Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc23g0002720 Simmondsia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1750.3 866 100.0
Hund27256 Selenicereus undatus HOM05D004297 ORTHO05D005213 0.0e+00 1520.4 866 85.8
Dinv43843 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1505.7 863 85.5
Atru.chr5.535 Acer truncatum HOM05D004297 ORTHO05D005213 0.0e+00 1479.9 870 83.6
Manes.01G254400 Manihot esculenta HOM05D004297 ORTHO05D005213 0.0e+00 1472.2 870 83.1
Actinidia20884 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1471.4 870 83.0
Cc02_g38370 Coffea canephora HOM05D004297 ORTHO05D005213 0.0e+00 1469.9 864 83.3
Thecc.01G355600 Theobroma cacao HOM05D004297 ORTHO05D005213 0.0e+00 1469.5 870 83.0
RcHm_v2.0_Chr7g0221211 Rosa chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1468.8 872 82.6
Actinidia10047 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1466.8 872 82.7
GSVIVG01026995001 Vitis vinifera HOM05D004297 ORTHO05D005213 0.0e+00 1466.8 871 82.4
EL10Ac1g00379 Beta vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1465.3 864 82.9
TAR629G2795 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1464.9 871 82.1
FvH4_5g28900 Fragaria vesca HOM05D004297 ORTHO05D005213 0.0e+00 1463.7 872 82.1
Gorai.001G159200 Gossypium raimondii HOM05D004297 ORTHO05D005213 0.0e+00 1460.7 870 82.0
Prupe.2G174200 Prunus persica HOM05D004297 ORTHO05D005213 0.0e+00 1460.3 864 82.6
Potri.014G087900 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1459.9 869 83.0
Duzib133G0964 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1459.1 870 82.2
Gohir.A07G141200 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1458.7 870 82.0
QL04p054287 Quercus lobata HOM05D004297 ORTHO05D005213 0.0e+00 1457.2 879 81.3
Cfa003893 Carpinus fangiana HOM05D004297 ORTHO05D005213 0.0e+00 1456.0 870 82.3
Ciclev10018597m.g Citrus clementina HOM05D004297 ORTHO05D005213 0.0e+00 1456.0 865 82.8
FAN18G0188 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1455.3 883 81.1
FAN13G2415 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1454.9 883 81.1
Glyma.09G256700 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1452.2 867 83.0
CANSAT56G3337 Cannabis sativa HOM05D004297 ORTHO05D005213 0.0e+00 1451.0 870 82.1
Migut.B01779 Erythranthe guttata HOM05D004297 ORTHO05D005213 0.0e+00 1449.1 873 80.8
Eucgr.E00109 Eucalyptus grandis HOM05D004297 ORTHO05D005213 0.0e+00 1449.1 872 81.3
Nn6g33322 Nelumbo nucifera HOM05D004297 ORTHO05D005213 0.0e+00 1447.6 871 80.3
Cpa.g.sc11.37 Carica papaya HOM05D004297 ORTHO05D005213 0.0e+00 1446.4 842 84.1
PGR042G3632 Punica granatum HOM05D004297 ORTHO05D005213 0.0e+00 1446.4 872 81.8
Sopen01g038660 Solanum pennellii HOM05D004297 ORTHO05D005213 0.0e+00 1445.6 871 81.5
MSTRG.17286 Avicennia marina HOM05D004297 ORTHO05D005213 0.0e+00 1445.3 866 81.9
CiPaw.02G033500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1445.3 871 81.4
Lj9C586G6 Lonicera japonica HOM05D004297 ORTHO05D005213 0.0e+00 1445.3 867 81.5
Potri.002G162000 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1444.9 869 81.6
Glyma.18G235800 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1444.1 867 82.6
CAN.G78.102 Capsicum annuum HOM05D004297 ORTHO05D005213 0.0e+00 1443.7 873 81.4
Lalb_Chr03g0038271 Lupinus albus HOM05D004297 ORTHO05D005213 0.0e+00 1442.9 867 82.0
Oeu036598.1 Olea europaea HOM05D004297 ORTHO05D005213 0.0e+00 1442.6 894 79.8
