Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc23g0002810 Simmondsia chinensis HOM05D001925 ORTHO05D004257 2.6e-135 485.3 241 100.0
Sc26g0000880 Simmondsia chinensis HOM05D001925 ORTHO05D004257 1.7e-73 280.0 243 61.7
Thecc.01G357700 Theobroma cacao HOM05D001925 ORTHO05D004257 1.6e-55 220.3 275 48.0
Ah.05g180510 Amaranthus hybridus HOM05D001925 ORTHO05D004257 5.6e-53 211.8 281 46.6
Rhsim01G0159000 Rhododendron simsii HOM05D001925 ORTHO05D004257 5.6e-53 211.8 246 52.4
Lj9A584T67 Lonicera japonica HOM05D001925 ORTHO05D004257 2.1e-52 209.9 270 47.4
Dinv32493 Davidia involucrata HOM05D001925 ORTHO05D004257 2.8e-52 209.5 282 46.8
vmacro20933 Vaccinium macrocarpon HOM05D001925 ORTHO05D004257 6.2e-52 208.4 268 47.0
QL04p053608 Quercus lobata HOM05D001925 ORTHO05D004257 1.4e-51 207.2 285 46.0
CSS0032978 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D004257 1.8e-51 206.8 279 45.5
Duzib138G1880 Durio zibethinus HOM05D001925 ORTHO05D004257 1.2e-50 204.1 275 45.8
Manes.01G255700 Manihot esculenta HOM05D001925 ORTHO05D004257 1.2e-50 204.1 256 49.2
Cpa.g.sc11.19 Carica papaya HOM05D001925 ORTHO05D004257 2.6e-50 203.0 256 48.8
Gorai.007G100500 Gossypium raimondii HOM05D001925 ORTHO05D004257 2.6e-50 203.0 275 49.1
Actinidia02837 Actinidia chinensis HOM05D001925 ORTHO05D004257 3.4e-50 202.6 283 47.0
RcHm_v2.0_Chr1g0355951 Rosa chinensis HOM05D001925 ORTHO05D004257 3.4e-50 202.6 276 44.2
CiPaw.02G032000 Carya illinoinensis HOM05D001925 ORTHO05D004257 7.6e-50 201.4 282 45.7
Duzib133G0433 Durio zibethinus HOM05D001925 ORTHO05D004257 1.3e-49 200.7 275 44.4
Atru.chr5.510 Acer truncatum HOM05D001925 ORTHO05D004257 2.2e-49 199.9 281 45.2
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 4.9e-49 198.7 279 45.5
GSVIVG01026948001 Vitis vinifera HOM05D001925 ORTHO05D004257 6.5e-49 198.4 246 50.0
Gohir.A11G089800 Gossypium hirsutum HOM05D001925 ORTHO05D004257 8.4e-49 198.0 275 46.9
Gohir.D11G094100 Gossypium hirsutum HOM05D001925 ORTHO05D004257 1.4e-48 197.2 275 48.4
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 9.3e-48 194.5 276 43.5
Prupe.2G172100 Prunus persica HOM05D001925 ORTHO05D004257 9.3e-48 194.5 279 42.7
TWI23G0808 Tripterygium wilfordii HOM05D001925 ORTHO05D004257 1.2e-47 194.1 279 45.9
TAR629G3070 Trochodendron aralioides HOM05D001925 ORTHO05D004257 1.6e-47 193.7 284 42.3
CiPaw.01G062900 Carya illinoinensis HOM05D001925 ORTHO05D004257 2.7e-47 193.0 240 52.1
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 2.7e-47 193.0 275 43.6
Manes.05G033200 Manihot esculenta HOM05D001925 ORTHO05D004257 2.7e-47 193.0 255 48.2
FAN10G2559 Fragaria x ananassa HOM05D001925 ORTHO05D004257 3.5e-47 192.6 276 43.1
Eucgr.D02304 Eucalyptus grandis HOM05D001925 ORTHO05D004257 6.0e-47 191.8 271 46.1
FAN10G1179 Fragaria x ananassa HOM05D001925 ORTHO05D004257 6.0e-47 191.8 276 43.1
Sopen01g038550 Solanum pennellii HOM05D001925 ORTHO05D004257 6.0e-47 191.8 240 47.9
MD01G1065100 Malus domestica HOM05D001925 ORTHO05D004257 1.0e-46 191.0 289 41.9
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 1.3e-46 190.7 278 45.7
