Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc23g0001870 Simmondsia chinensis HOM05D007943 ORTHO05D010047 2.6e-58 228.4 106 100.0
Hund16743 Selenicereus undatus HOM05D007943 ORTHO05D010047 2.6e-18 95.5 75 53.3
AUR62004549 Chenopodium quinoa HOM05D007943 ORTHO05D010047 2.4e-16 89.0 84 50.0
Duzib133G1419 Durio zibethinus HOM05D007943 ORTHO05D010047 2.4e-16 89.0 80 50.0
Prupe.2G195800 Prunus persica HOM05D007943 ORTHO05D010047 2.1e-15 85.9 73 53.4
FAN10G0207 Fragaria x ananassa HOM05D007943 ORTHO05D010047 4.6e-15 84.7 56 64.3
Gohir.A11G100000 Gossypium hirsutum HOM05D007943 ORTHO05D010047 7.8e-15 84.0 104 42.3
MD07G1157400 Malus domestica HOM05D007943 ORTHO05D010047 1.0e-14 83.6 57 57.9
MD01G1087200 Malus domestica HOM05D007943 ORTHO05D010047 1.7e-14 82.8 72 52.8
FAN10G1708 Fragaria x ananassa HOM05D007943 ORTHO05D010047 3.0e-14 82.0 56 62.5
Gohir.D11G104700 Gossypium hirsutum HOM05D007943 ORTHO05D010047 3.0e-14 82.0 105 42.9
FvH4_7g17420 Fragaria vesca HOM05D007943 ORTHO05D010047 3.9e-14 81.6 56 62.5
FAN01G2944 Fragaria x ananassa HOM05D007943 ORTHO05D010047 3.9e-14 81.6 56 62.5
FAN06G1823 Fragaria x ananassa HOM05D007943 ORTHO05D010047 3.9e-14 81.6 56 62.5
Gorai.007G112000 Gossypium raimondii HOM05D007943 ORTHO05D010047 3.9e-14 81.6 78 50.0
RcHm_v2.0_Chr1g0360861 Rosa chinensis HOM05D007943 ORTHO05D010047 6.6e-14 80.9 56 62.5
FAN03G2903 Fragaria x ananassa HOM05D007943 ORTHO05D010047 1.9e-13 79.3 56 60.7
CSS0001750 Camellia sinensis var. sinensis HOM05D007943 ORTHO05D010047 3.3e-13 78.6 109 37.6
CiPaw.01G081100 Carya illinoinensis HOM05D007943 ORTHO05D010047 4.3e-13 78.2 95 42.1
Lalb_Chr10g0100821 Lupinus albus HOM05D007943 ORTHO05D010047 4.3e-13 78.2 74 48.6
Thecc.01G335100 Theobroma cacao HOM05D007943 ORTHO05D010047 1.2e-12 76.6 69 47.8
Glyma.16G020300 Glycine max HOM05D007943 ORTHO05D010047 1.6e-12 76.3 97 40.2
TAR629G3284 Trochodendron aralioides HOM05D007943 ORTHO05D010047 2.1e-12 75.9 52 59.6
Phvul.006G116500 Phaseolus vulgaris HOM05D007943 ORTHO05D010047 2.8e-12 75.5 101 39.6
Potri.014G104100 Populus trichocarpa HOM05D007943 ORTHO05D010047 2.8e-12 75.5 63 52.4
GSVIVG01027420001 Vitis vinifera HOM05D007943 ORTHO05D010047 2.8e-12 75.5 60 50.0
Glyma.07G051200 Glycine max HOM05D007943 ORTHO05D010047 6.2e-12 74.3 74 47.3
Gohir.D07G139100 Gossypium hirsutum HOM05D007943 ORTHO05D010047 6.2e-12 74.3 74 47.3
Gorai.001G151200 Gossypium raimondii HOM05D007943 ORTHO05D010047 6.2e-12 74.3 74 47.3
Oeu042966.1 Olea europaea HOM05D007943 ORTHO05D010047 1.1e-11 73.6 71 45.1
Ciclev10022962m.g Citrus clementina HOM05D007943 ORTHO05D010047 1.4e-11 73.2 74 43.2
Nn3g18838 Nelumbo nucifera HOM05D007943 ORTHO05D010047 1.8e-11 72.8 61 52.5
Potri.002G177700 Populus trichocarpa HOM05D007943 ORTHO05D010047 2.3e-11 72.4 68 48.5
TPR.G25267 Trifolium pratense HOM05D007943 ORTHO05D010047 2.3e-11 72.4 73 46.6
