Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc23g0000730 Simmondsia chinensis HOM05D004967 ORTHO05D006146 2.1e-129 465.7 239 100.0
Hund16853 Selenicereus undatus HOM05D004967 ORTHO05D006146 9.2e-72 274.2 213 67.1
Cfa016003 Carpinus fangiana HOM05D004967 ORTHO05D006146 8.9e-67 257.7 196 63.8
Ciclev10002109m.g Citrus clementina HOM05D004967 ORTHO05D006146 1.5e-66 256.9 205 64.9
Haze_00459 Corylus avellana HOM05D004967 ORTHO05D006146 2.0e-66 256.5 196 62.8
Dinv40417 Davidia involucrata HOM05D004967 ORTHO05D006146 2.0e-66 256.5 211 66.4
AUR62027891 Chenopodium quinoa HOM05D004967 ORTHO05D006146 2.6e-66 256.1 200 61.0
CSS0022408 Camellia sinensis var. sinensis HOM05D004967 ORTHO05D006146 5.8e-66 255.0 194 67.5
Ah.05g170880 Amaranthus hybridus HOM05D004967 ORTHO05D006146 1.4e-64 250.4 197 61.9
Dinv07242 Davidia involucrata HOM05D004967 ORTHO05D006146 1.9e-64 250.0 211 65.4
MD15G1351500 Malus domestica HOM05D004967 ORTHO05D006146 3.2e-64 249.2 194 62.4
Potri.005G176500 Populus trichocarpa HOM05D004967 ORTHO05D006146 4.1e-64 248.8 199 61.8
TWI12G0727 Tripterygium wilfordii HOM05D004967 ORTHO05D006146 2.7e-63 246.1 204 60.8
CSS0015935 Camellia sinensis var. sinensis HOM05D004967 ORTHO05D006146 3.5e-63 245.7 194 67.0
MD08G1165700 Malus domestica HOM05D004967 ORTHO05D006146 3.5e-63 245.7 194 61.9
EL10Ac1g01046 Beta vulgaris HOM05D004967 ORTHO05D006146 1.3e-62 243.8 197 61.4
Manes.02G162100 Manihot esculenta HOM05D004967 ORTHO05D006146 1.3e-62 243.8 201 65.7
Hund27025 Selenicereus undatus HOM05D004967 ORTHO05D006146 1.3e-62 243.8 203 65.5
CANSAT54G0493 Cannabis sativa HOM05D004967 ORTHO05D006146 3.9e-62 242.3 195 63.1
Rhsim06G0104700 Rhododendron simsii HOM05D004967 ORTHO05D006146 5.0e-62 241.9 189 67.2
QL09p035340 Quercus lobata HOM05D004967 ORTHO05D006146 6.6e-62 241.5 194 67.5
CSS0002296 Camellia sinensis var. sinensis HOM05D004967 ORTHO05D006146 8.6e-62 241.1 191 66.5
CAN.G792.65 Capsicum annuum HOM05D004967 ORTHO05D006146 8.6e-62 241.1 196 62.8
CSS0011461 Camellia sinensis var. sinensis HOM05D004967 ORTHO05D006146 1.9e-61 240.0 191 66.0
Eucgr.F03780 Eucalyptus grandis HOM05D004967 ORTHO05D006146 2.5e-61 239.6 194 65.5
Sabra05G0133100 Salix brachista HOM05D004967 ORTHO05D006146 2.5e-61 239.6 199 60.3
Thecc.08G123500 Theobroma cacao HOM05D004967 ORTHO05D006146 4.3e-61 238.8 197 64.5
CANSAT54G1838 Cannabis sativa HOM05D004967 ORTHO05D006146 9.5e-61 237.7 195 61.5
AUR62019051 Chenopodium quinoa HOM05D004967 ORTHO05D006146 1.2e-60 237.3 230 53.0
RcHm_v2.0_Chr6g0295611 Rosa chinensis HOM05D004967 ORTHO05D006146 1.2e-60 237.3 197 63.5
