Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc23g0002730 Simmondsia chinensis HOM05D004297 ORTHO05D005213 6.8e-116 420.6 206 100.0
Hund27256 Selenicereus undatus HOM05D004297 ORTHO05D005213 2.1e-80 302.8 189 75.1
EL10Ac1g00379 Beta vulgaris HOM05D004297 ORTHO05D005213 1.5e-78 296.6 196 73.5
AUR62004390 Chenopodium quinoa HOM05D004297 ORTHO05D005213 8.2e-77 290.8 194 73.2
CSS0008006 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.1e-76 290.4 191 72.8
AUR62022597 Chenopodium quinoa HOM05D004297 ORTHO05D005213 1.1e-76 290.4 194 73.2
Dinv43843 Davidia involucrata HOM05D004297 ORTHO05D005213 1.8e-76 289.7 191 71.7
vmacro13256 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 4.1e-76 288.5 193 69.4
Cfa003893 Carpinus fangiana HOM05D004297 ORTHO05D005213 1.5e-75 286.6 191 70.2
Haze_15540 Corylus avellana HOM05D004297 ORTHO05D005213 7.6e-75 284.3 191 70.2
MD11G1239500 Malus domestica HOM05D004297 ORTHO05D005213 1.0e-74 283.9 191 69.6
CsaV3_6G000810 Cucumis sativus L. HOM05D004297 ORTHO05D005213 1.3e-74 283.5 192 68.2
Lj9C586G6 Lonicera japonica HOM05D004297 ORTHO05D005213 1.3e-74 283.5 189 70.4
Lsat_1_v5_gn_7_3220 Lactuca sativa HOM05D004297 ORTHO05D005213 1.7e-74 283.1 177 72.9
CiPaw.02G033500 Carya illinoinensis HOM05D004297 ORTHO05D005213 6.5e-74 281.2 190 70.5
Actinidia20884 Actinidia chinensis HOM05D004297 ORTHO05D005213 1.1e-73 280.4 193 69.4
Cpa.g.sc11.37 Carica papaya HOM05D004297 ORTHO05D005213 1.4e-73 280.0 191 69.6
Manes.01G254400 Manihot esculenta HOM05D004297 ORTHO05D005213 1.9e-73 279.6 189 69.8
CAN.G78.102 Capsicum annuum HOM05D004297 ORTHO05D005213 4.2e-73 278.5 194 69.6
Actinidia10047 Actinidia chinensis HOM05D004297 ORTHO05D005213 5.5e-73 278.1 191 69.6
Solyc01g094880.3 Solanum lycopersicum HOM05D004297 ORTHO05D005213 7.2e-73 277.7 194 69.1
QL04p054287 Quercus lobata HOM05D004297 ORTHO05D005213 1.2e-72 276.9 201 66.2
Sopen01g038660 Solanum pennellii HOM05D004297 ORTHO05D005213 1.2e-72 276.9 194 69.1
TAR636G0349 Trochodendron aralioides HOM05D004297 ORTHO05D005213 1.6e-72 276.6 189 67.2
MELO3C021189.2 Cucumis melo HOM05D004297 ORTHO05D005213 2.7e-72 275.8 190 67.4
Potri.002G162000 Populus trichocarpa HOM05D004297 ORTHO05D005213 2.7e-72 275.8 194 67.0
Sed0013986 Sechium edule HOM05D004297 ORTHO05D005213 2.7e-72 275.8 192 67.7
GSVIVG01026995001 Vitis vinifera HOM05D004297 ORTHO05D005213 4.6e-72 275.0 187 69.0
RcHm_v2.0_Chr7g0221211 Rosa chinensis HOM05D004297 ORTHO05D005213 6.1e-72 274.6 191 67.0
CANSAT56G3337 Cannabis sativa HOM05D004297 ORTHO05D005213 1.0e-71 273.9 189 68.8
Prupe.2G174200 Prunus persica HOM05D004297 ORTHO05D005213 3.9e-71 271.9 191 66.0
