Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc23g0000220 Simmondsia chinensis HOM05D003496 ORTHO05D003909 0.0e+00 1327.8 815 100.0
Hund16907 Selenicereus undatus HOM05D003496 ORTHO05D003909 1.3e-205 720.7 818 58.1
Hund16910 Selenicereus undatus HOM05D003496 ORTHO05D003909 2.0e-203 713.4 818 57.7
Ah.05g169990 Amaranthus hybridus HOM05D003496 ORTHO05D003909 1.0e-199 701.0 815 60.5
EL10Ac1g01221 Beta vulgaris HOM05D003496 ORTHO05D003909 5.0e-194 682.2 814 61.3
MD15G1368600 Malus domestica HOM05D003496 ORTHO05D003909 6.7e-191 671.8 822 56.3
vmacro18796 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 3.8e-186 656.0 823 53.2
Cfa013633 Carpinus fangiana HOM05D003496 ORTHO05D003909 5.0e-186 655.6 823 56.3
Dinv44773 Davidia involucrata HOM05D003496 ORTHO05D003909 1.6e-184 650.6 823 53.1
AUR62038519 Chenopodium quinoa HOM05D003496 ORTHO05D003909 1.0e-183 647.9 818 59.0
Sabra02G0075900 Salix brachista HOM05D003496 ORTHO05D003909 1.5e-182 644.0 823 49.8
CSS0008540 Camellia sinensis var. sinensis HOM05D003496 ORTHO05D003909 6.3e-181 638.6 823 55.0
Glyma.13G089100 Glycine max HOM05D003496 ORTHO05D003909 1.4e-180 637.5 812 53.0
Potri.002G096400 Populus trichocarpa HOM05D003496 ORTHO05D003909 7.7e-179 631.7 772 52.8
vmacro13001 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 5.5e-177 625.5 828 53.3
TWI12G1339 Tripterygium wilfordii HOM05D003496 ORTHO05D003909 1.2e-176 624.4 814 51.2
Manes.18G067700 Manihot esculenta HOM05D003496 ORTHO05D003909 3.4e-174 616.3 814 52.1
Lj5C255G21 Lonicera japonica HOM05D003496 ORTHO05D003909 8.3e-173 611.7 818 53.1
CAN.G101.20 Capsicum annuum HOM05D003496 ORTHO05D003909 2.4e-172 610.1 819 48.2
Eucgr.F00323 Eucalyptus grandis HOM05D003496 ORTHO05D003909 7.0e-172 608.6 825 52.7
Actinidia27185 Actinidia chinensis HOM05D003496 ORTHO05D003909 1.6e-171 607.4 829 54.4
Psat2g073040 Pisum sativum HOM05D003496 ORTHO05D003909 8.6e-170 601.7 815 50.6
GSVIVG01009028001 Vitis vinifera HOM05D003496 ORTHO05D003909 1.2e-168 597.8 822 52.3
AUR62027754 Chenopodium quinoa HOM05D003496 ORTHO05D003909 2.3e-167 593.6 818 56.0
Medtr5g063730 Medicago truncatula HOM05D003496 ORTHO05D003909 3.0e-167 593.2 830 53.5
Ciclev10000237m.g Citrus clementina HOM05D003496 ORTHO05D003909 2.6e-166 590.1 822 50.7
Oeu046297.1 Olea europaea HOM05D003496 ORTHO05D003909 4.4e-166 589.3 817 49.0
DCAR_031330 Daucus carota HOM05D003496 ORTHO05D003909 9.8e-166 588.2 823 48.2
TWI56G0580 Tripterygium wilfordii HOM05D003496 ORTHO05D003909 1.3e-165 587.8 814 51.6