Atru.chr13.1436 Acer truncatum HOM05D004967 ORTHO05D006146 1.6e-60 236.9 198 61.1
COL.COLO4_35945 Corchorus olitorius HOM05D004967 ORTHO05D006146 2.1e-60 236.5 197 59.4
Potri.002G084900 Populus trichocarpa HOM05D004967 ORTHO05D006146 2.8e-60 236.1 199 59.3
Eucgr.L02366 Eucalyptus grandis HOM05D004967 ORTHO05D006146 3.6e-60 235.7 200 62.5
PGR042G3942 Punica granatum HOM05D004967 ORTHO05D006146 2.3e-59 233.0 197 60.9
Sabra02G0066300 Salix brachista HOM05D004967 ORTHO05D006146 2.3e-59 233.0 199 57.8
FvH4_2g26730 Fragaria vesca HOM05D004967 ORTHO05D006146 3.1e-59 232.6 197 61.4
MELO3C008775.2 Cucumis melo HOM05D004967 ORTHO05D006146 4.0e-59 232.3 197 58.9
FAN15G1580 Fragaria x ananassa HOM05D004967 ORTHO05D006146 4.0e-59 232.3 198 61.1
FAN24G1575 Fragaria x ananassa HOM05D004967 ORTHO05D006146 5.2e-59 231.9 197 61.4
GSVIVG01008885001 Vitis vinifera HOM05D004967 ORTHO05D006146 8.9e-59 231.1 198 63.6
Peaxi162Scf00688g00357 Petunia axillaris HOM05D004967 ORTHO05D006146 5.8e-58 228.4 196 60.7
Lj7C339G8 Lonicera japonica HOM05D004967 ORTHO05D006146 1.3e-57 227.3 195 59.0
Gohir.D05G236800 Gossypium hirsutum HOM05D004967 ORTHO05D006146 2.9e-57 226.1 198 58.6
Gorai.009G245200 Gossypium raimondii HOM05D004967 ORTHO05D006146 2.9e-57 226.1 198 58.6
CsaV3_2G009340 Cucumis sativus L. HOM05D004967 ORTHO05D006146 6.4e-57 224.9 197 57.4
Duzib093G0019 Durio zibethinus HOM05D004967 ORTHO05D006146 6.4e-57 224.9 205 58.5
arahy.Tifrunner.gnm1.ann1.W41MX0 Arachis hypogaea HOM05D004967 ORTHO05D006146 8.3e-57 224.6 202 55.9
ClCG08G005580 Citrullus lanatus HOM05D004967 ORTHO05D006146 8.3e-57 224.6 201 56.2
Lj1g0018094 Lotus japonicus HOM05D004967 ORTHO05D006146 8.3e-57 224.6 193 57.5
Solyc11g030380.2 Solanum lycopersicum HOM05D004967 ORTHO05D006146 8.3e-57 224.6 196 57.1
CiPaw.06G029300 Carya illinoinensis HOM05D004967 ORTHO05D006146 1.1e-56 224.2 195 62.6
TAR625G0546 Trochodendron aralioides HOM05D004967 ORTHO05D006146 1.4e-56 223.8 191 65.4
Gohir.A05G234500 Gossypium hirsutum HOM05D004967 ORTHO05D006146 1.9e-56 223.4 198 57.6
Dinv27328 Davidia involucrata HOM05D004967 ORTHO05D006146 2.4e-56 223.0 194 57.2
arahy.Tifrunner.gnm1.ann1.T53UMC Arachis hypogaea HOM05D004967 ORTHO05D006146 4.1e-56 222.2 202 55.4
Solyc11g030390.2 Solanum lycopersicum HOM05D004967 ORTHO05D006146 4.1e-56 222.2 196 57.1
Oeu017287.2 Olea europaea HOM05D004967 ORTHO05D006146 9.2e-56 221.1 191 55.5
Oeu050911.2 Olea europaea HOM05D004967 ORTHO05D006146 2.7e-55 219.5 197 55.3
Duzib116G0335 Durio zibethinus HOM05D004967 ORTHO05D006146 4.6e-55 218.8 198 57.1
Sopen11g013330 Solanum pennellii HOM05D004967 ORTHO05D006146 6.0e-55 218.4 198 57.1
