Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc23g0000110 Simmondsia chinensis HOM05D003923 ORTHO05D004553 4.4e-171 604.7 358 100.0
EL10Ac1g01249 Beta vulgaris HOM05D003923 ORTHO05D004553 6.8e-79 298.5 374 51.3
Gohir.A05G227800 Gossypium hirsutum HOM05D003923 ORTHO05D004553 4.1e-76 289.3 361 50.1
Cpa.g.sc36.119 Carica papaya HOM05D003923 ORTHO05D004553 1.2e-75 287.7 352 58.8
Gorai.009G238400 Gossypium raimondii HOM05D003923 ORTHO05D004553 3.5e-75 286.2 356 50.3
TWI56G0888 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 7.8e-75 285.0 368 51.9
Gohir.D05G230200 Gossypium hirsutum HOM05D003923 ORTHO05D004553 1.0e-74 284.6 355 50.1
CiPaw.07G181200 Carya illinoinensis HOM05D003923 ORTHO05D004553 1.7e-74 283.9 342 50.0
Phvul.009G029900 Phaseolus vulgaris HOM05D003923 ORTHO05D004553 3.3e-73 279.6 359 50.7
CSS0021337 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 1.2e-72 277.7 349 51.9
Manes.18G068600 Manihot esculenta HOM05D003923 ORTHO05D004553 1.2e-72 277.7 370 55.4
TWI12G0076 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 2.1e-72 276.9 378 48.7
Thecc.08G109100 Theobroma cacao HOM05D003923 ORTHO05D004553 6.2e-72 275.4 349 51.3
Gohir.A06G036700 Gossypium hirsutum HOM05D003923 ORTHO05D004553 1.4e-71 274.2 349 54.4
QL12p036407 Quercus lobata HOM05D003923 ORTHO05D004553 1.8e-71 273.9 353 48.2
CSS0001866 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 3.1e-71 273.1 353 50.1
Hma1.2p1_0120F.1_g057290 Hydrangea macrophylla HOM05D003923 ORTHO05D004553 1.2e-70 271.2 351 53.6
Haze_22250 Corylus avellana HOM05D003923 ORTHO05D004553 3.4e-70 269.6 351 48.1
Sabra05G0125400 Salix brachista HOM05D003923 ORTHO05D004553 4.4e-70 269.2 352 49.7
Cfa013623 Carpinus fangiana HOM05D003923 ORTHO05D004553 5.8e-70 268.9 342 49.1
Potri.005G166400 Populus trichocarpa HOM05D003923 ORTHO05D004553 7.5e-70 268.5 352 51.4
Lalb_Chr08g0241981 Lupinus albus HOM05D003923 ORTHO05D004553 2.2e-69 266.9 373 47.2
COL.COLO4_16427 Corchorus olitorius HOM05D003923 ORTHO05D004553 3.7e-69 266.2 356 51.7
Gohir.D06G037500 Gossypium hirsutum HOM05D003923 ORTHO05D004553 3.7e-69 266.2 349 51.3
CiPaw.08G044000 Carya illinoinensis HOM05D003923 ORTHO05D004553 4.9e-69 265.8 348 48.3
Gorai.010G042400 Gossypium raimondii HOM05D003923 ORTHO05D004553 6.4e-69 265.4 349 51.6
Prupe.1G514400 Prunus persica HOM05D003923 ORTHO05D004553 6.4e-69 265.4 366 49.5
Eucgr.F02437 Eucalyptus grandis HOM05D003923 ORTHO05D004553 8.3e-69 265.0 355 43.4
Nn5g29082 Nelumbo nucifera HOM05D003923 ORTHO05D004553 1.1e-68 264.6 340 51.8
FAN18G1313 Fragaria x ananassa HOM05D003923 ORTHO05D004553 3.2e-68 263.1 356 50.6
Rhsim06G0083500 Rhododendron simsii HOM05D003923 ORTHO05D004553 3.2e-68 263.1 366 47.3
FAN08G0462 Fragaria x ananassa HOM05D003923 ORTHO05D004553 5.4e-68 262.3 360 48.3
Potri.002G094700 Populus trichocarpa HOM05D003923 ORTHO05D004553 5.4e-68 262.3 346 48.3