Thecc.08G107000 Theobroma cacao HOM05D003496 ORTHO05D003909 2.2e-165 587.0 814 52.3
Atru.chr13.1191 Acer truncatum HOM05D003496 ORTHO05D003909 1.4e-164 584.3 823 51.5
Atru.chr13.1193 Acer truncatum HOM05D003496 ORTHO05D003909 1.4e-164 584.3 823 51.5
Aqoxy6G00790 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 7.0e-164 582.0 814 50.7
Lj1g0018735 Lotus japonicus HOM05D003496 ORTHO05D003909 2.7e-163 580.1 814 52.3
CANSAT25G1637 Cannabis sativa HOM05D003496 ORTHO05D003909 1.3e-162 577.8 822 51.9
TAR628G0803 Trochodendron aralioides HOM05D003496 ORTHO05D003909 1.7e-162 577.4 822 52.9
PGR042G0634 Punica granatum HOM05D003496 ORTHO05D003909 3.9e-162 576.2 824 47.1
RcHm_v2.0_Chr7g0243631 Rosa chinensis HOM05D003496 ORTHO05D003909 6.6e-162 575.5 821 50.8
Gohir.D05G229200 Gossypium hirsutum HOM05D003496 ORTHO05D003909 1.1e-161 574.7 822 51.0
CiPaw.08G045100 Carya illinoinensis HOM05D003496 ORTHO05D003909 3.6e-160 569.7 822 53.0
Cc10_g07230 Coffea canephora HOM05D003496 ORTHO05D003909 6.1e-160 568.9 820 52.9
THA.LOC104810802 Tarenaya hassleriana HOM05D003496 ORTHO05D003909 8.0e-160 568.5 824 44.9
Gorai.009G237200 Gossypium raimondii HOM05D003496 ORTHO05D003909 1.0e-159 568.2 822 50.7
Prupe.1G516800 Prunus persica HOM05D003496 ORTHO05D003909 2.3e-159 567.0 821 53.5
FAN18G3881 Fragaria x ananassa HOM05D003496 ORTHO05D003909 8.9e-159 565.1 829 49.7
FvH4_5g37341 Fragaria vesca HOM05D003496 ORTHO05D003909 2.0e-158 563.9 821 49.7
Gohir.A05G226500 Gossypium hirsutum HOM05D003496 ORTHO05D003909 4.9e-157 559.3 822 50.2
Sopen04g029300 Solanum pennellii HOM05D003496 ORTHO05D003909 1.7e-154 550.8 815 49.8
TPR.G16752 Trifolium pratense HOM05D003496 ORTHO05D003909 3.3e-153 546.6 832 51.9
RcHm_v2.0_Chr7g0239001 Rosa chinensis HOM05D003496 ORTHO05D003909 8.0e-152 542.0 821 49.1
PGSC0003DMG400006412 Solanum tuberosum HOM05D003496 ORTHO05D003909 8.0e-152 542.0 810 50.5
QL12p036753 Quercus lobata HOM05D003496 ORTHO05D003909 4.0e-151 539.7 822 52.9
Peaxi162Scf00041g01739 Petunia axillaris HOM05D003496 ORTHO05D003909 1.2e-150 538.1 817 48.5
HanXRQChr13g0402471 Helianthus annuus HOM05D003496 ORTHO05D003909 7.5e-150 535.4 814 46.7
FAN08G2234 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.7e-149 534.3 821 48.6
Nitab4.5_0000232g0220 Nicotiana tabacum HOM05D003496 ORTHO05D003909 8.3e-149 531.9 820 52.3
FvH4_6g40021 Fragaria vesca HOM05D003496 ORTHO05D003909 1.6e-147 527.7 821 46.8
Phvul.008G173500 Phaseolus vulgaris HOM05D003496 ORTHO05D003909 1.7e-146 524.2 813 49.1
vmacro18810 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 2.5e-145 520.4 744 49.1
