Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc23g0002980 Simmondsia chinensis HOM05D003942 ORTHO05D004527 3.6e-222 774.6 394 100.0
Gorai.007G098800 Gossypium raimondii HOM05D003942 ORTHO05D004527 4.5e-132 475.3 336 72.3
TAR629G1832 Trochodendron aralioides HOM05D003942 ORTHO05D004527 1.0e-131 474.2 347 70.0
Gohir.A11G088200 Gossypium hirsutum HOM05D003942 ORTHO05D004527 1.7e-131 473.4 335 71.9
Potri.014G082900 Populus trichocarpa HOM05D003942 ORTHO05D004527 1.2e-129 467.2 336 71.4
Dinv32469 Davidia involucrata HOM05D003942 ORTHO05D004527 1.6e-129 466.8 401 63.1
Thecc.01G360500 Theobroma cacao HOM05D003942 ORTHO05D004527 1.6e-129 466.8 328 72.6
QL08p049021 Quercus lobata HOM05D003942 ORTHO05D004527 2.1e-129 466.5 353 69.7
MBI18_g25515_MAGBIO Magnolia biondii HOM05D003942 ORTHO05D004527 2.7e-129 466.1 390 63.8
Actinidia10022 Actinidia chinensis HOM05D003942 ORTHO05D004527 1.3e-128 463.8 365 65.2
CANSAT56G2580 Cannabis sativa HOM05D003942 ORTHO05D004527 1.3e-128 463.8 334 72.5
MD01G1057600 Malus domestica HOM05D003942 ORTHO05D004527 3.0e-128 462.6 351 69.5
Sabra14G0060100 Salix brachista HOM05D003942 ORTHO05D004527 3.9e-128 462.2 329 72.6
TWI59G0555 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 5.1e-128 461.8 303 73.9
Cfa003938 Carpinus fangiana HOM05D003942 ORTHO05D004527 1.1e-127 460.7 374 65.8
Hund27285 Selenicereus undatus HOM05D003942 ORTHO05D004527 2.5e-127 459.5 372 66.1
Ciclev10020374m.g Citrus clementina HOM05D003942 ORTHO05D004527 9.7e-127 457.6 361 67.6
Duzib133G0298 Durio zibethinus HOM05D003942 ORTHO05D004527 1.3e-126 457.2 355 68.5
Manes.05G036000 Manihot esculenta HOM05D003942 ORTHO05D004527 1.3e-126 457.2 311 74.9
Cpa.g.sc18.243 Carica papaya HOM05D003942 ORTHO05D004527 1.6e-126 456.8 392 64.5
CDE09G0298 Ceratophyllum demersum HOM05D003942 ORTHO05D004527 2.2e-126 456.4 302 72.5
AUR62022550 Chenopodium quinoa HOM05D003942 ORTHO05D004527 2.2e-126 456.4 301 73.4
COL.COLO4_12700 Corchorus olitorius HOM05D003942 ORTHO05D004527 2.2e-126 456.4 354 67.8
TWI23G1005 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 2.2e-126 456.4 333 70.3
Prupe.2G168100 Prunus persica HOM05D003942 ORTHO05D004527 4.8e-126 455.3 377 63.9
MD07G1139000 Malus domestica HOM05D003942 ORTHO05D004527 1.1e-125 454.1 336 70.5
RcHm_v2.0_Chr1g0355071 Rosa chinensis HOM05D003942 ORTHO05D004527 1.4e-125 453.8 344 67.2
Lj9A582T85 Lonicera japonica HOM05D003942 ORTHO05D004527 2.4e-125 453.0 327 70.3
BcaC07g40631 Brassica carinata HOM05D003942 ORTHO05D004527 5.3e-125 451.8 381 62.5
Rhsim07G0016400 Rhododendron simsii HOM05D003942 ORTHO05D004527 5.3e-125 451.8 340 69.1
CSS0049620 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 6.9e-125 451.4 318 71.4
CiPaw.01G059900 Carya illinoinensis HOM05D003942 ORTHO05D004527 6.9e-125 451.4 341 70.1
TAR375G0209 Trochodendron aralioides HOM05D003942 ORTHO05D004527 6.9e-125 451.4 311 72.3
AUR62004344 Chenopodium quinoa HOM05D003942 ORTHO05D004527 9.0e-125 451.1 302 72.8
THA.LOC104817290 Tarenaya hassleriana HOM05D003942 ORTHO05D004527 1.2e-124 450.7 394 64.2