FvH4_5g37730 Fragaria vesca HOM05D003923 ORTHO05D004553 9.2e-68 261.5 356 50.6
FAN13G1718 Fragaria x ananassa HOM05D003923 ORTHO05D004553 7.8e-67 258.5 355 48.5
MD15G1366500 Malus domestica HOM05D003923 ORTHO05D004553 1.0e-66 258.1 384 46.4
Oeu024542.1 Olea europaea HOM05D003923 ORTHO05D004553 1.7e-66 257.3 347 49.3
FAN04G1592 Fragaria x ananassa HOM05D003923 ORTHO05D004553 3.0e-66 256.5 355 50.7
Oeu061492.1 Olea europaea HOM05D003923 ORTHO05D004553 3.0e-66 256.5 361 51.2
MD08G1180900 Malus domestica HOM05D003923 ORTHO05D004553 6.6e-66 255.4 355 49.0
HanXRQChr15g0491381 Helianthus annuus HOM05D003923 ORTHO05D004553 1.1e-65 254.6 350 50.9
RcHm_v2.0_Chr7g0239471 Rosa chinensis HOM05D003923 ORTHO05D004553 1.1e-65 254.6 350 50.0
Cc10_g07380 Coffea canephora HOM05D003923 ORTHO05D004553 1.5e-65 254.2 379 48.5
Duzib041G0577 Durio zibethinus HOM05D003923 ORTHO05D004553 2.5e-65 253.4 356 48.9
Medtr3g074210 Medicago truncatula HOM05D003923 ORTHO05D004553 2.5e-65 253.4 361 47.9
Ciclev10001646m.g Citrus clementina HOM05D003923 ORTHO05D004553 3.3e-65 253.1 359 49.6
Psat5g138360 Pisum sativum HOM05D003923 ORTHO05D004553 5.6e-65 252.3 370 46.8
Lj1g0006284 Lotus japonicus HOM05D003923 ORTHO05D004553 1.6e-64 250.8 372 44.6
TAR628G1119 Trochodendron aralioides HOM05D003923 ORTHO05D004553 2.1e-64 250.4 344 53.5
Glyma.06G104700 Glycine max HOM05D003923 ORTHO05D004553 2.8e-64 250.0 382 48.7
Peaxi162Scf00041g01015 Petunia axillaris HOM05D003923 ORTHO05D004553 1.8e-63 247.3 368 50.5
THA.LOC104809709 Tarenaya hassleriana HOM05D003923 ORTHO05D004553 3.1e-63 246.5 363 50.7
Lalb_Chr11g0065491 Lupinus albus HOM05D003923 ORTHO05D004553 5.2e-63 245.7 385 42.6
Duzib093G1759 Durio zibethinus HOM05D003923 ORTHO05D004553 8.9e-63 245.0 382 43.5
Ah.05g170190 Amaranthus hybridus HOM05D003923 ORTHO05D004553 1.2e-62 244.6 366 50.8
Lsat_1_v5_gn_9_43840 Lactuca sativa HOM05D003923 ORTHO05D004553 2.0e-62 243.8 344 53.5
BcaC08g47387 Brassica carinata HOM05D003923 ORTHO05D004553 3.4e-62 243.0 366 49.5
C06p52080 Brassica napus HOM05D003923 ORTHO05D004553 3.4e-62 243.0 366 49.5
BolC6t40231H Brassica oleracea HOM05D003923 ORTHO05D004553 3.4e-62 243.0 366 49.5
MSTRG.24466 Avicennia marina HOM05D003923 ORTHO05D004553 4.4e-62 242.7 364 48.4
BcaB03g15981 Brassica carinata HOM05D003923 ORTHO05D004553 5.8e-62 242.3 367 49.0
TPR.G35206 Trifolium pratense HOM05D003923 ORTHO05D004553 5.8e-62 242.3 356 46.6
CANSAT25G0676 Cannabis sativa HOM05D003923 ORTHO05D004553 9.9e-62 241.5 372 47.8
ECA246G1087 Erigeron canadensis HOM05D003923 ORTHO05D004553 1.4e-60 237.7 358 45.0
ECA232G2894 Erigeron canadensis HOM05D003923 ORTHO05D004553 2.4e-60 236.9 361 43.2
Actinidia30763 Actinidia chinensis HOM05D003923 ORTHO05D004553 1.2e-59 234.6 343 43.7
Aqoxy5G01999 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 6.0e-59 232.3 370 44.3
Sabra02G0074700 Salix brachista HOM05D003923 ORTHO05D004553 6.0e-59 232.3 350 50.3