Sopen11g013380 Solanum pennellii HOM05D004967 ORTHO05D006146 7.8e-55 218.0 198 56.6
Lalb_Chr04g0253391 Lupinus albus HOM05D004967 ORTHO05D006146 1.3e-54 217.2 190 57.4
Nitab4.5_0005272g0050 Nicotiana tabacum HOM05D004967 ORTHO05D006146 1.3e-54 217.2 194 55.7
Phvul.008G163800 Phaseolus vulgaris HOM05D004967 ORTHO05D006146 2.3e-54 216.5 201 55.2
MSTRG.22413 Avicennia marina HOM05D004967 ORTHO05D006146 8.6e-54 214.5 202 54.5
Ca_12612_v3 Cicer arietinum L. HOM05D004967 ORTHO05D006146 1.1e-53 214.2 193 61.1
Glyma.13G080800 Glycine max HOM05D004967 ORTHO05D006146 1.1e-53 214.2 201 55.2
Sed0005970 Sechium edule HOM05D004967 ORTHO05D006146 1.5e-53 213.8 197 53.8
Actinidia23071 Actinidia chinensis HOM05D004967 ORTHO05D006146 1.9e-53 213.4 198 56.6
Gohir.D01G181000 Gossypium hirsutum HOM05D004967 ORTHO05D006146 1.9e-53 213.4 194 54.1
Gorai.002G221500 Gossypium raimondii HOM05D004967 ORTHO05D006146 2.5e-53 213.0 194 53.6
TAR376G0668 Trochodendron aralioides HOM05D004967 ORTHO05D006146 2.5e-53 213.0 201 54.7
Glyma.14G148500 Glycine max HOM05D004967 ORTHO05D006146 3.3e-53 212.6 201 59.7
SalBow6G6278 Salvia bowleyana HOM05D004967 ORTHO05D006146 5.6e-53 211.8 201 55.2
DCAR_003730 Daucus carota HOM05D004967 ORTHO05D006146 1.2e-52 210.7 192 54.2
DCAR_017414 Daucus carota HOM05D004967 ORTHO05D006146 1.2e-52 210.7 193 56.0
Lalb_Chr10g0101781 Lupinus albus HOM05D004967 ORTHO05D006146 6.2e-52 208.4 192 55.2
Lsat_1_v5_gn_2_72221 Lactuca sativa HOM05D004967 ORTHO05D006146 8.1e-52 208.0 204 52.0
Medtr1g030420 Medicago truncatula HOM05D004967 ORTHO05D006146 1.4e-51 207.2 201 54.2
Gohir.A01G188500 Gossypium hirsutum HOM05D004967 ORTHO05D006146 2.4e-51 206.5 194 53.1
Psat6g042000 Pisum sativum HOM05D004967 ORTHO05D006146 3.1e-51 206.1 195 56.4
Nitab4.5_0007033g0030 Nicotiana tabacum HOM05D004967 ORTHO05D006146 5.2e-51 205.3 192 53.1
PGSC0003DMG400022093 Solanum tuberosum HOM05D004967 ORTHO05D006146 6.8e-51 204.9 196 53.6
Thhalv10011651m.g Eutrema salsugineum HOM05D004967 ORTHO05D006146 3.4e-50 202.6 204 52.5
MSTRG.1454 Avicennia marina HOM05D004967 ORTHO05D006146 9.9e-50 201.1 202 56.4
THA.LOC104806820 Tarenaya hassleriana HOM05D004967 ORTHO05D006146 1.7e-49 200.3 201 48.8
AT1G44770 Arabidopsis thaliana HOM05D004967 ORTHO05D006146 3.8e-49 199.1 196 53.6
BcaB07g33933 Brassica carinata HOM05D004967 ORTHO05D006146 6.4e-49 198.4 209 52.2
Sp1g33630 Schrenkiella parvula HOM05D004967 ORTHO05D006146 6.4e-49 198.4 206 51.9
BcaC08g42866 Brassica carinata HOM05D004967 ORTHO05D006146 8.4e-49 198.0 208 51.4