Medtr7g078170 Medicago truncatula HOM05D004297 ORTHO05D005213 0.0e+00 1441.8 872 82.1
PSO063G5582 Papaver somniferum HOM05D004297 ORTHO05D005213 0.0e+00 1441.4 872 81.0
VMungo1383G1290 Vigna mungo HOM05D004297 ORTHO05D005213 0.0e+00 1440.2 869 81.2
Solyc01g094880.3 Solanum lycopersicum HOM05D004297 ORTHO05D005213 0.0e+00 1439.5 871 81.2
TWI59G0377 Tripterygium wilfordii HOM05D004297 ORTHO05D005213 0.0e+00 1437.9 873 81.7
Lj1g0026001 Lotus japonicus HOM05D004297 ORTHO05D005213 0.0e+00 1437.6 870 81.5
SalBow3G3037 Salvia bowleyana HOM05D004297 ORTHO05D005213 0.0e+00 1437.6 861 81.4
arahy.Tifrunner.gnm1.ann1.553FBT Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1434.9 872 81.8
arahy.Tifrunner.gnm1.ann1.0F1BT2 Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1433.3 870 81.8
Rhsim07G0012700 Rhododendron simsii HOM05D004297 ORTHO05D005213 0.0e+00 1432.5 919 78.7
Aqoxy5G04078 Aquilegia oxysepala HOM05D004297 ORTHO05D005213 0.0e+00 1430.6 871 80.8
Gohir.D07G146700 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1427.2 870 80.5
Phvul.008G060200 Phaseolus vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1426.4 872 80.7
CSS0008006 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 0.0e+00 1424.1 872 80.7
Sabra14G0063700 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1423.3 923 77.7
TPR.G37786 Trifolium pratense HOM05D004297 ORTHO05D005213 0.0e+00 1422.9 873 81.0
SGA_v2.0_scaffold78G25411 Striga asiatica HOM05D004297 ORTHO05D005213 0.0e+00 1418.3 872 79.5
CsaV3_6G000810 Cucumis sativus L. HOM05D004297 ORTHO05D005213 0.0e+00 1416.0 867 79.8
Nitab4.5_0006942g0020 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1415.6 906 77.7
Ca_00827_v3 Cicer arietinum L. HOM05D000005 ORTHO05D005213 0.0e+00 1414.1 843 82.7
Nitab4.5_0000583g0330 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1414.1 940 75.4
MELO3C021189.2 Cucumis melo HOM05D004297 ORTHO05D005213 0.0e+00 1413.3 867 79.8
Sed0013986 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1412.5 865 80.7
TAR636G0349 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1409.8 824 84.0
DCAR_006941 Daucus carota HOM05D004297 ORTHO05D005213 0.0e+00 1385.9 872 77.5
Peaxi162Scf00020g01027 Petunia axillaris HOM05D004297 ORTHO05D005213 0.0e+00 1385.9 823 82.4
ClCG06G003500 Citrullus lanatus HOM05D004297 ORTHO05D005213 0.0e+00 1384.8 909 76.0
THA.LOC104817308 Tarenaya hassleriana HOM05D004297 ORTHO05D005213 0.0e+00 1377.5 857 78.9
HanXRQChr04g0121341 Helianthus annuus HOM05D004297 ORTHO05D005213 0.0e+00 1376.3 873 77.9
Lsat_1_v5_gn_7_3220 Lactuca sativa HOM05D004297 ORTHO05D005213 0.0e+00 1370.9 871 78.1
ECA236G0245 Erigeron canadensis HOM05D004297 ORTHO05D005213 0.0e+00 1369.0 863 77.9
Thhalv10005756m.g Eutrema salsugineum HOM05D004297 ORTHO05D005213 0.0e+00 1357.8 861 77.5
Duzib138G1153 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1357.0 866 78.3
Psat3g107280 Pisum sativum HOM05D004297 ORTHO05D005213 0.0e+00 1354.3 829 81.3
AL5G43840 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1352.8 861 76.5
CARHR171820 Cardamine hirsuta HOM05D004297 ORTHO05D005213 0.0e+00 1352.0 854 77.0
Os02g0786000 Oryza sativa ssp. japonica HOM05D004297 ORTHO05D005213 0.0e+00 1350.5 864 76.4
AT3G61480 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1349.3 860 76.6
Hma1.2p1_0071F.1_g037770 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1347.0 789 83.0