FAN03G0610 Fragaria x ananassa HOM05D001925 ORTHO05D004257 1.3e-46 190.7 276 44.6
FvH4_7g14520 Fragaria vesca HOM05D001925 ORTHO05D004257 1.8e-46 190.3 276 42.8
FAN06G4809 Fragaria x ananassa HOM05D001925 ORTHO05D004257 2.3e-46 189.9 276 44.2
Ca_07929_v3 Cicer arietinum L. HOM05D001925 ORTHO05D004257 3.9e-46 189.1 274 44.2
TAR375G1105 Trochodendron aralioides HOM05D001925 ORTHO05D004257 5.1e-46 188.7 287 41.8
Nitab4.5_0006018g0030 Nicotiana tabacum HOM05D001925 ORTHO05D004257 6.7e-46 188.3 245 46.5
TWI59G0730 Tripterygium wilfordii HOM05D001925 ORTHO05D004257 8.7e-46 188.0 279 42.3
FAN06G3089 Fragaria x ananassa HOM05D001925 ORTHO05D004257 1.1e-45 187.6 276 42.4
VMungo1383G2450 Vigna mungo HOM05D001925 ORTHO05D004257 1.1e-45 187.6 279 44.1
MSTRG.14225 Avicennia marina HOM05D001925 ORTHO05D004257 3.3e-45 186.0 269 43.5
Phvul.008G061700 Phaseolus vulgaris HOM05D001925 ORTHO05D004257 3.3e-45 186.0 280 44.3
TPR.G37799 Trifolium pratense HOM05D001925 ORTHO05D004257 5.7e-45 185.3 279 42.7
Oeu031215.1 Olea europaea HOM05D001925 ORTHO05D004257 7.4e-45 184.9 275 41.1
CANSAT21G1319 Cannabis sativa HOM05D001925 ORTHO05D004257 2.8e-44 183.0 278 43.9
Ciclev10021244m.g Citrus clementina HOM05D001925 ORTHO05D004257 2.8e-44 183.0 279 44.4
Hma1.2p1_0780F.1_g216780 Hydrangea macrophylla HOM05D001925 ORTHO05D004257 3.7e-44 182.6 301 40.2
MD07G1135300 Malus domestica HOM05D001925 ORTHO05D004257 4.8e-44 182.2 289 41.9
TAR636G0324 Trochodendron aralioides HOM05D001925 ORTHO05D004257 4.8e-44 182.2 248 44.8
Migut.M00740 Erythranthe guttata HOM05D001925 ORTHO05D004257 8.2e-44 181.4 274 43.4
Glyma.18G234100 Glycine max HOM05D001925 ORTHO05D004257 8.2e-44 181.4 281 43.1
Cc02_g38170 Coffea canephora HOM05D001925 ORTHO05D004257 1.1e-43 181.0 282 44.3
Peaxi162Scf00020g00730 Petunia axillaris HOM05D001925 ORTHO05D004257 1.1e-43 181.0 277 42.2
PGR031G2850 Punica granatum HOM05D001925 ORTHO05D004257 1.4e-43 180.6 266 45.1
Actinidia10041 Actinidia chinensis HOM05D001925 ORTHO05D004257 1.8e-43 180.3 283 41.3
Lj1g0025308 Lotus japonicus HOM05D001925 ORTHO05D004257 1.8e-43 180.3 276 40.9
Sabra14G0062300 Salix brachista HOM05D001925 ORTHO05D004257 1.8e-43 180.3 278 44.6
Potri.014G086000 Populus trichocarpa HOM05D001925 ORTHO05D004257 2.4e-43 179.9 286 44.8
arahy.Tifrunner.gnm1.ann1.IGP217 Arachis hypogaea HOM05D001925 ORTHO05D004257 3.1e-43 179.5 283 43.5
arahy.Tifrunner.gnm1.ann1.E5DFEG Arachis hypogaea HOM05D001925 ORTHO05D004257 4.1e-43 179.1 283 43.5
Rhsim07G0013800 Rhododendron simsii HOM05D001925 ORTHO05D004257 5.3e-43 178.7 293 40.3
Glyma.09G258600 Glycine max HOM05D001925 ORTHO05D004257 2.6e-42 176.4 281 42.0
Hma1.2p1_0780F.1_g216750 Hydrangea macrophylla HOM05D001925 ORTHO05D004257 2.6e-42 176.4 303 40.9
Nn1g01562 Nelumbo nucifera HOM05D001925 ORTHO05D004257 4.5e-42 175.6 287 40.8
PGSC0003DMG400000175 Solanum tuberosum HOM05D001925 ORTHO05D004257 4.5e-42 175.6 276 41.3
Nitab4.5_0000583g0190 Nicotiana tabacum HOM05D001925 ORTHO05D004257 5.9e-42 175.3 245 46.1
Hund27265 Selenicereus undatus HOM05D001925 ORTHO05D004257 7.6e-42 174.9 303 42.6