Cc02_g37870 Coffea canephora HOM05D003942 ORTHO05D004527 1.5e-124 450.3 308 74.0
CSS0041241 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 2.6e-124 449.5 318 71.1
FAN10G4090 Fragaria x ananassa HOM05D003942 ORTHO05D004527 3.4e-124 449.1 344 67.2
CiPaw.02G030000 Carya illinoinensis HOM05D003942 ORTHO05D004527 4.5e-124 448.7 296 77.0
FAN01G0250 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.7e-123 446.8 344 66.6
A04p01160 Brassica napus HOM05D003942 ORTHO05D004527 2.9e-123 446.0 381 62.7
BraA04t15833Z Brassica rapa HOM05D003942 ORTHO05D004527 2.9e-123 446.0 381 62.7
HanXRQChr16g0522811 Helianthus annuus HOM05D003942 ORTHO05D004527 6.5e-123 444.9 340 68.8
Glyma.07G071900 Glycine max HOM05D003942 ORTHO05D004527 1.1e-122 444.1 306 72.9
Nitab4.5_0008050g0040 Nicotiana tabacum HOM05D003942 ORTHO05D004527 1.1e-122 444.1 338 70.7
SalBow5G2271 Salvia bowleyana HOM05D003942 ORTHO05D004527 1.4e-122 443.7 356 63.8
FvH4_7g14170 Fragaria vesca HOM05D003942 ORTHO05D004527 1.9e-122 443.4 314 70.4
C04p31390 Brassica napus HOM05D003942 ORTHO05D004527 2.5e-122 443.0 381 61.9
Sp5g02060 Schrenkiella parvula HOM05D003942 ORTHO05D004527 2.5e-122 443.0 359 63.8
SGA_v2.0_scaffold43G16422 Striga asiatica HOM05D003942 ORTHO05D004527 2.5e-122 443.0 373 63.8
Eucgr.E00157 Eucalyptus grandis HOM05D003942 ORTHO05D004527 3.2e-122 442.6 313 70.3
Atru.chr5.464 Acer truncatum HOM05D003942 ORTHO05D004527 4.2e-122 442.2 330 68.8
Glyma.03G010800 Glycine max HOM05D003942 ORTHO05D004527 4.2e-122 442.2 347 66.9
FAN03G2475 Fragaria x ananassa HOM05D003942 ORTHO05D004527 5.5e-122 441.8 344 65.7
FAN06G2309 Fragaria x ananassa HOM05D003942 ORTHO05D004527 7.2e-122 441.4 314 70.1
PGR042G2566 Punica granatum HOM05D003942 ORTHO05D004527 7.2e-122 441.4 342 68.1
FAN06G3470 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.2e-121 440.7 314 70.4
A09p53400 Brassica napus HOM05D003942 ORTHO05D004527 3.6e-121 439.1 343 64.7
MSTRG.4859 Avicennia marina HOM05D003942 ORTHO05D004527 4.6e-121 438.7 357 63.3
BolC4t24688H Brassica oleracea HOM05D003942 ORTHO05D004527 4.6e-121 438.7 381 61.4
Lalb_Chr03g0038211 Lupinus albus HOM05D003942 ORTHO05D004527 4.6e-121 438.7 349 65.9
Nitab4.5_0001702g0090 Nicotiana tabacum HOM05D003942 ORTHO05D004527 7.9e-121 438.0 312 72.8
Peaxi162Scf00191g01422 Petunia axillaris HOM05D003942 ORTHO05D004527 7.9e-121 438.0 309 72.8
Aa31LG10G15570 Aethionema arabicum HOM05D003942 ORTHO05D004527 1.0e-120 437.6 361 63.7
CAN.G399.13 Capsicum annuum HOM05D003942 ORTHO05D004527 1.8e-120 436.8 338 67.8
AL5G43590 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 3.9e-120 435.6 379 61.2
Lsat_1_v5_gn_3_137060 Lactuca sativa HOM05D003942 ORTHO05D004527 3.9e-120 435.6 311 70.7
VMungo0331G0006 Vigna mungo HOM05D003942 ORTHO05D004527 3.9e-120 435.6 318 68.9
Thhalv10006010m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 5.1e-120 435.3 385 60.3
Psat4g154400 Pisum sativum HOM05D003942 ORTHO05D004527 5.1e-120 435.3 338 66.9
Carub.0005s2799 Capsella rubella HOM05D003942 ORTHO05D004527 6.7e-120 434.9 379 60.9
