Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc23g0001560 Simmondsia chinensis HOM05D004969 ORTHO05D006085 3.4e-221 771.5 439 100.0
TAR381G0816 Trochodendron aralioides HOM05D004969 ORTHO05D006085 1.3e-119 434.1 452 55.5
Gorai.001G088300 Gossypium raimondii HOM05D004969 ORTHO05D006085 8.5e-116 421.4 368 69.3
CSS0003565 Camellia sinensis var. sinensis HOM05D004969 ORTHO05D006085 2.5e-115 419.9 455 56.5
Gohir.A07G077900 Gossypium hirsutum HOM05D004969 ORTHO05D006085 2.5e-115 419.9 368 68.5
MBI06_g36481_MAGBIO Magnolia biondii HOM05D004969 ORTHO05D006085 7.2e-115 418.3 447 57.7
Actinidia23029 Actinidia chinensis HOM05D004969 ORTHO05D006085 3.6e-114 416.0 454 57.0
CSS0028019 Camellia sinensis var. sinensis HOM05D004969 ORTHO05D006085 8.0e-114 414.8 455 56.0
Migut.N03359 Erythranthe guttata HOM05D004969 ORTHO05D006085 1.0e-113 414.5 447 54.8
GSVIVG01025999001 Vitis vinifera HOM05D004969 ORTHO05D006085 2.6e-112 409.8 453 57.6
Duzib133G0278 Durio zibethinus HOM05D004969 ORTHO05D006085 9.8e-112 407.9 367 67.6
Ca_15098_v3 Cicer arietinum L. HOM05D004969 ORTHO05D006085 3.7e-111 406.0 445 60.9
Cpa.g.sc116.57 Carica papaya HOM05D004969 ORTHO05D006085 4.8e-111 405.6 453 57.6
Peaxi162Scf00391g00434 Petunia axillaris HOM05D004969 ORTHO05D006085 1.1e-110 404.4 445 54.8
Glyma.18G048200 Glycine max HOM05D004969 ORTHO05D006085 2.4e-110 403.3 444 62.8
Solyc11g020300.2 Solanum lycopersicum HOM05D004969 ORTHO05D006085 2.4e-110 403.3 451 56.8
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 4.1e-110 402.5 368 69.0
Glyma.11G202700 Glycine max HOM05D004969 ORTHO05D006085 4.1e-110 402.5 444 61.9
MSTRG.22462 Avicennia marina HOM05D004969 ORTHO05D006085 5.4e-110 402.1 450 53.3
CAN.G2.7 Capsicum annuum HOM05D004969 ORTHO05D006085 5.4e-110 402.1 452 55.8
Phvul.006G083300 Phaseolus vulgaris HOM05D004969 ORTHO05D006085 7.0e-110 401.7 445 54.8
Thecc.04G114600 Theobroma cacao HOM05D004969 ORTHO05D006085 9.1e-110 401.4 364 71.4
Aqoxy2G02250 Aquilegia oxysepala HOM05D004969 ORTHO05D006085 1.2e-109 401.0 379 62.5
VMungo0540G2242 Vigna mungo HOM05D004969 ORTHO05D006085 3.5e-109 399.4 445 53.9
Duzib211G0057 Durio zibethinus HOM05D004969 ORTHO05D006085 4.5e-109 399.1 363 67.5
MD02G1235900 Malus domestica HOM05D004969 ORTHO05D006085 1.0e-108 397.9 388 57.0
Nn5g27434 Nelumbo nucifera HOM05D004969 ORTHO05D006085 1.3e-108 397.5 454 60.8
Nitab4.5_0003818g0050 Nicotiana tabacum HOM05D004969 ORTHO05D006085 1.3e-108 397.5 470 54.7
Cc10_g11320 Coffea canephora HOM05D004969 ORTHO05D006085 2.9e-108 396.4 448 59.4
