Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc23g0002180 Simmondsia chinensis HOM05D003601 ORTHO05D004896 1.3e-64 249.6 125 100.0
Sc23g0002160 Simmondsia chinensis HOM05D003601 ORTHO05D004896 5.4e-15 84.7 91 56.0
Ah.01g018710 Amaranthus hybridus HOM05D003601 ORTHO05D004896 5.6e-12 74.7 89 50.6
Lj8C0T4 Lonicera japonica HOM05D003601 ORTHO05D004896 1.2e-11 73.6 96 46.9
Lj8C4T0 Lonicera japonica HOM05D003601 ORTHO05D004896 1.2e-11 73.6 96 46.9
CSS0034548 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 1.6e-11 73.2 97 47.4
GSVIVG01027082001 Vitis vinifera HOM05D003601 ORTHO05D004896 1.4e-10 70.1 94 47.9
Thhalv10009432m.g Eutrema salsugineum HOM05D003601 ORTHO05D004896 1.8e-10 69.7 88 46.6
Thecc.04G197100 Theobroma cacao HOM05D003601 ORTHO05D004896 2.3e-10 69.3 94 47.9
Rhsim07G0005200 Rhododendron simsii HOM05D003601 ORTHO05D004896 5.2e-10 68.2 94 43.6
Gorai.005G129300 Gossypium raimondii HOM05D003601 ORTHO05D004896 1.2e-09 67.0 91 48.4
EL10Ac5g12528 Beta vulgaris HOM05D003601 ORTHO05D004896 1.5e-09 66.6 95 46.3
Haze_15640 Corylus avellana HOM05D003601 ORTHO05D004896 1.5e-09 66.6 94 44.7
Lj1g0023495 Lotus japonicus HOM05D003601 ORTHO05D004896 1.5e-09 66.6 83 47.0
PGR042G1585 Punica granatum HOM05D003601 ORTHO05D004896 2.0e-09 66.2 96 44.8
QL04p075806 Quercus lobata HOM05D003601 ORTHO05D004896 2.0e-09 66.2 94 44.7
QL05p061139 Quercus lobata HOM05D003601 ORTHO05D004896 2.0e-09 66.2 94 44.7
Gohir.D02G113600 Gossypium hirsutum HOM05D003601 ORTHO05D004896 3.4e-09 65.5 91 47.3
Manes.02G115900 Manihot esculenta HOM05D003601 ORTHO05D004896 3.4e-09 65.5 95 44.2
Dinv32573 Davidia involucrata HOM05D003601 ORTHO05D004896 5.8e-09 64.7 94 41.5
Gohir.A03G095300 Gossypium hirsutum HOM05D003601 ORTHO05D004896 5.8e-09 64.7 91 46.2
ClCG08G004950 Citrullus lanatus HOM05D003601 ORTHO05D004896 9.9e-09 63.9 89 47.2
Psat3g020760 Pisum sativum HOM05D003601 ORTHO05D004896 9.9e-09 63.9 88 46.6
THA.LOC104812142 Tarenaya hassleriana HOM05D003601 ORTHO05D004896 9.9e-09 63.9 87 48.3
AL1G11100 Arabidopsis lyrata HOM05D003601 ORTHO05D004896 1.3e-08 63.5 86 47.7
Manes.07G071780 Manihot esculenta HOM05D003601 ORTHO05D004896 1.3e-08 63.5 95 44.2
QL01p016478 Quercus lobata HOM05D003601 ORTHO05D004896 1.3e-08 63.5 94 42.6
Aa31LG11G12300 Aethionema arabicum HOM05D003601 ORTHO05D004896 2.2e-08 62.8 87 47.1
Cpa.g.sc273.4 Carica papaya HOM05D003601 ORTHO05D004896 2.2e-08 62.8 92 43.5
Thecc.07G081100 Theobroma cacao HOM05D003601 ORTHO05D004896 2.2e-08 62.8 94 45.7
arahy.Tifrunner.gnm1.ann1.JS26LE Arachis hypogaea HOM05D003601 ORTHO05D004896 2.9e-08 62.4 89 46.1
BcaB03g13574 Brassica carinata HOM05D003601 ORTHO05D004896 2.9e-08 62.4 88 45.5
BolC5t28850H Brassica oleracea HOM05D003601 ORTHO05D004896 2.9e-08 62.4 89 44.9
Carub.0001s0088 Capsella rubella HOM05D003601 ORTHO05D004896 2.9e-08 62.4 87 46.0
Duzib151G0301 Durio zibethinus HOM05D003601 ORTHO05D004896 2.9e-08 62.4 92 43.5
Eucgr.L01590 Eucalyptus grandis HOM05D003601 ORTHO05D004896 2.9e-08 62.4 89 42.7
arahy.Tifrunner.gnm1.ann1.EN9PMD Arachis hypogaea HOM05D003601 ORTHO05D004896 4.9e-08 61.6 89 46.1