C08p36210 Brassica napus HOM05D003942 ORTHO05D004527 1.5e-119 433.7 389 60.2
BcaC02g10219 Brassica carinata HOM05D003942 ORTHO05D004527 1.9e-119 433.3 379 61.2
Lsat_1_v5_gn_4_36221 Lactuca sativa HOM05D003942 ORTHO05D004527 1.9e-119 433.3 324 68.8
BolC8t51203H Brassica oleracea HOM05D003942 ORTHO05D004527 2.5e-119 433.0 387 59.9
BraA09t40766Z Brassica rapa HOM05D003942 ORTHO05D004527 3.3e-119 432.6 343 63.6
HanXRQChr13g0426521 Helianthus annuus HOM05D003942 ORTHO05D004527 3.7e-118 429.1 324 67.6
Ah.05g180690 Amaranthus hybridus HOM05D003942 ORTHO05D004527 4.8e-118 428.7 355 62.5
Lalb_Chr04g0256871 Lupinus albus HOM05D003942 ORTHO05D004527 1.1e-117 427.6 296 71.3
Aqoxy5G04009 Aquilegia oxysepala HOM05D003942 ORTHO05D004527 1.4e-117 427.2 341 67.7
Phvul.010G097300 Phaseolus vulgaris HOM05D003942 ORTHO05D004527 1.8e-117 426.8 318 67.6
Solyc05g049900.3 Solanum lycopersicum HOM05D003942 ORTHO05D004527 3.1e-117 426.0 336 66.4
Ca_23643_v3 Cicer arietinum L. HOM05D003942 ORTHO05D004527 6.9e-117 424.9 302 70.5
DCAR_015969 Daucus carota HOM05D003942 ORTHO05D004527 6.9e-117 424.9 363 62.3
Sopen05g028240 Solanum pennellii HOM05D003942 ORTHO05D004527 6.9e-117 424.9 355 63.4
arahy.Tifrunner.gnm1.ann1.2H0UDK Arachis hypogaea HOM05D003942 ORTHO05D004527 1.2e-116 424.1 322 67.1
PGSC0003DMG400021644 Solanum tuberosum HOM05D003942 ORTHO05D004527 1.5e-116 423.7 355 63.7
GSVIVG01026895001 Vitis vinifera HOM05D003942 ORTHO05D004527 2.0e-116 423.3 276 74.6
arahy.Tifrunner.gnm1.ann1.Q5YAPI Arachis hypogaea HOM05D003942 ORTHO05D004527 3.4e-116 422.5 322 67.1
BcaC09g52244 Brassica carinata HOM05D003942 ORTHO05D004527 7.7e-116 421.4 362 60.8
BcaC02g07065 Brassica carinata HOM05D003942 ORTHO05D004527 1.0e-115 421.0 332 65.7
BraA04t18872Z Brassica rapa HOM05D003942 ORTHO05D004527 2.2e-115 419.9 327 66.4
Haze_15488 Corylus avellana HOM05D003942 ORTHO05D004527 2.2e-115 419.9 326 68.1
unitig_8.g3394 Utricularia gibba HOM05D003942 ORTHO05D004527 2.2e-115 419.9 378 59.0
CARHR141140 Cardamine hirsuta HOM05D003942 ORTHO05D004527 5.0e-115 418.7 326 66.0
BolC4t28689H Brassica oleracea HOM05D003942 ORTHO05D004527 3.2e-114 416.0 297 69.4
Migut.N01440 Erythranthe guttata HOM05D003942 ORTHO05D004527 3.2e-114 416.0 339 62.2
C04p71910 Brassica napus HOM05D003942 ORTHO05D004527 4.2e-114 415.6 297 69.4
Lj3g0006137 Lotus japonicus HOM05D003942 ORTHO05D004527 5.5e-114 415.2 323 65.6
AL4G45080 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 9.4e-114 414.5 311 66.9
A04p34110 Brassica napus HOM05D003942 ORTHO05D004527 9.4e-114 414.5 327 66.1
Thhalv10001467m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 1.2e-113 414.1 311 66.9
Carub.0004s2857 Capsella rubella HOM05D003942 ORTHO05D004527 1.6e-113 413.7 311 67.2
ECA240G2096 Erigeron canadensis HOM05D003942 ORTHO05D004527 7.9e-113 411.4 276 73.9
Oeu020562.1 Olea europaea HOM05D003942 ORTHO05D004527 3.0e-112 409.5 276 73.2
AT2G45870 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 3.9e-112 409.1 347 62.0