FAN18G0240 Fragaria x ananassa HOM05D003496 ORTHO05D003909 6.2e-144 515.8 756 49.6
PSO063G1836 Papaver somniferum HOM05D003496 ORTHO05D003909 6.2e-144 515.8 825 46.5
Migut.C01172 Erythranthe guttata HOM05D003496 ORTHO05D003909 1.1e-143 515.0 821 49.8
PSO832G0815 Papaver somniferum HOM05D003496 ORTHO05D003909 3.1e-143 513.5 825 46.8
Rhsim06G0082300 Rhododendron simsii HOM05D003496 ORTHO05D003909 3.1e-143 513.5 893 47.1
HanXRQChr13g0402531 Helianthus annuus HOM05D003496 ORTHO05D003909 2.7e-139 500.4 853 46.5
AL1G35730 Arabidopsis lyrata HOM05D003496 ORTHO05D003909 3.5e-139 500.0 817 46.4
arahy.Tifrunner.gnm1.ann1.ZN2UT8 Arachis hypogaea HOM05D003496 ORTHO05D003909 3.0e-138 496.9 815 49.1
FvH4_5g37876 Fragaria vesca HOM05D003496 ORTHO05D003909 1.5e-137 494.6 756 48.9
Ca_05276_v3 Cicer arietinum L. HOM05D003496 ORTHO05D003909 6.2e-136 489.2 813 49.0
Ca_05283_v3 Cicer arietinum L. HOM05D003496 ORTHO05D003909 6.2e-136 489.2 813 49.0
arahy.Tifrunner.gnm1.ann1.92N1A9 Arachis hypogaea HOM05D003496 ORTHO05D003909 2.4e-135 487.3 815 48.3
FAN13G0595 Fragaria x ananassa HOM05D003496 ORTHO05D003909 2.0e-134 484.2 828 45.5
SGA_v2.0_scaffold24G10490 Striga asiatica HOM05D003496 ORTHO05D003909 2.6e-134 483.8 839 45.4
FvH4_5g32780 Fragaria vesca HOM05D003496 ORTHO05D003909 9.9e-134 481.9 645 47.1
AT1G22260 Arabidopsis thaliana HOM05D003496 ORTHO05D003909 3.8e-133 479.9 813 45.4
Nn1g05352 Nelumbo nucifera HOM05D003496 ORTHO05D003909 4.9e-133 479.6 728 49.2
FAN08G2337 Fragaria x ananassa HOM05D003496 ORTHO05D003909 6.4e-133 479.2 656 47.3
FAN04G0832 Fragaria x ananassa HOM05D003496 ORTHO05D003909 5.4e-132 476.1 821 45.4
AT1G22275 Arabidopsis thaliana HOM05D003496 ORTHO05D003909 2.3e-130 470.7 815 44.8
Carub.0001s2181 Capsella rubella HOM05D003496 ORTHO05D003909 8.7e-130 468.8 815 44.8
Sed0000627 Sechium edule HOM05D003496 ORTHO05D003909 8.7e-130 468.8 822 41.7
Oeu012925.3 Olea europaea HOM05D003496 ORTHO05D003909 1.9e-129 467.6 933 45.8
MELO3C003452.2 Cucumis melo HOM05D003496 ORTHO05D003909 3.1e-127 460.3 822 40.9
Aa31LG7G6200 Aethionema arabicum HOM05D003496 ORTHO05D003909 1.2e-126 458.4 818 45.8
VMungo0647G0446 Vigna mungo HOM05D003496 ORTHO05D003909 1.2e-126 458.4 652 49.4
Carub.0001s2183 Capsella rubella HOM05D003496 ORTHO05D003909 2.2e-125 454.1 818 43.9
ClCG11G015270 Citrullus lanatus HOM05D003496 ORTHO05D003909 1.4e-124 451.4 821 40.1
CsaV3_3G048690 Cucumis sativus L. HOM05D003496 ORTHO05D003909 1.7e-122 444.5 819 40.7
Sp5g33310 Schrenkiella parvula HOM05D003496 ORTHO05D003909 3.6e-120 436.8 824 43.3