COL.COLO4_06217 Corchorus olitorius HOM05D007943 ORTHO05D010047 3.1e-11 72.0 77 42.9
Gohir.A07G134500 Gossypium hirsutum HOM05D007943 ORTHO05D010047 3.1e-11 72.0 71 47.9
QL08p046777 Quercus lobata HOM05D007943 ORTHO05D010047 3.1e-11 72.0 70 48.6
Lj3g0013373 Lotus japonicus HOM05D007943 ORTHO05D010047 5.2e-11 71.2 100 38.0
CSS0046577 Camellia sinensis var. sinensis HOM05D007943 ORTHO05D010047 1.2e-10 70.1 86 39.5
Glyma.03G260100 Glycine max HOM05D007943 ORTHO05D010047 1.2e-10 70.1 100 39.0
Medtr8g024630 Medicago truncatula HOM05D007943 ORTHO05D010047 1.2e-10 70.1 102 37.3
Cfa003750 Carpinus fangiana HOM05D007943 ORTHO05D010047 1.5e-10 69.7 52 55.8
Psat4g217240 Pisum sativum HOM05D007943 ORTHO05D010047 1.5e-10 69.7 75 45.3
Glyma.19G259000 Glycine max HOM05D007943 ORTHO05D010047 2.6e-10 68.9 81 42.0
TPR.G4732 Trifolium pratense HOM05D007943 ORTHO05D010047 2.6e-10 68.9 85 44.7
Sabra02G0135900 Salix brachista HOM05D007943 ORTHO05D010047 3.4e-10 68.6 52 55.8
HPP92_015077 Vanilla planifolia HOM05D000968 ORTHO05D001687 3.4e-10 68.6 56 51.8
Atru.chr5.749 Acer truncatum HOM05D007943 ORTHO05D010047 4.4e-10 68.2 60 48.3
arahy.Tifrunner.gnm1.ann1.FJCJ23 Arachis hypogaea HOM05D007943 ORTHO05D010047 4.4e-10 68.2 73 42.5
Lalb_Chr02g0157681 Lupinus albus HOM05D007943 ORTHO05D010047 4.4e-10 68.2 83 39.8
Zm00001eb073340 Zea mays HOM05D007943 ORTHO05D010047 7.6e-10 67.4 68 39.7
Haze_15717 Corylus avellana HOM05D007943 ORTHO05D010047 1.3e-09 66.6 52 53.8
TAR375G0647 Trochodendron aralioides HOM05D007943 ORTHO05D010047 2.9e-09 65.5 71 43.7
Manes.01G241300 Manihot esculenta HOM05D007943 ORTHO05D010047 6.4e-09 64.3 70 44.3
Manes.05G017800 Manihot esculenta HOM05D007943 ORTHO05D010047 8.4e-09 63.9 75 37.3
Phvul.010G118200 Phaseolus vulgaris HOM05D007943 ORTHO05D010047 1.1e-08 63.5 82 39.0
Rhsim01G0178600 Rhododendron simsii HOM05D007943 ORTHO05D010047 1.1e-08 63.5 77 39.0
Aqoxy7G00012 Aquilegia oxysepala HOM05D007943 ORTHO05D010047 1.9e-08 62.8 89 38.2
DCAR_006654 Daucus carota HOM05D007943 ORTHO05D010047 4.1e-08 61.6 53 45.3
Os04g0577375 Oryza sativa ssp. japonica HOM05D007943 ORTHO05D010047 7.1e-08 60.8 64 39.1
AL1G11360 Arabidopsis lyrata HOM05D007943 ORTHO05D010047 1.6e-07 59.7 70 38.6
Os03g0126900 Oryza sativa ssp. japonica HOM05D007943 ORTHO05D010047 1.6e-07 59.7 47 48.9
Carub.0001s0107 Capsella rubella HOM05D007943 ORTHO05D010047 7.8e-07 57.4 56 42.9
CsaV3_3G007710 Cucumis sativus L. HOM05D007943 ORTHO05D010047 7.8e-07 57.4 80 33.8
Os03g0315200 Oryza sativa ssp. japonica HOM05D007943 ORTHO05D010047 7.8e-07 57.4 52 40.4
BolC8t52866H Brassica oleracea HOM05D007943 ORTHO05D010047 1.7e-06 56.2 63 38.1
CsaV3_3G007690 Cucumis sativus L. HOM05D007943 ORTHO05D010047 3.0e-06 55.5 78 32.1
Solyc10g009260.1 Solanum lycopersicum HOM05D007943 ORTHO05D010047 5.1e-06 54.7 43 48.8
MELO3C005988.2 Cucumis melo HOM05D007943 ORTHO05D010047 8.6e-06 53.9 73 32.9


User provided reference genes

Program Settings