Manes.02G076800 Manihot esculenta HOM05D004969 ORTHO05D006085 6.6e-108 395.2 474 54.2
MD07G1079600 Malus domestica HOM05D004969 ORTHO05D006085 3.3e-107 392.9 393 56.0
Medtr3g063200 Medicago truncatula HOM05D004969 ORTHO05D006085 1.2e-106 391.0 447 61.1
Nitab4.5_0000365g0150 Nicotiana tabacum HOM05D004969 ORTHO05D006085 1.2e-106 391.0 460 53.9
Sopen11g010590 Solanum pennellii HOM05D004969 ORTHO05D006085 1.2e-106 391.0 437 56.3
Prupe.2G102700 Prunus persica HOM05D004969 ORTHO05D006085 1.6e-106 390.6 468 51.5
TWI77G0063 Tripterygium wilfordii HOM05D004969 ORTHO05D006085 2.1e-106 390.2 463 54.4
Lj6g0017586 Lotus japonicus HOM05D004969 ORTHO05D006085 2.8e-106 389.8 362 61.9
Lalb_Chr15g0085491 Lupinus albus HOM05D004969 ORTHO05D006085 6.1e-106 388.7 363 61.7
Lalb_Chr18g0053961 Lupinus albus HOM05D004969 ORTHO05D006085 4.0e-105 386.0 448 53.1
TWI53G0342 Tripterygium wilfordii HOM05D004969 ORTHO05D006085 4.0e-105 386.0 463 49.9
Potri.004G087100 Populus trichocarpa HOM05D004969 ORTHO05D006085 6.8e-105 385.2 464 52.2
HanXRQChr02g0036761 Helianthus annuus HOM05D004969 ORTHO05D006085 8.9e-105 384.8 463 53.1
FvH4_7g07530 Fragaria vesca HOM05D004969 ORTHO05D006085 1.7e-103 380.6 423 54.1
RcHm_v2.0_Chr1g0339281 Rosa chinensis HOM05D004969 ORTHO05D006085 1.1e-102 377.9 450 51.8
Dinv41780 Davidia involucrata HOM05D004969 ORTHO05D006085 5.4e-102 375.6 421 54.2
HanXRQChr04g0102091 Helianthus annuus HOM05D004969 ORTHO05D006085 1.2e-101 374.4 461 53.8
Sed0015915 Sechium edule HOM05D004969 ORTHO05D006085 1.6e-101 374.0 368 57.3
PGR042G0690 Punica granatum HOM05D004969 ORTHO05D006085 4.5e-101 372.5 364 58.2
CDE04G1977 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 5.9e-101 372.1 453 50.1
Eucgr.A02100 Eucalyptus grandis HOM05D004969 ORTHO05D006085 5.9e-101 372.1 378 57.7
Ciclev10011792m.g Citrus clementina HOM05D004969 ORTHO05D006085 1.0e-100 371.3 451 51.0
PSO170G6732 Papaver somniferum HOM05D004969 ORTHO05D006085 5.0e-100 369.0 460 50.4
Cfa005580 Carpinus fangiana HOM05D004969 ORTHO05D006085 6.6e-100 368.6 403 52.4
CsaV3_5G020190 Cucumis sativus L. HOM05D004969 ORTHO05D006085 8.6e-100 368.2 445 51.2
Rhsim12G0005600 Rhododendron simsii HOM05D004969 ORTHO05D006085 4.3e-99 365.9 506 50.8
MELO3C025065.2 Cucumis melo HOM05D004969 ORTHO05D006085 5.6e-99 365.5 442 50.9
Potri.017G129800 Populus trichocarpa HOM05D004969 ORTHO05D006085 7.3e-99 365.2 448 51.3
CANSAT78G2392 Cannabis sativa HOM05D004969 ORTHO05D006085 1.2e-98 364.4 444 51.8
ECA247G1475 Erigeron canadensis HOM05D004969 ORTHO05D006085 1.2e-98 364.4 419 56.1