C08p36360 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1339.3 865 75.8
BolC8t51219H Brassica oleracea HOM05D004297 ORTHO05D005213 0.0e+00 1339.3 865 75.8
Hma1.2p1_0071F.1_g037780 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1338.2 785 82.9
AT5G28350 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1337.4 860 76.3
Aa31LG1G27480 Aethionema arabicum HOM05D004297 ORTHO05D005213 0.0e+00 1337.0 867 76.0
Carub.0005s2817 Capsella rubella HOM05D004297 ORTHO05D005213 0.0e+00 1334.7 862 75.9
ATR0661G292 Amborella trichopoda HOM05D004297 ORTHO05D005213 0.0e+00 1332.0 866 75.3
Zm00001eb192800 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1332.0 866 75.6
Zm00001eb257250 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1329.3 865 75.4
Dinv32504 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1327.8 894 76.2
unitig_749.g14347 Utricularia gibba HOM05D004297 ORTHO05D005213 0.0e+00 1327.8 888 74.5
BraA09t40777Z Brassica rapa HOM05D004297 ORTHO05D005213 0.0e+00 1322.4 865 75.6
A09p53530 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1321.6 865 75.6
Sabra02G0129100 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1317.8 993 69.1
MD11G1239500 Malus domestica HOM05D004297 ORTHO05D005213 0.0e+00 1295.4 783 81.0
AUR62022597 Chenopodium quinoa HOM05D004297 ORTHO05D005213 0.0e+00 1273.5 908 72.5
Haze_15540 Corylus avellana HOM05D004297 ORTHO05D005213 0.0e+00 1259.6 870 73.3
vmacro13256 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 0.0e+00 1253.8 910 71.8
BcaC07g40648 Brassica carinata HOM05D004297 ORTHO05D005213 0.0e+00 1231.9 857 71.9
AL5G43780 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1149.0 851 69.2
CiPaw.01G064500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1130.5 685 80.9
Mapoly0027s0035 Marchantia polymorpha HOM05D004297 ORTHO05D005213 4.5e-286 988.0 874 57.3
Sed0025112 Sechium edule HOM05D004297 ORTHO05D005213 1.3e-285 986.5 870 60.8
SMO367G0176 Selaginella moellendorffii HOM05D004297 ORTHO05D005213 1.9e-268 929.5 859 55.2
Sp5g01920 Schrenkiella parvula HOM05D004297 ORTHO05D005213 1.1e-260 903.7 565 75.9
Pp3c2_4880 Physcomitrium patens HOM05D004297 ORTHO05D005213 2.5e-260 902.5 883 53.1
FAN08G3284 Fragaria x ananassa HOM05D004297 ORTHO05D005213 2.6e-257 892.5 527 80.8
CSS0030491 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 3.7e-248 862.1 585 75.2
COL.COLO4_12744 Corchorus olitorius HOM05D004297 ORTHO05D005213 3.0e-245 852.4 524 81.7
Pp3c14_21590 Physcomitrium patens HOM05D004297 ORTHO05D005213 3.1e-242 842.4 881 50.9
CBR_g36279 Chara braunii HOM05D004297 ORTHO05D005213 1.1e-231 807.4 1127 40.6
SHI13402 Sapria himalayana HOM05D004297 ORTHO05D005213 4.5e-217 758.8 1267 39.1
MD01G1067900 Malus domestica HOM05D004297 ORTHO05D005213 7.9e-214 748.0 548 68.8
Psat0ss4650g0200 Pisum sativum HOM05D004297 ORTHO05D005213 8.7e-205 718.0 568 65.1
CDE04G3641 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 5.5e-199 698.7 434 79.7
SEGI_29424 Sequoiadendron giganteum HOM05D004297 ORTHO05D000001 3.9e-181 639.4 420 70.5
CDE04G2307 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 1.3e-179 634.4 415 72.8
AUR62004390 Chenopodium quinoa HOM05D004297 ORTHO05D005213 5.2e-165 585.9 479 63.3
Oeu039184.1 Olea europaea HOM05D004297 ORTHO05D005213 5.7e-164 582.4 332 81.6
AUR62004391 Chenopodium quinoa HOM05D004297 ORTHO05D005213 6.1e-142 509.2 376 72.9