FAN18G2959 Fragaria x ananassa HOM05D003496 ORTHO05D003909 6.2e-120 436.0 659 44.2
COL.COLO4_16402 Corchorus olitorius HOM05D003496 ORTHO05D003909 1.1e-116 425.2 719 47.3
PSO761G0292 Papaver somniferum HOM05D003496 ORTHO05D003909 2.4e-116 424.1 624 45.2
Cpa.g.sc36.129 Carica papaya HOM05D003496 ORTHO05D003909 6.0e-115 419.5 652 43.9
ATR0782G233 Amborella trichopoda HOM05D003496 ORTHO05D003909 3.9e-114 416.8 823 42.4
ECA233G4469 Erigeron canadensis HOM05D003496 ORTHO05D003909 2.5e-113 414.1 812 41.4
Lj5C269T10 Lonicera japonica HOM05D003496 ORTHO05D003909 2.5e-113 414.1 758 39.2
BcaB02g07153 Brassica carinata HOM05D003496 ORTHO05D003909 5.6e-113 412.9 775 42.3
Glyma.14G173000 Glycine max HOM05D003496 ORTHO05D003909 2.1e-112 411.0 681 47.1
Nitab4.5_0005777g0080 Nicotiana tabacum HOM05D003496 ORTHO05D003909 3.7e-112 410.2 815 42.2
A07p27660 Brassica napus HOM05D003496 ORTHO05D003909 1.8e-111 407.9 824 39.1
vmacro21271 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 2.0e-110 404.4 817 40.0
FvH4_5g39260 Fragaria vesca HOM05D003496 ORTHO05D003909 1.0e-109 402.1 474 52.1
SHI03709 Sapria himalayana HOM05D003496 ORTHO05D000023 1.0e-106 392.1 560 44.8
BolC6t38227H Brassica oleracea HOM05D003496 ORTHO05D003909 3.0e-106 390.6 827 39.4
BcaC08g45430 Brassica carinata HOM05D003496 ORTHO05D003909 3.9e-106 390.2 827 39.4
C06p30630 Brassica napus HOM05D003496 ORTHO05D003909 3.9e-106 390.2 827 39.4
C06p52130 Brassica napus HOM05D003496 ORTHO05D003909 8.7e-106 389.0 825 40.8
BolC6t40236H Brassica oleracea HOM05D003496 ORTHO05D003909 8.7e-106 389.0 825 40.8
A07p43490 Brassica napus HOM05D003496 ORTHO05D003909 1.1e-105 388.7 825 40.4
HPP92_004286 Vanilla planifolia HOM05D003496 ORTHO05D003909 1.6e-104 384.8 772 36.0
Thhalv10018107m.g Eutrema salsugineum HOM05D003496 ORTHO05D003909 2.1e-104 384.4 825 40.5
BraA07t31861Z Brassica rapa HOM05D003496 ORTHO05D003909 6.2e-104 382.9 825 40.0
Os04g0452500 Oryza sativa ssp. japonica HOM05D003496 ORTHO05D003909 2.0e-102 377.9 805 41.5
BraA07t30407Z Brassica rapa HOM05D003496 ORTHO05D003909 1.0e-101 375.6 880 36.4
BcaB03g15989 Brassica carinata HOM05D003496 ORTHO05D003909 6.5e-101 372.9 822 40.6
Zm00001eb423930 Zea mays HOM05D003496 ORTHO05D003909 4.2e-100 370.2 801 37.2
RcHm_v2.0_Chr0c28g0501001 Rosa chinensis HOM05D003496 ORTHO05D003909 7.2e-100 369.4 579 48.9
BcaC08g47393 Brassica carinata HOM05D003496 ORTHO05D003909 2.2e-96 357.8 876 38.5
Lsat_1_v5_gn_1_3120 Lactuca sativa HOM05D003496 ORTHO05D003909 2.2e-96 357.8 812 43.8