DCAR_006941 Daucus carota HOM05D004297 ORTHO05D005213 5.1e-71 271.6 194 66.0
ClCG06G003500 Citrullus lanatus HOM05D004297 ORTHO05D005213 1.1e-70 270.4 216 61.1
Migut.B01779 Erythranthe guttata HOM05D004297 ORTHO05D005213 1.5e-70 270.0 167 76.0
ECA236G0245 Erigeron canadensis HOM05D004297 ORTHO05D005213 3.3e-70 268.9 177 69.5
Lj1g0026001 Lotus japonicus HOM05D004297 ORTHO05D005213 3.3e-70 268.9 167 74.9
PSO063G5582 Papaver somniferum HOM05D004297 ORTHO05D005213 3.3e-70 268.9 189 65.6
Atru.chr5.535 Acer truncatum HOM05D004297 ORTHO05D005213 4.3e-70 268.5 195 64.1
HanXRQChr04g0121341 Helianthus annuus HOM05D004297 ORTHO05D005213 1.6e-69 266.5 177 67.2
Thecc.01G355600 Theobroma cacao HOM05D004297 ORTHO05D005213 2.2e-69 266.2 201 62.7
Medtr7g078170 Medicago truncatula HOM05D004297 ORTHO05D005213 2.8e-69 265.8 191 64.9
VMungo1383G1290 Vigna mungo HOM05D004297 ORTHO05D005213 3.7e-69 265.4 170 72.9
TAR629G2795 Trochodendron aralioides HOM05D004297 ORTHO05D005213 6.3e-69 264.6 205 59.5
Nn6g33322 Nelumbo nucifera HOM05D004297 ORTHO05D005213 1.1e-68 263.8 189 65.1
TPR.G37786 Trifolium pratense HOM05D004297 ORTHO05D005213 1.4e-68 263.5 191 64.4
Gorai.001G159200 Gossypium raimondii HOM05D004297 ORTHO05D005213 2.4e-68 262.7 191 63.9
Potri.014G087900 Populus trichocarpa HOM05D004297 ORTHO05D005213 2.4e-68 262.7 195 65.1
Sabra02G0129100 Salix brachista HOM05D004297 ORTHO05D005213 6.9e-68 261.2 195 65.1
SGA_v2.0_scaffold78G25411 Striga asiatica HOM05D004297 ORTHO05D005213 9.1e-68 260.8 175 69.1
TWI59G0377 Tripterygium wilfordii HOM05D004297 ORTHO05D005213 9.1e-68 260.8 170 72.9
Ah.05g180350 Amaranthus hybridus HOM05D004297 ORTHO05D005213 1.2e-67 260.4 206 66.0
Aqoxy5G04078 Aquilegia oxysepala HOM05D004297 ORTHO05D005213 1.2e-67 260.4 201 64.7
Gohir.A07G141200 Gossypium hirsutum HOM05D004297 ORTHO05D005213 1.2e-67 260.4 191 63.9
Oeu036598.1 Olea europaea HOM05D004297 ORTHO05D005213 1.2e-67 260.4 201 63.2
MSTRG.17286 Avicennia marina HOM05D004297 ORTHO05D005213 1.5e-67 260.0 198 64.6
Glyma.18G235800 Glycine max HOM05D004297 ORTHO05D005213 2.0e-67 259.6 167 71.3
Gohir.D07G146700 Gossypium hirsutum HOM05D004297 ORTHO05D005213 2.6e-67 259.2 191 63.9
Ciclev10018597m.g Citrus clementina HOM05D004297 ORTHO05D005213 4.5e-67 258.5 178 67.4
Duzib138G1153 Durio zibethinus HOM05D004297 ORTHO05D005213 7.7e-67 257.7 189 63.0
Glyma.09G256700 Glycine max HOM05D004297 ORTHO05D005213 7.7e-67 257.7 170 70.6
PGR042G3632 Punica granatum HOM05D004297 ORTHO05D005213 7.7e-67 257.7 167 71.9
Duzib133G0964 Durio zibethinus HOM05D004297 ORTHO05D005213 1.0e-66 257.3 170 68.2
Sabra14G0063700 Salix brachista HOM05D004297 ORTHO05D005213 1.0e-66 257.3 201 63.2