CsaV3_3G008850 Cucumis sativus L. HOM05D001925 ORTHO05D004257 1.0e-41 174.5 280 42.5
Nn6g33385 Nelumbo nucifera HOM05D001925 ORTHO05D004257 1.0e-41 174.5 290 40.7
Oeu061351.3 Olea europaea HOM05D001925 ORTHO05D004257 1.0e-41 174.5 230 45.2
SalBow8G4919 Salvia bowleyana HOM05D001925 ORTHO05D004257 1.0e-41 174.5 274 39.4
ClCG05G001470 Citrullus lanatus HOM05D001925 ORTHO05D004257 2.2e-41 173.3 276 42.8
Psat3g108000 Pisum sativum HOM05D001925 ORTHO05D004257 2.9e-41 172.9 280 41.8
TAR374G1741 Trochodendron aralioides HOM05D001925 ORTHO05D004257 3.8e-41 172.6 288 39.6
EL10Ac1g00401 Beta vulgaris HOM05D001925 ORTHO05D004257 5.0e-41 172.2 305 40.0
MELO3C006104.2 Cucumis melo HOM05D001925 ORTHO05D004257 6.5e-41 171.8 275 42.5
Medtr7g077860 Medicago truncatula HOM05D001925 ORTHO05D004257 1.4e-40 170.6 282 41.8
Sp6g00430 Schrenkiella parvula HOM05D001925 ORTHO05D004257 2.5e-40 169.9 258 41.9
Sed0006621 Sechium edule HOM05D001925 ORTHO05D004257 3.2e-40 169.5 264 43.2
Lalb_Chr23g0275821 Lupinus albus HOM05D001925 ORTHO05D004257 4.2e-40 169.1 282 39.7
Potri.002G160700 Populus trichocarpa HOM05D001925 ORTHO05D004257 4.2e-40 169.1 269 45.0
PGR042G2528 Punica granatum HOM05D001925 ORTHO05D004257 9.3e-40 167.9 294 38.4
CAN.G78.91 Capsicum annuum HOM05D001925 ORTHO05D004257 1.6e-39 167.2 276 40.2
THA.LOC104825845 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 2.1e-39 166.8 239 45.6
AUR62022581 Chenopodium quinoa HOM05D001925 ORTHO05D004257 2.7e-39 166.4 306 38.9
Oeu005388.3 Olea europaea HOM05D001925 ORTHO05D004257 6.1e-39 165.2 273 42.9
ATR0680G064 Amborella trichopoda HOM05D001925 ORTHO05D004257 2.3e-38 163.3 318 38.1
THA.LOC104817027 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 3.9e-38 162.5 245 42.4
Sabra02G0127500 Salix brachista HOM05D001925 ORTHO05D004257 8.7e-38 161.4 269 43.1
Thhalv10029186m.g Eutrema salsugineum HOM05D001925 ORTHO05D004257 1.9e-37 160.2 262 43.1
Aa31LG5G590 Aethionema arabicum HOM05D001925 ORTHO05D004257 3.3e-37 159.5 259 42.9
Carub.0004s2868 Capsella rubella HOM05D001925 ORTHO05D004257 3.3e-37 159.5 237 44.7
MBI18_g02843_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 3.3e-37 159.5 288 36.1
SGA_v2.0_scaffold55G19707 Striga asiatica HOM05D001925 ORTHO05D004257 3.3e-37 159.5 232 44.0
Aqoxy7G00278 Aquilegia oxysepala HOM05D001925 ORTHO05D004257 4.3e-37 159.1 283 38.5
CARHR248450 Cardamine hirsuta HOM05D001925 ORTHO05D004257 9.7e-37 157.9 245 43.7
Sed0020685 Sechium edule HOM05D001925 ORTHO05D004257 2.8e-36 156.4 268 42.5
Sopen10g006250 Solanum pennellii HOM05D001925 ORTHO05D004257 3.7e-36 156.0 287 34.8
AL4G45210 Arabidopsis lyrata HOM05D001925 ORTHO05D004257 6.3e-36 155.2 243 44.0
Solyc10g012420.3 Solanum lycopersicum HOM05D001925 ORTHO05D004257 6.3e-36 155.2 287 34.8
Nitab4.5_0000386g0060 Nicotiana tabacum HOM05D001925 ORTHO05D004257 3.1e-35 152.9 273 39.2
CARHR141250 Cardamine hirsuta HOM05D001925 ORTHO05D004257 4.1e-35 152.5 238 42.0
AUR62004372 Chenopodium quinoa HOM05D001925 ORTHO05D004257 4.1e-35 152.5 306 36.9