Solyc12g056990.1 Solanum lycopersicum HOM05D003923 ORTHO05D004553 1.7e-58 230.7 347 47.8
CAN.G1261.5 Capsicum annuum HOM05D003923 ORTHO05D004553 2.3e-58 230.3 358 51.4
VMungo1309G2192 Vigna mungo HOM05D003923 ORTHO05D004553 1.5e-57 227.6 359 52.1
PGSC0003DMG400008539 Solanum tuberosum HOM05D003923 ORTHO05D004553 2.5e-57 226.9 344 46.8
Eucgr.F00301 Eucalyptus grandis HOM05D003923 ORTHO05D004553 4.3e-57 226.1 273 53.5
Aa31LG4G8160 Aethionema arabicum HOM05D003923 ORTHO05D004553 7.3e-57 225.3 361 49.0
Glyma.04G103500 Glycine max HOM05D003923 ORTHO05D004553 9.6e-57 224.9 353 45.0
Duzib116G0286 Durio zibethinus HOM05D003923 ORTHO05D004553 2.1e-56 223.8 297 49.2
Nitab4.5_0000421g0080 Nicotiana tabacum HOM05D003923 ORTHO05D004553 2.8e-56 223.4 347 46.1
BcaB05g25102 Brassica carinata HOM05D003923 ORTHO05D004553 1.4e-55 221.1 342 44.7
Nitab4.5_0002243g0010 Nicotiana tabacum HOM05D003923 ORTHO05D004553 3.1e-55 219.9 322 45.7
BcaB02g07147 Brassica carinata HOM05D003923 ORTHO05D004553 1.5e-54 217.6 361 46.5
Ca_15243_v3 Cicer arietinum L. HOM05D003923 ORTHO05D004553 2.6e-54 216.9 366 45.1
MBI02_g08739_MAGBIO Magnolia biondii HOM05D003923 ORTHO05D004553 3.4e-54 216.5 355 50.4
Peaxi162Scf00160g00147 Petunia axillaris HOM05D003923 ORTHO05D004553 4.4e-54 216.1 346 45.4
Manes.02G153800 Manihot esculenta HOM05D003923 ORTHO05D004553 1.7e-53 214.2 353 46.5
PSO447G0218 Papaver somniferum HOM05D003923 ORTHO05D004553 2.2e-53 213.8 371 45.6
A07p43360 Brassica napus HOM05D003923 ORTHO05D004553 3.8e-53 213.0 363 47.7
Migut.N02906 Erythranthe guttata HOM05D003923 ORTHO05D004553 3.8e-53 213.0 374 49.5
MELO3C010430.2 Cucumis melo HOM05D003923 ORTHO05D004553 6.4e-53 212.2 323 45.8
PSO210G6507 Papaver somniferum HOM05D003923 ORTHO05D004553 1.1e-52 211.5 372 46.5
AL2G38420 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 1.4e-52 211.1 366 48.9
BraA07t31856Z Brassica rapa HOM05D003923 ORTHO05D004553 1.4e-52 211.1 361 44.3
CARHR071570 Cardamine hirsuta HOM05D003923 ORTHO05D004553 1.4e-52 211.1 372 48.9
ClCG11G015440 Citrullus lanatus HOM05D003923 ORTHO05D004553 4.2e-52 209.5 266 54.9
Sp5g33250 Schrenkiella parvula HOM05D003923 ORTHO05D004553 7.1e-52 208.8 365 48.5
CsaV3_4G028650 Cucumis sativus L. HOM05D003923 ORTHO05D004553 1.6e-51 207.6 260 53.5
vmacro21241 Vaccinium macrocarpon HOM05D003923 ORTHO05D004553 2.1e-51 207.2 354 47.2
Nitab4.5_0000675g0060 Nicotiana tabacum HOM05D003923 ORTHO05D004553 3.5e-51 206.5 350 47.4
Atru.chr13.1213 Acer truncatum HOM05D003923 ORTHO05D004553 6.0e-51 205.7 291 51.5
Carub.0002s2500 Capsella rubella HOM05D003923 ORTHO05D004553 1.0e-50 204.9 361 48.8
A02p22020 Brassica napus HOM05D003923 ORTHO05D004553 1.7e-50 204.1 366 44.0
PGSC0003DMG400009479 Solanum tuberosum HOM05D003923 ORTHO05D004553 2.3e-50 203.8 363 47.1
Sed0005628 Sechium edule HOM05D003923 ORTHO05D004553 3.0e-50 203.4 360 42.8
Sopen04g029130 Solanum pennellii HOM05D003923 ORTHO05D004553 3.0e-50 203.4 356 47.5