Psat7g148560 Pisum sativum HOM05D004297 ORTHO05D005213 3.3e-135 486.9 309 77.3
HPP92_012694 Vanilla planifolia HOM05D004297 ORTHO05D005213 6.8e-125 452.6 333 62.2
Peaxi162Scf41243g00005 Petunia axillaris HOM05D004297 ORTHO05D005213 3.7e-123 446.8 330 72.7
MCO14G315 Micromonas commoda HOM05D004297 ORTHO05D005213 3.4e-100 370.5 931 31.1
PRCOL_00000293 Prasinoderma coloniale HOM05D004297 ORTHO05D005213 9.9e-92 342.4 775 31.9
AagrBONN_evm.TU.Sc2ySwM_344.3195 Anthoceros agrestis HOM05D004297 ORTHO05D005213 1.6e-81 308.5 309 53.4
HPP92_012695 Vanilla planifolia HOM05D004297 ORTHO05D005213 3.1e-77 294.3 189 75.1
Cre12.g506650 Chlamydomonas reinhardtii HOM05D004297 ORTHO05D005213 5.3e-77 293.5 1027 25.3
HPP92_012670 Vanilla planifolia HOM05D004297 ORTHO05D005213 1.7e-75 288.5 229 67.7
MD01G1068000 Malus domestica HOM05D004297 ORTHO05D005213 2.4e-61 241.5 199 69.8
TAR629G3312 Trochodendron aralioides HOM05D004297 ORTHO05D005213 1.2e-57 229.2 212 58.0
BolC6t37919H Brassica oleracea HOM05D004297 ORTHO05D005213 3.0e-48 198.0 217 56.2
CSS0029755 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 5.2e-48 197.2 588 31.0
C06p27520 Brassica napus HOM05D004297 ORTHO05D005213 4.8e-46 190.7 217 53.0
COL.COLO4_12743 Corchorus olitorius HOM05D004297 ORTHO05D005213 4.1e-45 187.6 200 51.0
Lsat_1_v5_gn_9_9281 Lactuca sativa HOM05D004297 ORTHO05D005213 1.1e-42 179.5 363 39.7
Rhsim06G0128600 Rhododendron simsii HOM05D000263 ORTHO05D000213 2.7e-36 158.3 193 51.8
Cfa026409 Carpinus fangiana HOM05D004297 ORTHO05D005213 4.7e-33 147.5 722 23.1
MD11G1239400 Malus domestica HOM05D004297 ORTHO05D005213 5.2e-32 144.1 85 82.4
arahy.Tifrunner.gnm1.ann1.K3XHZI Arachis hypogaea HOM05D004297 ORTHO05D005213 4.4e-31 141.0 87 80.5
SEGI_34049 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 2.0e-28 132.1 85 77.6
Rhsim06G0126700 Rhododendron simsii HOM05D000263 ORTHO05D000213 2.1e-25 122.1 164 45.7
Cpa.g.sc11.39 Carica papaya HOM05D004297 ORTHO05D005213 2.2e-22 112.1 64 82.8
Rhsim12G0103300 Rhododendron simsii HOM05D004297 ORTHO05D339569 4.6e-20 104.4 161 39.8
RcHm_v2.0_Chr1g0356921 Rosa chinensis HOM05D004297 ORTHO05D005213 1.6e-17 95.9 64 70.3
CSS0014634 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 6.2e-17 94.0 150 42.7
RcHm_v2.0_Chr1g0356901 Rosa chinensis HOM05D004297 ORTHO05D005213 8.3e-14 83.6 94 51.1
Rhsim06G0128400 Rhododendron simsii HOM05D000263 ORTHO05D000213 4.1e-13 81.3 54 70.4
RcHm_v2.0_Chr1g0356891 Rosa chinensis HOM05D004297 ORTHO05D005213 7.0e-13 80.5 44 79.5
arahy.Tifrunner.gnm1.ann1.WWIQ7K Arachis hypogaea HOM05D004297 ORTHO05D005213 9.2e-13 80.1 59 69.5
Lsat_1_v5_gn_4_49241 Lactuca sativa HOM05D004297 ORTHO05D005213 5.6e-10 70.9 56 58.9
AagrBONN_evm.TU.Sc2ySwM_344.3204 Anthoceros agrestis HOM05D004297 ORTHO05D005213 7.3e-10 70.5 51 60.8
arahy.Tifrunner.gnm1.ann1.ABA0S6 Arachis hypogaea HOM05D004297 ORTHO05D005213 3.6e-09 68.2 48 70.8
RcHm_v2.0_Chr1g0356911 Rosa chinensis HOM05D004297 ORTHO05D005213 1.1e-08 66.6 34 79.4
SEGI_39496 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 1.8e-08 65.9 48 62.5
arahy.Tifrunner.gnm1.ann1.19V8U8 Arachis hypogaea HOM05D000005 ORTHO05D000012 2.3e-08 65.5 71 50.7
Cc02_g24300 Coffea canephora HOM05D004297 ORTHO05D005213 2.0e-07 62.4 48 62.5
vmacro23481 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 3.4e-07 61.6 42 71.4


User provided reference genes

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