Glyma.05G210600 Glycine max HOM05D003601 ORTHO05D004896 4.9e-08 61.6 88 46.6
QL05p061428 Quercus lobata HOM05D003601 ORTHO05D004896 4.9e-08 61.6 94 42.6
BcaB03g13575 Brassica carinata HOM05D003601 ORTHO05D004896 6.4e-08 61.2 89 43.8
A10p00590 Brassica napus HOM05D003601 ORTHO05D004896 6.4e-08 61.2 117 36.8
C05p00620 Brassica napus HOM05D003601 ORTHO05D004896 6.4e-08 61.2 89 43.8
BraA10t42337Z Brassica rapa HOM05D003601 ORTHO05D004896 6.4e-08 61.2 89 43.8
Ciclev10021165m.g Citrus clementina HOM05D003601 ORTHO05D004896 1.1e-07 60.5 94 43.6
CsaV3_6G034170 Cucumis sativus L. HOM05D003601 ORTHO05D004896 1.1e-07 60.5 89 44.9
Sopen02g026770 Solanum pennellii HOM05D003601 ORTHO05D004896 1.1e-07 60.5 95 42.1
TWI59G1066 Tripterygium wilfordii HOM05D003601 ORTHO05D004896 1.1e-07 60.5 89 44.9
MELO3C010640.2 Cucumis melo HOM05D003601 ORTHO05D004896 1.9e-07 59.7 89 44.9
Sp1g00940 Schrenkiella parvula HOM05D003601 ORTHO05D004896 1.9e-07 59.7 87 43.7
Sed0004785 Sechium edule HOM05D003601 ORTHO05D004896 1.9e-07 59.7 89 44.9
unitig_0.g331 Utricularia gibba HOM05D003601 ORTHO05D004896 1.9e-07 59.7 95 42.1
VMungo0331G0886 Vigna mungo HOM05D003601 ORTHO05D004896 1.9e-07 59.7 86 46.5
Eucgr.D01238 Eucalyptus grandis HOM05D003601 ORTHO05D004896 2.4e-07 59.3 89 41.6
Potri.014G097300 Populus trichocarpa HOM05D003601 ORTHO05D004896 2.4e-07 59.3 92 43.5
Atru.chr5.650 Acer truncatum HOM05D003601 ORTHO05D004896 3.2e-07 58.9 94 42.6
COL.COLO4_20208 Corchorus olitorius HOM05D003601 ORTHO05D004896 3.2e-07 58.9 95 42.1
Glyma.03G025400 Glycine max HOM05D003601 ORTHO05D004896 3.2e-07 58.9 85 44.7
AT1G01350 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 4.1e-07 58.5 87 44.8
Hund16704 Selenicereus undatus HOM05D003601 ORTHO05D004896 4.1e-07 58.5 89 46.1
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 5.4e-07 58.2 88 44.3
vmacro23173 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 5.4e-07 58.2 94 40.4
PGSC0003DMG400013655 Solanum tuberosum HOM05D003601 ORTHO05D004896 9.2e-07 57.4 95 42.1
Peaxi162Scf01343g00152 Petunia axillaris HOM05D003601 ORTHO05D004896 1.2e-06 57.0 94 41.5
Sabra14G0071300 Salix brachista HOM05D003601 ORTHO05D004896 1.6e-06 56.6 92 42.4
ATR1127G077 Amborella trichopoda HOM05D003601 ORTHO05D004896 2.1e-06 56.2 97 42.3
SHI13229 Sapria himalayana HOM05D003601 ORTHO05D004896 2.1e-06 56.2 90 38.9
CARHR001090 Cardamine hirsuta HOM05D003601 ORTHO05D004896 2.7e-06 55.8 87 46.0
Nitab4.5_0000614g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 2.7e-06 55.8 94 41.5
Phvul.010G084000 Phaseolus vulgaris HOM05D003601 ORTHO05D004896 2.7e-06 55.8 89 43.8
AT5G06420 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 3.5e-06 55.5 84 44.0
Cc05_g04050 Coffea canephora HOM05D003601 ORTHO05D004896 3.5e-06 55.5 94 38.3
RcHm_v2.0_Chr3g0492261 Rosa chinensis HOM05D003601 ORTHO05D004896 3.5e-06 55.5 90 43.3
EL10Ac9g21625 Beta vulgaris HOM05D003601 ORTHO05D004896 6.0e-06 54.7 78 43.6
MD04G1169800 Malus domestica HOM05D003601 ORTHO05D004896 6.0e-06 54.7 85 43.5
Cfa003813 Carpinus fangiana HOM05D003601 ORTHO05D004896 7.8e-06 54.3 62 48.4


User provided reference genes

Program Settings