MSTRG.1476 Avicennia marina HOM05D003496 ORTHO05D003909 1.1e-95 355.5 625 38.1
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 2.1e-91 341.3 565 41.9
TPR.G7886 Trifolium pratense HOM05D003496 ORTHO05D003909 2.7e-91 340.9 488 43.0
Lj5A269G20 Lonicera japonica HOM05D003496 ORTHO05D003909 5.3e-87 326.6 546 40.8
BcaB03g15988 Brassica carinata HOM05D003496 ORTHO05D003909 1.5e-86 325.1 852 37.4
Lalb_Chr10g0102381 Lupinus albus HOM05D003496 ORTHO05D003909 1.0e-82 312.4 573 49.2
RcHm_v2.0_Chr7g0243551 Rosa chinensis HOM05D003496 ORTHO05D003909 3.3e-81 307.4 579 43.9
Actinidia10322 Actinidia chinensis HOM05D003496 ORTHO05D003909 3.2e-76 290.8 307 56.4
unitig_899.g14555 Utricularia gibba HOM05D003496 ORTHO05D003909 3.7e-72 277.3 693 34.3
RcHm_v2.0_Chr0c28g0501041 Rosa chinensis HOM05D003496 ORTHO05D003909 4.5e-70 270.4 352 48.3
RcHm_v2.0_Chr7g0243601 Rosa chinensis HOM05D003496 ORTHO05D003909 4.5e-70 270.4 352 48.3
Actinidia30771 Actinidia chinensis HOM05D003496 ORTHO05D003909 1.1e-68 265.8 301 54.2
CDE10G0763 Ceratophyllum demersum HOM05D003496 ORTHO05D003909 4.0e-58 230.7 351 46.2
Solyc04g074120.4 Solanum lycopersicum HOM05D003496 ORTHO05D003909 5.7e-57 226.9 409 51.8
CDE10G0427 Ceratophyllum demersum HOM05D003496 ORTHO05D003909 4.7e-51 207.2 378 38.1
Actinidia30770 Actinidia chinensis HOM05D003496 ORTHO05D003909 1.2e-46 192.6 293 56.3
CARHR022630 Cardamine hirsuta HOM05D003496 ORTHO05D003909 3.9e-45 187.6 298 39.3
Duzib093G1287 Durio zibethinus HOM05D003496 ORTHO05D003909 5.0e-45 187.2 350 41.1
SEGI_13289 Sequoiadendron giganteum HOM05D003496 ORTHO05D003909 5.0e-45 187.2 613 29.5
RcHm_v2.0_Chr0c28g0500941 Rosa chinensis HOM05D003496 ORTHO05D003909 6.6e-45 186.8 417 36.0
Lalb_Chr10g0102391 Lupinus albus HOM05D003496 ORTHO05D003909 1.2e-43 182.6 241 52.3
Glyma.14G121700 Glycine max HOM05D003496 ORTHO05D003909 8.0e-43 179.9 184 60.3
CAN.G1227.18 Capsicum annuum HOM05D003496 ORTHO05D003909 2.4e-39 168.3 171 60.2
CARHR022660 Cardamine hirsuta HOM05D003496 ORTHO05D003909 6.0e-38 163.7 570 35.6
FAN18G0092 Fragaria x ananassa HOM05D003496 ORTHO05D003909 2.3e-34 151.8 339 36.6
FAN08G0731 Fragaria x ananassa HOM05D003496 ORTHO05D003909 2.2e-32 145.2 248 41.9
Actinidia10321 Actinidia chinensis HOM05D003496 ORTHO05D003909 2.7e-30 138.3 150 62.7
C05p24820 Brassica napus HOM05D000415 ORTHO05D003909 2.7e-30 138.3 279 40.5
BolC5t31211H Brassica oleracea HOM05D003496 ORTHO05D003909 2.7e-30 138.3 279 40.5
AL1G36770 Arabidopsis lyrata HOM05D003496 ORTHO05D023659 2.8e-27 128.3 212 59.0
MSTRG.1477 Avicennia marina HOM05D003496 ORTHO05D003909 3.6e-27 127.9 102 68.6