Sopen00g003260 Solanum pennellii HOM05D003923 ORTHO05D004553 8.7e-50 201.8 310 46.8
AT1G78110 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 1.9e-49 200.7 364 46.2
BraA02t07205Z Brassica rapa HOM05D003923 ORTHO05D004553 3.3e-49 199.9 365 43.6
CsaV3_2G024220 Cucumis sativus L. HOM05D003923 ORTHO05D004553 4.3e-49 199.5 337 47.5
MELO3C011359.2 Cucumis melo HOM05D003923 ORTHO05D004553 7.3e-49 198.7 337 48.1
Thhalv10018798m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 9.6e-49 198.4 368 47.3
BcaC03g15795 Brassica carinata HOM05D003923 ORTHO05D004553 1.6e-48 197.6 365 43.8
PGR042G1650 Punica granatum HOM05D003923 ORTHO05D004553 1.6e-48 197.6 268 47.4
Carub.0001s2178 Capsella rubella HOM05D003923 ORTHO05D004553 2.1e-48 197.2 345 49.3
Nitab4.5_0001992g0040 Nicotiana tabacum HOM05D003923 ORTHO05D004553 4.8e-48 196.1 345 47.8
BolC2t09553H Brassica oleracea HOM05D003923 ORTHO05D004553 6.2e-48 195.7 362 42.3
ClCG08G011040 Citrullus lanatus HOM05D003923 ORTHO05D004553 8.1e-48 195.3 370 48.1
AL1G35680 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 1.4e-47 194.5 354 46.6
C02p35410 Brassica napus HOM05D003923 ORTHO05D004553 1.8e-47 194.1 362 37.3
BraA07t30411Z Brassica rapa HOM05D003923 ORTHO05D004553 1.8e-47 194.1 372 46.2
MSTRG.22149 Avicennia marina HOM05D003923 ORTHO05D004553 6.9e-47 192.2 222 52.7
CARHR022580 Cardamine hirsuta HOM05D003923 ORTHO05D004553 9.0e-47 191.8 345 44.9
A07p27700 Brassica napus HOM05D003923 ORTHO05D004553 1.5e-46 191.0 372 45.4
Sp1g19740 Schrenkiella parvula HOM05D003923 ORTHO05D004553 1.5e-46 191.0 349 43.6
AUR62027732 Chenopodium quinoa HOM05D003923 ORTHO05D004553 1.3e-45 188.0 209 49.3
Migut.O00455 Erythranthe guttata HOM05D003923 ORTHO05D004553 4.9e-45 186.0 232 56.5
BcaC08g45438 Brassica carinata HOM05D003923 ORTHO05D004553 7.1e-44 182.2 374 46.5
C06p30680 Brassica napus HOM05D003923 ORTHO05D004553 7.1e-44 182.2 374 46.5
BolC6t38232H Brassica oleracea HOM05D003923 ORTHO05D004553 7.1e-44 182.2 374 46.5
AT1G22230 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 9.3e-44 181.8 350 44.6
unitig_21.g20601 Utricularia gibba HOM05D003923 ORTHO05D004553 1.2e-43 181.4 355 36.6
Lalb_Chr17g0344141 Lupinus albus HOM05D003923 ORTHO05D004553 6.0e-43 179.1 351 37.0
BraA09t39730Z Brassica rapa HOM05D003923 ORTHO05D004553 1.0e-42 178.3 341 42.5
A09p42540 Brassica napus HOM05D003923 ORTHO05D004553 1.8e-42 177.6 341 42.8
BcaB07g32243 Brassica carinata HOM05D003923 ORTHO05D004553 3.0e-42 176.8 339 44.2
BcaC05g26150 Brassica carinata HOM05D003923 ORTHO05D004553 3.0e-42 176.8 339 44.2
C05p21350 Brassica napus HOM05D003923 ORTHO05D004553 3.0e-42 176.8 339 44.2
HanXRQChr05g0162921 Helianthus annuus HOM05D003923 ORTHO05D004553 1.1e-41 174.9 380 41.3
Solyc04g072940.4 Solanum lycopersicum HOM05D003923 ORTHO05D004553 1.5e-41 174.5 337 44.5
BolC5t30833H Brassica oleracea HOM05D003923 ORTHO05D004553 4.3e-41 172.9 339 44.5