C06p00760 Brassica napus HOM05D004967 ORTHO05D006146 8.4e-49 198.0 208 51.4
BolC6t35218H Brassica oleracea HOM05D004967 ORTHO05D006146 8.4e-49 198.0 208 51.4
THA.LOC104817267 Tarenaya hassleriana HOM05D004967 ORTHO05D006146 8.4e-49 198.0 196 51.5
AL1G52430 Arabidopsis lyrata HOM05D004967 ORTHO05D006146 1.1e-48 197.6 196 53.1
Carub.0001s3529 Capsella rubella HOM05D004967 ORTHO05D006146 1.1e-48 197.6 197 52.8
SGA_v2.0_scaffold28G12004 Striga asiatica HOM05D004967 ORTHO05D006146 1.9e-48 196.8 203 53.7
CARHR036020 Cardamine hirsuta HOM05D004967 ORTHO05D006146 2.4e-48 196.4 209 51.7
BraSC36t46077Z Brassica rapa HOM05D004967 ORTHO05D006146 4.1e-48 195.7 209 51.2
Migut.N03288 Erythranthe guttata HOM05D004967 ORTHO05D006146 7.1e-48 194.9 215 50.7
A10p07360 Brassica napus HOM05D004967 ORTHO05D006146 9.2e-48 194.5 209 51.2
Cc00_g04290 Coffea canephora HOM05D004967 ORTHO05D006146 9.2e-48 194.5 204 55.9
Aa31LG6G9260 Aethionema arabicum HOM05D004967 ORTHO05D006146 2.1e-47 193.4 198 51.5
MBI06_g20715_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 3.5e-47 192.6 201 54.2
Aa31LG9G14250 Aethionema arabicum HOM05D004967 ORTHO05D006146 1.0e-46 191.0 195 50.3
TAR625G0133 Trochodendron aralioides HOM05D004967 ORTHO05D006146 5.1e-46 188.7 199 58.8
ECA238G0202 Erigeron canadensis HOM05D004967 ORTHO05D006146 1.1e-45 187.6 194 50.0
SGA_v2.0_scaffold25G11115 Striga asiatica HOM05D004967 ORTHO05D006146 1.2e-44 184.1 206 50.5
Aqoxy6G00188 Aquilegia oxysepala HOM05D004967 ORTHO05D006146 3.6e-44 182.6 194 52.1
TPR.G25780 Trifolium pratense HOM05D004967 ORTHO05D006146 6.2e-44 181.8 151 58.9
vmacro12539 Vaccinium macrocarpon HOM05D004967 ORTHO05D006146 5.2e-43 178.7 252 40.5
CDE08G1235 Ceratophyllum demersum HOM05D004967 ORTHO05D006146 6.9e-43 178.3 197 47.7
Cpa.g.sc36.53 Carica papaya HOM05D004967 ORTHO05D006146 7.6e-42 174.9 194 47.4
PSO782G2864 Papaver somniferum HOM05D004967 ORTHO05D006146 4.9e-41 172.2 208 51.0
QL09p037225 Quercus lobata HOM05D004967 ORTHO05D006146 1.1e-40 171.0 157 61.8
Nn1g08721 Nelumbo nucifera HOM05D004967 ORTHO05D006146 1.9e-40 170.2 206 50.5
PSO170G5727 Papaver somniferum HOM05D004967 ORTHO05D006146 2.1e-36 156.8 210 49.0
unitig_22.g6736 Utricularia gibba HOM05D001808 ORTHO05D001747 8.1e-36 154.8 197 41.6
HanXRQChr14g0444041 Helianthus annuus HOM05D004967 ORTHO05D006146 2.2e-33 146.7 204 40.2
HPP92_011156 Vanilla planifolia HOM05D004967 ORTHO05D006146 7.1e-32 141.7 198 40.4
ATR0104G008 Amborella trichopoda HOM05D004967 ORTHO05D006146 1.5e-29 134.0 196 41.3
Lalb_Chr00c21g0406251 Lupinus albus HOM05D004967 ORTHO05D006146 2.8e-28 129.8 109 56.9