PSO017G0293 Papaver somniferum HOM05D004969 ORTHO05D006085 1.2e-98 364.4 461 50.1
Psat5g144880 Pisum sativum HOM05D004969 ORTHO05D006085 1.6e-98 364.0 448 56.9
CiPaw.06G151300 Carya illinoinensis HOM05D004969 ORTHO05D006085 2.8e-98 363.2 378 52.6
Thhalv10013528m.g Eutrema salsugineum HOM05D004969 ORTHO05D006085 2.8e-98 363.2 430 58.4
Sp6g27550 Schrenkiella parvula HOM05D004969 ORTHO05D006085 6.8e-97 358.6 467 58.0
Carub.0006s1483 Capsella rubella HOM05D004969 ORTHO05D006085 1.2e-96 357.8 477 53.7
A10p22590 Brassica napus HOM05D004969 ORTHO05D006085 5.8e-96 355.5 471 53.9
BraA10t44321Z Brassica rapa HOM05D004969 ORTHO05D006085 5.8e-96 355.5 471 53.9
FAN03G1223 Fragaria x ananassa HOM05D004969 ORTHO05D006085 7.5e-96 355.1 423 52.2
ATR1136G165 Amborella trichopoda HOM05D004969 ORTHO05D006085 9.8e-96 354.8 433 51.3
THA.LOC104827189 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 1.4e-94 350.9 461 50.1
BolC2t06766H Brassica oleracea HOM05D004969 ORTHO05D006085 5.4e-94 349.0 469 55.4
Gohir.D07G082700 Gossypium hirsutum HOM05D004969 ORTHO05D006085 9.2e-94 348.2 315 65.4
BraA02t05337Z Brassica rapa HOM05D004969 ORTHO05D006085 2.7e-93 346.7 473 55.0
Lsat_1_v5_gn_1_25461 Lactuca sativa HOM05D004969 ORTHO05D006085 5.0e-92 342.4 449 50.1
Sabra17G0108000 Salix brachista HOM05D004969 ORTHO05D006085 1.1e-91 341.3 415 50.4
THA.LOC104802933 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 6.8e-89 332.0 459 53.6
Hma1.2p1_0342F.1_g130660 Hydrangea macrophylla HOM05D004969 ORTHO05D006085 8.9e-89 331.6 316 65.2
HPP92_004464 Vanilla planifolia HOM05D004969 ORTHO05D006085 5.8e-88 328.9 449 46.1
AUR62023559 Chenopodium quinoa HOM05D004969 ORTHO05D006085 1.1e-86 324.7 452 54.2
BolC9t58883H Brassica oleracea HOM05D004969 ORTHO05D006085 4.1e-86 322.8 465 46.2
Zm00001eb082230 Zea mays HOM05D004969 ORTHO05D006085 7.8e-85 318.5 385 50.1
Os04g0439900 Oryza sativa ssp. japonica HOM05D004969 ORTHO05D006085 1.3e-84 317.8 385 49.1
BcaB08g36833 Brassica carinata HOM05D004969 ORTHO05D006085 1.7e-84 317.4 359 59.1
BcaC03g18507 Brassica carinata HOM05D006375 ORTHO05D008188 6.6e-84 315.5 440 54.8
A02p03690 Brassica napus HOM05D006375 ORTHO05D008188 6.6e-84 315.5 460 53.7
C09p60500 Brassica napus HOM05D004969 ORTHO05D006085 1.1e-83 314.7 467 45.8
unitig_8.g3641 Utricularia gibba HOM05D004969 ORTHO05D006085 1.9e-83 313.9 449 46.5
CiPaw.05G038800 Carya illinoinensis HOM05D004969 ORTHO05D006085 3.3e-83 313.2 398 52.0
Mapoly0007s0079 Marchantia polymorpha HOM05D004969 ORTHO05D006085 5.6e-83 312.4 463 46.0