PGSC0003DMG400006504 Solanum tuberosum HOM05D001925 ORTHO05D004257 4.1e-35 152.5 281 35.9
THA.LOC104802035 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 4.1e-35 152.5 218 45.0
THA.LOC104817300 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 6.9e-35 151.8 264 42.0
Carub.0006s3688 Capsella rubella HOM05D001925 ORTHO05D004257 9.0e-35 151.4 247 39.7
Thhalv10001583m.g Eutrema salsugineum HOM05D001925 ORTHO05D004257 1.2e-34 151.0 245 44.1
unitig_749.g13536 Utricularia gibba HOM05D001925 ORTHO05D004257 1.2e-34 151.0 248 41.1
Nitab4.5_0008206g0010 Nicotiana tabacum HOM05D001925 ORTHO05D004257 2.0e-34 150.2 278 36.7
PSO017G3573 Papaver somniferum HOM05D001925 ORTHO05D004257 2.6e-34 149.8 280 37.1
AT4G00355 Arabidopsis thaliana HOM05D001925 ORTHO05D004257 5.9e-34 148.7 238 40.8
A05p05970 Brassica napus HOM05D001925 ORTHO05D004257 1.3e-33 147.5 225 41.3
BraA05t19560Z Brassica rapa HOM05D001925 ORTHO05D004257 1.3e-33 147.5 225 41.3
AT2G45980 Arabidopsis thaliana HOM05D001925 ORTHO05D004257 1.7e-33 147.1 229 44.1
Eucgr.E00120 Eucalyptus grandis HOM05D001925 ORTHO05D004257 5.0e-33 145.6 263 37.6
DCAR_007445 Daucus carota HOM05D001925 ORTHO05D004257 8.5e-33 144.8 275 36.4
Aa31LG1G27390 Aethionema arabicum HOM05D001925 ORTHO05D004257 1.1e-32 144.4 230 42.2
HanXRQChr13g0426611 Helianthus annuus HOM05D001925 ORTHO05D004257 1.1e-32 144.4 209 44.0
PSO063G1799 Papaver somniferum HOM05D001925 ORTHO05D004257 1.1e-32 144.4 279 35.8
AL6G53090 Arabidopsis lyrata HOM05D001925 ORTHO05D004257 2.5e-32 143.3 256 40.2
Sp4g28050 Schrenkiella parvula HOM05D001925 ORTHO05D004257 3.2e-32 142.9 242 42.1
Medtr2g027720 Medicago truncatula HOM05D001925 ORTHO05D004257 4.2e-32 142.5 229 43.2
C04p06900 Brassica napus HOM05D001925 ORTHO05D004257 1.2e-31 141.0 225 39.6
BolC4t22311H Brassica oleracea HOM05D001925 ORTHO05D004257 1.2e-31 141.0 225 39.6
SalBow3G4075 Salvia bowleyana HOM05D001925 ORTHO05D004257 1.6e-31 140.6 276 34.4
CAN.G116.9 Capsicum annuum HOM05D001925 ORTHO05D004257 3.6e-31 139.4 279 35.1
PSO782G1204 Papaver somniferum HOM05D001925 ORTHO05D004257 3.6e-31 139.4 262 38.5
ECA236G3632 Erigeron canadensis HOM05D001925 ORTHO05D004257 4.6e-31 139.0 259 37.8
PSO478G2649 Papaver somniferum HOM05D001925 ORTHO05D004257 8.8e-30 134.8 263 38.4
A04p34180 Brassica napus HOM05D001925 ORTHO05D004257 3.3e-29 132.9 227 41.0
BraA04t18879Z Brassica rapa HOM05D001925 ORTHO05D004257 3.3e-29 132.9 227 41.0
Peaxi162Scf00008g02423 Petunia axillaris HOM05D001925 ORTHO05D004257 2.2e-28 130.2 270 37.0
C04p71970 Brassica napus HOM05D001925 ORTHO05D004257 3.7e-28 129.4 235 37.9
Lalb_Chr11g0072911 Lupinus albus HOM05D001925 ORTHO05D004257 6.3e-28 128.6 230 40.0
BcaB01g02169 Brassica carinata HOM05D001925 ORTHO05D004257 4.1e-27 125.9 233 38.6
arahy.Tifrunner.gnm1.ann1.2X3TQS Arachis hypogaea HOM05D001925 ORTHO05D004257 4.5e-26 122.5 269 39.4
Lsat_1_v5_gn_7_4301 Lactuca sativa HOM05D001925 ORTHO05D004257 6.5e-25 118.6 262 35.1
Migut.B01767 Erythranthe guttata HOM05D001925 ORTHO05D004257 1.9e-24 117.1 257 34.6
A03p32220 Brassica napus HOM05D001925 ORTHO05D004257 2.5e-24 116.7 241 38.6