Os03g0701600 Oryza sativa ssp. japonica HOM05D004967 ORTHO05D006146 4.8e-28 129.0 197 38.1
Zm00001eb054160 Zea mays HOM05D004967 ORTHO05D006146 5.3e-27 125.6 206 36.9
FAN27G2484 Fragaria x ananassa HOM05D004967 ORTHO05D006146 4.5e-26 122.5 127 52.0
Gorai.013G198200 Gossypium raimondii HOM05D004967 ORTHO05D006146 1.7e-25 120.6 125 49.6
SEGI_02584 Sequoiadendron giganteum HOM05D004967 ORTHO05D006146 1.4e-24 117.5 207 33.8
PSO782G2362 Papaver somniferum HOM05D004967 ORTHO05D006146 3.5e-23 112.8 107 57.0
MBI18_g45942_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 6.7e-22 108.6 77 66.2
MBI08_g02103_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D011152 8.7e-22 108.2 71 70.4
SEGI_08861 Sequoiadendron giganteum HOM05D004967 ORTHO05D006146 2.5e-21 106.7 207 32.9
MBI02_g43670_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 5.6e-21 105.5 69 72.5
QL09p036488 Quercus lobata HOM05D004967 ORTHO05D006146 2.1e-20 103.6 68 67.6
arahy.Tifrunner.gnm1.ann1.UMLE7H Arachis hypogaea HOM05D004967 ORTHO05D006146 2.8e-20 103.2 130 46.9
MBI12_g24277_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 1.1e-19 101.3 77 63.6
MBI18_g05572_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 1.1e-19 101.3 139 44.6
MBI18_g40420_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 3.4e-18 96.3 81 61.7
Gohir.D06G124400 Gossypium hirsutum HOM05D004967 ORTHO05D006146 2.9e-17 93.2 134 38.1
Gorai.009G323800 Gossypium raimondii HOM05D004967 ORTHO05D006146 4.9e-17 92.4 125 40.8
SGA_v2.0_scaffold106G30705 Striga asiatica HOM05D004967 ORTHO05D006146 2.1e-15 87.0 107 46.7
CBR_g13070 Chara braunii HOM05D004967 ORTHO05D006146 5.1e-14 82.4 205 31.2
Mapoly0023s0096 Marchantia polymorpha HOM05D004160 ORTHO05D004757 8.7e-14 81.6 203 31.0
Mapoly0023s0095 Marchantia polymorpha HOM05D004967 ORTHO05D004757 1.6e-12 77.4 203 28.1
MBI18_g40417_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 8.2e-12 75.1 55 63.6
Pp3c23_8360 Physcomitrium patens HOM05D004160 ORTHO05D004757 1.4e-11 74.3 199 29.1
FAN20G0116 Fragaria x ananassa HOM05D004967 ORTHO05D006146 1.5e-10 70.9 43 69.8
FAN27G1416 Fragaria x ananassa HOM05D004967 ORTHO05D006146 1.5e-10 70.9 43 69.8
MBI12_g00099_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 2.6e-10 70.1 59 59.3
Actinidia02612 Actinidia chinensis HOM05D004967 ORTHO05D004601 3.4e-10 69.7 78 48.7
Thhalv10011964m.g Eutrema salsugineum HOM05D004967 ORTHO05D006146 1.2e-07 61.2 44 59.1
AagrBONN_evm.TU.Sc2ySwM_344.3696 Anthoceros agrestis HOM05D004160 ORTHO05D004757 6.1e-07 58.9 220 25.9


User provided reference genes

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