PGSC0003DMG400023281 Solanum tuberosum HOM05D004969 ORTHO05D006085 5.6e-83 312.4 304 62.2
Hund27125 Selenicereus undatus HOM05D004969 ORTHO05D006085 9.5e-83 311.6 587 39.5
Hund27130 Selenicereus undatus HOM05D004969 ORTHO05D006085 9.5e-83 311.6 587 39.5
AL6G27590 Arabidopsis lyrata HOM05D004969 ORTHO05D006085 1.6e-82 310.8 461 53.6
AT5G16620 Arabidopsis thaliana HOM05D004969 ORTHO05D006085 1.6e-82 310.8 461 53.4
arahy.Tifrunner.gnm1.ann1.70N71I Arachis hypogaea HOM05D004969 ORTHO05D006085 1.6e-82 310.8 330 62.1
HPP92_004490 Vanilla planifolia HOM05D004969 ORTHO05D006085 3.6e-82 309.7 455 44.4
C02p08510 Brassica napus HOM05D006375 ORTHO05D008188 4.7e-82 309.3 457 53.8
Aa31LG11G13030 Aethionema arabicum HOM05D004969 ORTHO05D006085 1.2e-80 304.7 464 52.4
ClCG01G008270 Citrullus lanatus HOM05D004969 ORTHO05D006085 2.0e-80 303.9 456 46.7
DCAR_014392 Daucus carota HOM05D004969 ORTHO05D006085 1.1e-78 298.1 435 45.1
SEGI_27085 Sequoiadendron giganteum HOM05D004969 ORTHO05D006085 1.1e-78 298.1 362 49.4
Atru.chr1.1922 Acer truncatum HOM05D004969 ORTHO05D006085 2.4e-78 297.0 320 54.7
SGA_v2.0_scaffold25G11066 Striga asiatica HOM05D004969 ORTHO05D007712 3.5e-77 293.1 286 57.0
MSTRG.1535 Avicennia marina HOM05D004969 ORTHO05D006085 4.6e-77 292.7 448 44.6
FAN06G2886 Fragaria x ananassa HOM05D004969 ORTHO05D006085 4.6e-77 292.7 429 47.1
FAN10G2597 Fragaria x ananassa HOM05D004969 ORTHO05D006085 1.0e-76 291.6 431 45.9
vmacro00973 Vaccinium macrocarpon HOM05D004969 ORTHO05D006085 5.6e-75 285.8 633 36.2
Pp3c4_25740 Physcomitrium patens HOM05D004969 ORTHO05D006085 9.6e-75 285.0 408 48.0
CARHR196580 Cardamine hirsuta HOM05D004969 ORTHO05D006085 2.1e-74 283.9 319 56.7
Oeu064082.1 Olea europaea HOM05D004969 ORTHO05D006085 4.7e-74 282.7 307 59.9
Pp3c26_4000 Physcomitrium patens HOM05D004969 ORTHO05D006085 6.2e-74 282.3 366 53.3
arahy.Tifrunner.gnm1.ann1.247CUK Arachis hypogaea HOM05D004969 ORTHO05D006085 2.1e-66 257.3 313 60.7
Hund16770 Selenicereus undatus HOM05D004969 ORTHO05D006085 6.2e-66 255.8 219 64.4
Zm00001eb422870 Zea mays HOM05D004969 ORTHO05D006085 2.4e-65 253.8 448 42.4
Sabra04G0058000 Salix brachista HOM05D004969 ORTHO05D006085 1.2e-64 251.5 215 63.3
CDE07G1303 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 7.6e-64 248.8 387 42.4
QL11p019695 Quercus lobata HOM05D004969 ORTHO05D006085 2.9e-63 246.9 495 40.0
AagrBONN_evm.TU.Sc2ySwM_362.1764 Anthoceros agrestis HOM05D004969 ORTHO05D006085 6.4e-63 245.7 361 46.3
SMO367G0370 Selaginella moellendorffii HOM05D004969 ORTHO05D006085 1.3e-55 221.5 375 44.5