BcaB07g32245 Brassica carinata HOM05D003923 ORTHO05D004553 2.1e-40 170.6 342 43.3
Lalb_Chr04g0253191 Lupinus albus HOM05D003923 ORTHO05D004553 2.8e-40 170.2 323 37.2
Thhalv10008264m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 1.3e-37 161.4 344 41.9
BraA07t29207Z Brassica rapa HOM05D003923 ORTHO05D004553 3.8e-37 159.8 341 37.2
Sed0003612 Sechium edule HOM05D003923 ORTHO05D004553 3.8e-37 159.8 280 37.1
Aqoxy6G00599 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 1.1e-36 158.3 360 35.3
Dinv13027 Davidia involucrata HOM05D003923 ORTHO05D004553 1.9e-36 157.5 247 44.1
A07p14630 Brassica napus HOM05D003923 ORTHO05D004553 2.1e-35 154.1 342 37.4
unitig_744.g24093 Utricularia gibba HOM05D003923 ORTHO05D004553 1.9e-33 147.5 340 35.9
SEGI_41423 Sequoiadendron giganteum HOM05D003923 ORTHO05D004553 3.3e-33 146.7 348 37.6
ATR0564G364 Amborella trichopoda HOM05D003923 ORTHO05D004553 1.3e-32 144.8 350 38.3
BcaC06g34942 Brassica carinata HOM05D003923 ORTHO05D004553 1.8e-31 141.0 341 34.0
Zm00001eb098670 Zea mays HOM05D003923 ORTHO05D004553 5.8e-30 136.0 372 35.2
C07p21520 Brassica napus HOM05D003923 ORTHO05D004553 1.4e-28 131.3 341 32.6
Aa31LG7G6170 Aethionema arabicum HOM05D003923 ORTHO05D004553 3.2e-28 130.2 349 33.0
CDE12G0356 Ceratophyllum demersum HOM05D003923 ORTHO05D004553 4.2e-28 129.8 200 38.5
SalBow7G0529 Salvia bowleyana HOM05D003923 ORTHO05D004553 5.5e-28 129.4 325 34.8
Zm00001eb255200 Zea mays HOM05D003923 ORTHO05D004553 3.5e-27 126.7 354 32.8
Sed0022190 Sechium edule HOM05D003923 ORTHO05D004553 1.5e-25 121.3 272 35.7
PSO541G2428 Papaver somniferum HOM05D003923 ORTHO05D004553 1.6e-24 117.9 432 32.9
PSO781G0128 Papaver somniferum HOM05D003923 ORTHO05D004553 1.6e-24 117.9 418 28.9
Zm00001eb194180 Zea mays HOM05D003923 ORTHO05D004553 2.2e-24 117.5 378 33.6
BolC7t42678H Brassica oleracea HOM05D003923 ORTHO05D004553 2.8e-24 117.1 161 47.8
Zm00001eb311240 Zea mays HOM05D003923 ORTHO05D004553 3.7e-24 116.7 376 29.8
HPP92_002331 Vanilla planifolia HOM05D003923 ORTHO05D004553 6.3e-24 115.9 362 39.2
A07p43420 Brassica napus HOM05D003923 ORTHO05D004553 1.6e-19 101.3 112 55.4
ATR0122G028 Amborella trichopoda HOM05D003923 ORTHO05D004553 2.7e-19 100.5 333 35.1
Os09g0370000 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 1.1e-15 88.6 177 34.5
GSVIVG01009013001 Vitis vinifera HOM05D003923 ORTHO05D004553 2.0e-14 84.3 210 34.3
Os02g0753400 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 2.6e-14 84.0 352 36.9
BolC8t49783H Brassica oleracea HOM05D003923 ORTHO05D004553 2.4e-07 60.8 102 48.0
unitig_578.g16204 Utricularia gibba HOM05D003923 ORTHO05D004553 4.1e-07 60.1 243 25.9
ATR0153G027 Amborella trichopoda HOM05D003923 ORTHO05D004553 5.3e-07 59.7 167 34.1
C08p21440 Brassica napus HOM05D003923 ORTHO05D004553 7.0e-07 59.3 59 54.2


User provided reference genes

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