SalBow3G3037 Salvia bowleyana HOM05D004297 ORTHO05D005213 1.0e-66 257.3 177 67.2
COL.COLO4_12743 Corchorus olitorius HOM05D004297 ORTHO05D005213 1.7e-66 256.5 189 65.6
Lalb_Chr03g0038271 Lupinus albus HOM05D004297 ORTHO05D005213 1.7e-66 256.5 170 69.4
arahy.Tifrunner.gnm1.ann1.0F1BT2 Arachis hypogaea HOM05D004297 ORTHO05D005213 3.8e-66 255.4 170 69.4
arahy.Tifrunner.gnm1.ann1.553FBT Arachis hypogaea HOM05D004297 ORTHO05D005213 3.8e-66 255.4 170 69.4
SHI13402 Sapria himalayana HOM05D004297 ORTHO05D005213 5.0e-66 255.0 191 62.3
FvH4_5g28900 Fragaria vesca HOM05D004297 ORTHO05D005213 6.5e-66 254.6 171 68.4
FAN18G0188 Fragaria x ananassa HOM05D004297 ORTHO05D005213 6.5e-66 254.6 171 68.4
FAN13G2415 Fragaria x ananassa HOM05D004297 ORTHO05D005213 1.4e-65 253.4 171 67.8
Peaxi162Scf00020g01027 Petunia axillaris HOM05D004297 ORTHO05D005213 2.5e-65 252.7 199 63.8
Cc02_g38370 Coffea canephora HOM05D004297 ORTHO05D005213 3.2e-65 252.3 202 59.4
Eucgr.E00109 Eucalyptus grandis HOM05D004297 ORTHO05D005213 4.2e-65 251.9 206 59.2
Dinv32504 Davidia involucrata HOM05D004297 ORTHO05D005213 6.1e-64 248.1 191 63.4
THA.LOC104817308 Tarenaya hassleriana HOM05D004297 ORTHO05D005213 3.3e-62 242.3 178 63.5
AT5G28350 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 4.4e-62 241.9 189 62.4
Thhalv10005756m.g Eutrema salsugineum HOM05D004297 ORTHO05D005213 5.7e-62 241.5 189 61.9
unitig_749.g14347 Utricularia gibba HOM05D004297 ORTHO05D005213 9.7e-62 240.7 189 61.9
AL5G43780 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 8.2e-61 237.7 189 60.8
AL5G43840 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 8.2e-61 237.7 189 60.8
Nitab4.5_0000583g0330 Nicotiana tabacum HOM05D004297 ORTHO05D005213 8.2e-61 237.7 196 63.3
Nitab4.5_0006942g0020 Nicotiana tabacum HOM05D004297 ORTHO05D005213 8.2e-61 237.7 196 63.3
FAN08G3284 Fragaria x ananassa HOM05D004297 ORTHO05D005213 1.1e-60 237.3 172 65.7
Carub.0005s2817 Capsella rubella HOM05D004297 ORTHO05D005213 3.1e-60 235.7 189 61.4
Sp5g01920 Schrenkiella parvula HOM05D004297 ORTHO05D005213 4.1e-60 235.3 169 66.3
A09p53530 Brassica napus HOM05D004297 ORTHO05D005213 9.1e-60 234.2 195 60.0
BraA09t40777Z Brassica rapa HOM05D004297 ORTHO05D005213 9.1e-60 234.2 195 60.0
BcaC07g40648 Brassica carinata HOM05D004297 ORTHO05D005213 2.6e-59 232.6 195 60.0
C08p36360 Brassica napus HOM05D004297 ORTHO05D005213 2.6e-59 232.6 195 60.0
BolC8t51219H Brassica oleracea HOM05D004297 ORTHO05D005213 2.6e-59 232.6 195 60.0
ATR0661G292 Amborella trichopoda HOM05D004297 ORTHO05D005213 5.9e-59 231.5 208 53.4
BcaC07g42689 Brassica carinata HOM05D004297 ORTHO05D005213 7.7e-59 231.1 178 62.9