Sp4g27940 Schrenkiella parvula HOM05D003942 ORTHO05D004527 6.7e-112 408.3 295 68.8
Medtr8g031000 Medicago truncatula HOM05D003942 ORTHO05D004527 3.7e-110 402.5 277 72.2
Aa31LG1G27300 Aethionema arabicum HOM05D003942 ORTHO05D004527 5.3e-109 398.7 312 65.4
TPR.G15979 Trifolium pratense HOM05D003942 ORTHO05D004527 3.8e-107 392.5 276 70.3
Os03g0106000 Oryza sativa ssp. japonica HOM05D003942 ORTHO05D004527 5.2e-104 382.1 315 64.1
HPP92_006558 Vanilla planifolia HOM05D003942 ORTHO05D004527 1.3e-102 377.5 299 63.9
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 4.1e-101 372.5 248 73.4
Zm00001eb000510 Zea mays HOM05D003942 ORTHO05D004527 5.3e-101 372.1 334 59.0
SEGI_25793 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 1.0e-96 357.8 295 61.0
SEGI_35716 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 4.4e-95 352.4 313 59.4
Pp3c3_22870 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.4e-93 346.7 285 59.6
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 4.5e-92 342.4 235 73.2
Pp3c4_15850 Physcomitrium patens HOM05D003942 ORTHO05D004527 7.7e-92 341.7 291 58.4
Gohir.D11G092500 Gossypium hirsutum HOM05D003942 ORTHO05D004527 1.6e-89 334.0 265 66.8
Mapoly0071s0037 Marchantia polymorpha HOM05D003942 ORTHO05D004527 1.8e-88 330.5 311 54.0
Duzib138G1448 Durio zibethinus HOM05D003942 ORTHO05D004527 3.5e-84 316.2 251 67.7
Nn1g01512 Nelumbo nucifera HOM05D003942 ORTHO05D004527 3.8e-83 312.8 283 60.4
SMO364G0338 Selaginella moellendorffii HOM05D003942 ORTHO05D004527 3.0e-80 303.1 293 50.9
AT3G61320 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 5.2e-80 302.4 264 60.2
vmacro13277 Vaccinium macrocarpon HOM05D003942 ORTHO05D004527 4.6e-68 262.7 342 46.5
AagrBONN_evm.TU.Sc2ySwM_362.1957 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.9e-66 257.3 292 44.9
ATR0680G085 Amborella trichopoda HOM05D003942 ORTHO05D004527 9.5e-66 255.0 206 63.1
AagrBONN_evm.TU.Sc2ySwM_228.958 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.4e-64 251.1 270 47.0
MD01G1202300 Malus domestica HOM05D003942 ORTHO05D004527 1.5e-63 247.7 255 55.7
AagrBONN_evm.TU.Sc2ySwM_344.3805 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.9e-61 240.7 284 44.0
FAN10G2852 Fragaria x ananassa HOM05D003942 ORTHO05D004527 4.1e-61 239.6 262 53.4
Mapoly0009s0131 Marchantia polymorpha HOM05D003942 ORTHO05D004527 5.4e-61 239.2 283 43.1
CARHR171630 Cardamine hirsuta HOM05D003942 ORTHO05D004527 8.6e-59 231.9 210 61.9
Pp3c2_13700 Physcomitrium patens HOM05D003942 ORTHO05D004527 4.3e-58 229.6 342 39.2
CBR_g44610 Chara braunii HOM05D000505 ORTHO05D000301 1.2e-57 228.0 322 40.4
Pp3c1_34560 Physcomitrium patens HOM05D003942 ORTHO05D004527 6.2e-57 225.7 273 42.5
Pp3c1_3670 Physcomitrium patens HOM05D003942 ORTHO05D004527 8.1e-57 225.3 276 42.4
Pp3c11_9440 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.5e-55 221.1 276 40.9
Pp3c1_34600 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.3e-54 218.0 273 40.3
Pp3c14_6660 Physcomitrium patens HOM05D003942 ORTHO05D004527 4.6e-52 209.5 261 40.6
Pp3c6_24250 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.9e-51 206.5 271 39.9