BraA03t12392Z Brassica rapa HOM05D001925 ORTHO05D004257 2.5e-24 116.7 241 38.6
HPP92_025783 Vanilla planifolia HOM05D001925 ORTHO05D004257 3.2e-24 116.3 223 39.0
BcaC01g06884 Brassica carinata HOM05D001925 ORTHO05D004257 7.2e-24 115.2 249 38.6
HPP92_014720 Vanilla planifolia HOM05D001925 ORTHO05D004257 1.6e-23 114.0 275 34.2
C03p39260 Brassica napus HOM05D001925 ORTHO05D004257 2.1e-23 113.6 250 38.0
BolC3t16197H Brassica oleracea HOM05D001925 ORTHO05D004257 2.1e-23 113.6 245 38.4
BolC4t28695H Brassica oleracea HOM05D001925 ORTHO05D004257 3.9e-22 109.4 238 34.9
CDE08G0634 Ceratophyllum demersum HOM05D001925 ORTHO05D004257 3.9e-22 109.4 279 31.2
DCAR_025195 Daucus carota HOM05D001925 ORTHO05D004257 6.7e-22 108.6 266 32.7
unitig_8.g3798 Utricularia gibba HOM05D001925 ORTHO05D004257 6.7e-22 108.6 258 34.9
Zm00001eb318800 Zea mays HOM05D001925 ORTHO05D004257 3.3e-21 106.3 242 38.0
Lj6A572T61 Lonicera japonica HOM05D001925 ORTHO05D004257 7.4e-21 105.1 126 46.0
MBI17_g42624_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 7.4e-21 105.1 131 42.7
SGA_v2.0_scaffold4G02300 Striga asiatica HOM05D001925 ORTHO05D004257 1.8e-19 100.5 238 32.4
Zm00001eb103050 Zea mays HOM05D001925 ORTHO05D004257 1.2e-18 97.8 237 34.6
Os04g0165300 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 1.6e-18 97.4 255 33.7
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 1.3e-17 94.4 249 36.1
MBI17_g35262_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 1.7e-17 94.0 78 56.4
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 1.1e-16 91.3 115 47.8
HanXRQChr04g0121161 Helianthus annuus HOM05D001925 ORTHO05D004257 3.2e-16 89.7 200 33.5
SGA_v2.0_scaffold95G28831 Striga asiatica HOM05D001925 ORTHO05D004257 2.1e-15 87.0 220 32.7
Zm00001eb191080 Zea mays HOM05D001925 ORTHO05D004257 1.4e-14 84.3 232 31.5
Os02g0821900 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 3.0e-14 83.2 250 29.2
CDE05G2831 Ceratophyllum demersum HOM05D001925 ORTHO05D004257 6.7e-14 82.0 149 37.6
Zm00001eb305930 Zea mays HOM05D001925 ORTHO05D004257 9.7e-13 78.2 228 30.7
SEGI_07880 Sequoiadendron giganteum HOM05D001925 ORTHO05D004257 1.3e-12 77.8 342 26.9
Zm00001eb087910 Zea mays HOM05D001925 ORTHO05D004257 7.0e-11 72.0 168 32.7
Zm00001eb415260 Zea mays HOM05D001925 ORTHO05D004257 2.7e-10 70.1 169 33.7
Os07g0418200 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 3.5e-10 69.7 203 30.5
SMO112G0035 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 8.5e-09 65.1 67 47.8
SMO364G0089 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 1.9e-08 63.9 67 47.8
Mapoly0022s0094 Marchantia polymorpha HOM05D001925 ORTHO05D004257 6.1e-07 58.9 248 28.6
Pp3c15_17300 Physcomitrium patens HOM05D001925 ORTHO05D004257 2.3e-06 57.0 57 50.9
Pp3c9_18340 Physcomitrium patens HOM05D001925 ORTHO05D004257 3.0e-06 56.6 63 44.4
SEGI_37364 Sequoiadendron giganteum HOM05D001925 ORTHO05D004257 4.0e-06 56.2 240 25.4
Lj6C572T1 Lonicera japonica HOM05D001925 ORTHO05D004257 5.2e-06 55.8 59 57.6


User provided reference genes

Program Settings