AT3G61480 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 1.0e-58 230.7 189 60.8
CDE04G2307 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 1.0e-58 230.7 169 63.3
Sed0025112 Sechium edule HOM05D004297 ORTHO05D005213 2.9e-58 229.2 192 58.3
HPP92_012694 Vanilla planifolia HOM05D004297 ORTHO05D005213 1.3e-50 203.8 173 56.6
Phvul.008G060200 Phaseolus vulgaris HOM05D004297 ORTHO05D005213 1.7e-45 186.8 120 71.7
Os02g0786000 Oryza sativa ssp. japonica HOM05D004297 ORTHO05D005213 4.5e-43 178.7 169 49.1
Zm00001eb192800 Zea mays HOM05D004297 ORTHO05D005213 1.0e-42 177.6 173 46.2
Zm00001eb257250 Zea mays HOM05D004297 ORTHO05D005213 6.5e-42 174.9 169 47.3
Rhsim07G0012700 Rhododendron simsii HOM05D004297 ORTHO05D005213 4.7e-40 168.7 337 35.3
Aa31LG1G27480 Aethionema arabicum HOM05D004297 ORTHO05D005213 1.2e-35 154.1 163 49.7
vmacro23481 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 2.0e-35 153.3 193 43.5
AagrBONN_evm.TU.Sc2ySwM_344.3204 Anthoceros agrestis HOM05D004297 ORTHO05D005213 2.8e-32 142.9 169 40.2
SEGI_01640 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 2.3e-26 123.2 85 63.5
Pp3c2_4880 Physcomitrium patens HOM05D004297 ORTHO05D005213 3.6e-24 115.9 169 37.3
Mapoly0027s0035 Marchantia polymorpha HOM05D004297 ORTHO05D005213 1.0e-23 114.4 164 34.8
Pp3c14_21590 Physcomitrium patens HOM05D004297 ORTHO05D005213 1.0e-23 114.4 169 36.7
SMO367G0176 Selaginella moellendorffii HOM05D004297 ORTHO05D005213 2.3e-23 113.2 162 36.4
AT5G28442 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 6.4e-21 105.1 74 68.9
CBR_g36279 Chara braunii HOM05D004297 ORTHO05D005213 8.3e-21 104.8 189 30.7
Hma1.2p1_0733F.1_g210090 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 5.0e-18 95.5 60 78.3
CARHR057240 Cardamine hirsuta HOM05D004297 ORTHO05D005213 8.6e-18 94.7 67 62.7
VMungo0464G0057 Vigna mungo HOM05D004297 ORTHO05D005213 1.8e-15 87.0 71 62.0
CSS0021987 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 2.3e-15 86.7 80 55.0
SEGI_39496 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 9.8e-14 81.3 82 43.9
Cre12.g506650 Chlamydomonas reinhardtii HOM05D004297 ORTHO05D005213 1.3e-13 80.9 209 25.4
Ah.05g180910 Amaranthus hybridus HOM05D000862 ORTHO05D000943 1.1e-12 77.8 49 77.6
MD01G1067900 Malus domestica HOM05D004297 ORTHO05D005213 3.0e-10 69.7 65 49.2
CSS0028965 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.9e-09 67.0 43 67.4
Cc02_g24300 Coffea canephora HOM05D004297 ORTHO05D005213 3.3e-09 66.2 68 44.1
Oeu039184.1 Olea europaea HOM05D004297 ORTHO05D005213 3.3e-09 66.2 52 57.7
Nn1g01614 Nelumbo nucifera HOM05D004297 ORTHO05D005213 7.5e-06 55.1 41 56.1


User provided reference genes

Program Settings