FvH4_5g39261 Fragaria vesca HOM05D003496 ORTHO05D003909 3.4e-25 121.3 123 53.7
TPR.G7904 Trifolium pratense HOM05D003496 ORTHO05D003909 6.4e-24 117.1 105 58.1
SMO230G0003 Selaginella moellendorffii HOM05D003496 ORTHO05D003909 5.4e-23 114.0 373 30.6
FAN08G1794 Fragaria x ananassa HOM05D003496 ORTHO05D003909 7.1e-23 113.6 233 39.5
RcHm_v2.0_Chr0c28g0500951 Rosa chinensis HOM05D003496 ORTHO05D003909 7.1e-23 113.6 145 43.4
RcHm_v2.0_Chr0c28g0501031 Rosa chinensis HOM05D003496 ORTHO05D003909 3.9e-21 107.8 106 57.5
RcHm_v2.0_Chr7g0243591 Rosa chinensis HOM05D003496 ORTHO05D003909 3.9e-21 107.8 106 57.5
CARHR022600 Cardamine hirsuta HOM05D003496 ORTHO05D003909 2.5e-20 105.1 141 43.3
FvH4_5g32650 Fragaria vesca HOM05D003496 ORTHO05D003909 1.5e-17 95.9 97 57.7
Mapoly0040s0123 Marchantia polymorpha HOM05D003496 ORTHO05D003909 1.3e-16 92.8 646 22.6
MBI16_g15384_MAGBIO Magnolia biondii HOM05D000112 ORTHO05D003909 3.8e-16 91.3 83 61.4
VMungo0647G2290 Vigna mungo HOM05D003496 ORTHO05D003909 7.1e-15 87.0 82 57.3
SEGI_27299 Sequoiadendron giganteum HOM05D003496 ORTHO05D003909 1.2e-14 86.3 444 26.4
C06p20140 Brassica napus HOM05D000331 ORTHO05D027779 2.3e-13 82.0 76 61.8
SHI03711 Sapria himalayana HOM05D003496 ORTHO05D003909 1.5e-12 79.3 82 73.2
RcHm_v2.0_Chr0c28g0500891 Rosa chinensis HOM05D003496 ORTHO05D003909 5.6e-12 77.4 86 55.8
Haze_22265 Corylus avellana HOM05D003496 ORTHO05D003909 9.6e-12 76.6 96 51.0
Aa31sc26G120 Aethionema arabicum HOM05D003496 ORTHO05D003909 1.4e-10 72.8 127 41.7
BolC6t37194H Brassica oleracea HOM05D013757 ORTHO05D027779 1.5e-09 69.3 57 66.7
BcaC08g44544 Brassica carinata HOM05D003496 ORTHO05D003909 7.6e-09 67.0 129 40.3
MBI02_g14193_MAGBIO Magnolia biondii HOM05D003496 ORTHO05D003909 2.2e-08 65.5 63 58.7
ECA233G3681 Erigeron canadensis HOM05D003496 ORTHO05D003909 2.9e-08 65.1 275 26.5
MBI08_g24353_MAGBIO Magnolia biondii HOM05D003496 ORTHO05D030050 2.9e-08 65.1 100 43.0
FvH4_5g37879 Fragaria vesca HOM05D003496 ORTHO05D003909 6.4e-08 63.9 82 45.1
ECA236G3179 Erigeron canadensis HOM05D003496 ORTHO05D003909 8.4e-08 63.5 111 42.3
MBI19_g10187_MAGBIO Magnolia biondii HOM05D020163 ORTHO05D003909 1.9e-07 62.4 84 44.0
Lsat_1_v5_gn_8_133541 Lactuca sativa HOM05D000087 ORTHO05D014732 4.2e-07 61.2 55 56.4
CARHR022640 Cardamine hirsuta HOM05D003496 ORTHO05D003909 7.9e-06 57.0 99 41.4
MBI05_g14901_MAGBIO Magnolia biondii HOM05D003496 ORTHO05D030050 7.9e-06 57.0 63 57.1


User provided reference genes

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