CBR_g49427 Chara braunii HOM05D004969 ORTHO05D006085 3.5e-53 213.4 221 54.3
Gohir.A07G173560 Gossypium hirsutum HOM05D004969 ORTHO05D006085 6.9e-49 199.1 119 84.0
TPR.G37348 Trifolium pratense HOM05D004969 ORTHO05D006085 1.5e-48 198.0 315 54.6
MBI06_g45016_MAGBIO Magnolia biondii HOM05D004969 ORTHO05D006085 6.5e-47 192.6 315 47.6
HanXRQChr02g0036751 Helianthus annuus HOM05D004969 ORTHO05D006085 5.5e-46 189.5 282 44.3
EL10Ac1g00146 Beta vulgaris HOM05D004969 ORTHO05D006085 2.7e-45 187.2 391 41.9
HanXRQChr02g0036561 Helianthus annuus HOM05D004969 ORTHO05D006085 1.1e-43 181.8 330 37.6
TPR.G14671 Trifolium pratense HOM05D004969 ORTHO05D006085 9.6e-43 178.7 102 83.3
Cre12.g508000 Chlamydomonas reinhardtii HOM05D004969 ORTHO05D006085 1.3e-34 151.8 171 43.9
Hund31138 Selenicereus undatus HOM05D004969 ORTHO05D006085 4.8e-34 149.8 174 52.3
Hund16636 Selenicereus undatus HOM05D004969 ORTHO05D006085 1.2e-32 145.2 174 51.1
MCO11G221 Micromonas commoda HOM05D004969 ORTHO05D006085 1.0e-28 132.1 150 44.0
FAN01G1532 Fragaria x ananassa HOM05D004969 ORTHO05D006085 1.1e-27 128.6 291 38.1
CDE07G1829 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 7.4e-27 125.9 67 89.6
THA.LOC104802935 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 8.5e-23 112.5 331 42.3
FAN15G1524 Fragaria x ananassa HOM05D004969 ORTHO05D006085 9.4e-22 109.0 74 74.3
AUR62004590 Chenopodium quinoa HOM05D004969 ORTHO05D006085 3.0e-20 104.0 198 38.9
Sabra04G0057900 Salix brachista HOM05D004969 ORTHO05D006085 2.6e-19 100.9 137 46.0
FvH4_2g09382 Fragaria vesca HOM05D004969 ORTHO05D006085 2.2e-18 97.8 153 44.4
MELO3C025953.2 Cucumis melo HOM05D004969 ORTHO05D006085 8.2e-18 95.9 64 71.9
Oeu000537.1 Olea europaea HOM05D004969 ORTHO05D006085 8.2e-18 95.9 69 71.0
Hund14746 Selenicereus undatus HOM05D004969 ORTHO05D006085 2.2e-15 87.8 51 78.4
SHI30104 Sapria himalayana HOM05D007291 ORTHO05D009038 2.2e-10 71.2 67 49.3
FvH4_2g09383 Fragaria vesca HOM05D004969 ORTHO05D006085 1.4e-09 68.6 47 66.0
Cre12.g490650 Chlamydomonas reinhardtii HOM05D004969 ORTHO05D006085 2.4e-09 67.8 168 26.8
MD02G1236200 Malus domestica HOM05D005192 ORTHO05D006023 2.4e-09 67.8 54 57.4
HPP92_017745 Vanilla planifolia HOM05D004969 ORTHO05D006085 1.6e-08 65.1 130 33.1
CARHR196590 Cardamine hirsuta HOM05D004969 ORTHO05D006085 2.2e-07 61.2 146 37.0
MELO3C033346.2 Cucumis melo HOM05D004969 ORTHO05D044988 5.0e-07 60.1 52 57.7
Gohir.A07G173840 Gossypium hirsutum HOM05D004969 ORTHO05D006085 4.2e-06 57.0 132 37.9


User provided reference genes

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