353281 Rosa chinensis HOM05D005332 ORTHO05D006861 2.1e-73 279.6 178 74.7
Pp3c6_20490 Physcomitrium patens HOM05D005332 ORTHO05D006861 6.0e-68 261.5 232 55.2
Mapoly0113s0013 Marchantia polymorpha HOM05D005332 ORTHO05D006861 1.7e-67 260.0 220 58.2
CiPaw.01G056200 Carya illinoinensis HOM05D005332 ORTHO05D006861 3.3e-66 255.8 157 76.4
Psat4g153040 Pisum sativum HOM05D005332 ORTHO05D006861 3.3e-66 255.8 188 67.6
RcHm_v2.0_Chr1g0353241 Rosa chinensis HOM05D005332 ORTHO05D006861 9.6e-66 254.2 156 77.6
RcHm_v2.0_Chr1g0353141 Rosa chinensis HOM05D005332 ORTHO05D006861 8.1e-65 251.1 159 77.4
MBI18_g10614_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 4.0e-64 248.8 189 64.0
RcHm_v2.0_Chr1g0353331 Rosa chinensis HOM05D005332 ORTHO05D006861 1.2e-63 247.3 178 70.2
CARHR248730 Cardamine hirsuta HOM05D005332 ORTHO05D006861 1.3e-62 243.8 157 73.2
Dinv43779 Davidia involucrata HOM05D005332 ORTHO05D006861 1.9e-58 229.9 138 76.8
RcHm_v2.0_Chr0c39g0503281 Rosa chinensis HOM05D005332 ORTHO05D006861 4.0e-56 222.2 161 71.4
RcHm_v2.0_Chr0c39g0503211 Rosa chinensis HOM05D005332 ORTHO05D006861 1.5e-55 220.3 156 69.9
AagrBONN_evm.TU.Sc2ySwM_117.1953 Anthoceros agrestis HOM05D005332 ORTHO05D006861 3.8e-54 215.7 250 46.0
SMO137G0161 Selaginella moellendorffii HOM05D005332 ORTHO05D006861 8.4e-54 214.5 221 51.1
unitig_0.g1508 Utricularia gibba HOM05D005332 ORTHO05D006861 2.4e-53 213.0 229 50.2
CAN.G960.12 Capsicum annuum HOM05D005332 ORTHO05D006861 3.7e-41 172.6 117 74.4
Glyma.03G015066 Glycine max HOM05D005332 ORTHO05D006861 8.5e-38 161.4 103 72.8
MD01G1052200 Malus domestica HOM05D005332 ORTHO05D006861 9.3e-37 157.9 97 75.3
Cre17.g718250 Chlamydomonas reinhardtii HOM05D005332 ORTHO05D006861 3.3e-34 149.4 222 43.2
PRCOL_00000453 Prasinoderma coloniale HOM05D005332 ORTHO05D006861 1.3e-33 147.5 233 41.2
MD01G1052100 Malus domestica HOM05D005332 ORTHO05D006861 1.2e-31 141.0 126 60.3
MCO04G198 Micromonas commoda HOM05D005332 ORTHO05D006861 1.2e-31 141.0 235 40.0
arahy.Tifrunner.gnm1.ann1.FSVT9P Arachis hypogaea HOM05D005332 ORTHO05D006861 6.3e-25 118.6 89 64.0
arahy.Tifrunner.gnm1.ann1.F84KN2 Arachis hypogaea HOM05D005332 ORTHO05D006861 1.1e-24 117.9 82 68.3
RcHm_v2.0_Chr1g0353321 Rosa chinensis HOM05D005332 ORTHO05D006861 1.3e-14 84.3 75 57.3
RcHm_v2.0_Chr3g0477641 Rosa chinensis HOM05D005332 ORTHO05D006861 5.0e-14 82.4 53 73.6
Glyma.03G015132 Glycine max HOM05D005332 ORTHO05D006861 3.6e-12 76.3 85 49.4
RcHm_v2.0_Chr0c39g0503291 Rosa chinensis HOM05D005332 ORTHO05D006861 8.2e-09 65.1 60 60.0
RcHm_v2.0_Chr1g0353131 Rosa chinensis HOM05D005332 ORTHO05D006861 8.2e-09 65.1 60 60.0
QL02p088489 Quercus lobata HOM05D005332 ORTHO05D006861 5.3e-08 62.4 40 67.5
QL03p011361 Quercus lobata HOM05D005332 ORTHO05D006861 5.3e-08 62.4 40 67.5
QL07p038896 Quercus lobata HOM05D005332 ORTHO05D006861 5.3e-08 62.4 40 67.5
SEGI_30707 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 4.5e-07 59.3 42 57.1


User provided reference genes

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