C05p09980 Brassica napus HOM05D003942 ORTHO05D004527 2.5e-50 203.8 149 69.8
Oeu020563.1 Olea europaea HOM05D003942 ORTHO05D004527 2.5e-50 203.8 155 71.6
HPP92_011356 Vanilla planifolia HOM05D003942 ORTHO05D004527 2.1e-49 200.7 127 70.1
CBR_g772 Chara braunii HOM05D003942 ORTHO05D004527 8.9e-48 195.3 290 39.7
SEGI_34263 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 1.9e-42 177.6 160 61.9
AagrBONN_evm.TU.Sc2ySwM_228.2628 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.5e-39 167.9 136 53.7
CBR_g38187 Chara braunii HOM05D003942 ORTHO05D004527 1.5e-39 167.9 220 43.6
HPP92_011355 Vanilla planifolia HOM05D003942 ORTHO05D004527 2.0e-39 167.5 139 65.5
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 8.4e-38 162.2 125 70.4
Cre06.g277650 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 4.3e-34 149.8 284 35.2
Cre06.g261750 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.6e-33 147.9 310 30.3
Cre16.g662600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.8e-32 144.4 282 33.0
Cre11.g474700 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.4e-32 144.1 286 31.5
Cre16.g663450 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.5e-31 141.4 275 33.1
Cre16.g663400 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 9.9e-31 138.7 282 31.6
BcaB02g11262 Brassica carinata HOM05D003942 ORTHO05D004527 1.8e-24 117.9 111 53.2
Cre07.g355300 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 5.3e-24 116.3 275 29.5
SEGI_01331 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 6.9e-24 115.9 69 76.8
Oeu020564.1 Olea europaea HOM05D003942 ORTHO05D004527 1.5e-23 114.8 77 79.2
Cre01.g038100 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.0e-23 114.4 274 25.9
PRCOL_00003548 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 4.5e-23 113.2 317 30.6
PRCOL_00004040 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 4.5e-23 113.2 282 30.5
FAN10G3156 Fragaria x ananassa HOM05D000449 ORTHO05D004527 2.2e-22 110.9 81 69.1
PRCOL_00003097 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 4.2e-21 106.7 279 29.4
Pp3c6_17920 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.0e-19 102.1 189 33.9
Pp3c11_6680 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.8e-19 101.3 134 40.3
PRCOL_00006054 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 2.1e-17 94.4 270 27.0
PRCOL_00005764 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 3.7e-17 93.6 327 27.8
MCO01G232 Micromonas commoda HOM05D003942 ORTHO05D004527 2.0e-15 87.8 314 25.2
Cre03.g199600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 4.2e-13 80.1 193 25.9
PRCOL_00004398 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.2e-12 78.6 307 27.0
MCO09G357 Micromonas commoda HOM05D003942 ORTHO05D004527 1.0e-11 75.5 347 23.6
PSO478G4509 Papaver somniferum HOM05D003942 ORTHO05D004527 2.2e-09 67.8 62 64.5
MCO01G007 Micromonas commoda HOM05D003942 ORTHO05D004527 1.2e-07 62.0 261 24.9


User provided reference genes

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