Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc22g0005540 Simmondsia chinensis HOM05D006148 ORTHO05D007955 1.0e-71 273.5 153 100.0
Hund11457 Selenicereus undatus HOM05D006148 ORTHO05D007955 8.5e-47 190.7 133 75.9
EL10Ac5g12797 Beta vulgaris HOM05D006148 ORTHO05D007955 1.5e-46 189.9 128 78.1
AUR62017180 Chenopodium quinoa HOM05D006148 ORTHO05D007955 1.2e-45 186.8 129 76.0
CSS0033428 Camellia sinensis var. sinensis HOM05D006148 ORTHO05D007955 1.4e-41 173.3 154 66.9
MSTRG.9371 Avicennia marina HOM05D006148 ORTHO05D007955 1.8e-41 172.9 152 65.8
Cc02_g08620 Coffea canephora HOM05D006148 ORTHO05D007955 7.0e-41 171.0 154 64.3
Dinv21692 Davidia involucrata HOM05D006148 ORTHO05D007955 1.2e-40 170.2 154 64.9
Oeu040676.1 Olea europaea HOM05D006148 ORTHO05D007955 1.6e-40 169.9 144 66.0
Hma1.2p1_0840F.1_g226570 Hydrangea macrophylla HOM05D006148 ORTHO05D007955 2.0e-40 169.5 140 67.1
Gohir.D12G216200 Gossypium hirsutum HOM05D006148 ORTHO05D007955 5.9e-40 167.9 155 63.2
Gorai.008G231600 Gossypium raimondii HOM05D006148 ORTHO05D007955 5.9e-40 167.9 155 63.2
TWI15G0129 Tripterygium wilfordii HOM05D006148 ORTHO05D007955 7.7e-40 167.5 154 61.7
Rhsim07G0118900 Rhododendron simsii HOM05D006148 ORTHO05D007955 1.0e-39 167.2 164 61.0
Ciclev10022620m.g Citrus clementina HOM05D006148 ORTHO05D007955 1.3e-39 166.8 139 67.6
Migut.I00620 Erythranthe guttata HOM05D006148 ORTHO05D007955 1.3e-39 166.8 153 60.8
Manes.02G044300 Manihot esculenta HOM05D006148 ORTHO05D007955 1.3e-39 166.8 153 62.1
SGA_v2.0_scaffold377G50308 Striga asiatica HOM05D006148 ORTHO05D007955 1.3e-39 166.8 142 65.5
Gohir.A12G213600 Gossypium hirsutum HOM05D006148 ORTHO05D007955 2.3e-39 166.0 155 62.6
SGA_v2.0_scaffold40G15681 Striga asiatica HOM05D006148 ORTHO05D007955 2.3e-39 166.0 142 65.5
TAR375G0576 Trochodendron aralioides HOM05D006148 ORTHO05D007955 3.8e-39 165.2 151 62.9
DCAR_005581 Daucus carota HOM05D006148 ORTHO05D007955 1.1e-38 163.7 144 62.5
Duzib068G0643 Durio zibethinus HOM05D006148 ORTHO05D007955 1.5e-38 163.3 154 60.4
MBI15_g47175_MAGBIO Magnolia biondii HOM05D006148 ORTHO05D007955 1.5e-38 163.3 141 66.7
Oeu017209.1 Olea europaea HOM05D006148 ORTHO05D007955 1.5e-38 163.3 142 64.8
vmacro14126 Vaccinium macrocarpon HOM05D006148 ORTHO05D007955 1.5e-38 163.3 134 68.7
Nitab4.5_0000506g0080 Nicotiana tabacum HOM05D006148 ORTHO05D007955 1.9e-38 162.9 144 62.5
Solyc08g077970.2 Solanum lycopersicum HOM05D006148 ORTHO05D007955 1.9e-38 162.9 144 62.5
Aqoxy7G03487 Aquilegia oxysepala HOM05D006148 ORTHO05D007955 2.5e-38 162.5 144 62.5
PGSC0003DMG400026249 Solanum tuberosum HOM05D006148 ORTHO05D007955 2.5e-38 162.5 144 61.8
Nitab4.5_0003456g0030 Nicotiana tabacum HOM05D006148 ORTHO05D007955 5.6e-38 161.4 144 62.5
CAN.G761.17 Capsicum annuum HOM05D006148 ORTHO05D007955 7.3e-38 161.0 144 60.4
Actinidia10861 Actinidia chinensis HOM05D006148 ORTHO05D007955 9.5e-38 160.6 154 61.0
Prupe.5G058400 Prunus persica HOM05D006148 ORTHO05D007955 9.5e-38 160.6 147 63.3
Sopen08g026480 Solanum pennellii HOM05D006148 ORTHO05D007955 9.5e-38 160.6 144 61.8
CANSAT21G1845 Cannabis sativa HOM05D006148 ORTHO05D007955 1.6e-37 159.8 156 60.3
Ca_20510_v3 Cicer arietinum L. HOM05D006148 ORTHO05D007955 2.1e-37 159.5 150 58.7
unitig_747.g21320 Utricularia gibba HOM05D006148 ORTHO05D007955 4.7e-37 158.3 143 62.9
CiPaw.12G047200 Carya illinoinensis HOM05D006148 ORTHO05D007955 6.1e-37 157.9 139 62.6
ClCG09G012770 Citrullus lanatus HOM05D006148 ORTHO05D007955 6.1e-37 157.9 137 62.8
Nitab4.5_0007628g0010 Nicotiana tabacum HOM05D006148 ORTHO05D007955 6.1e-37 157.9 152 59.9
Thecc.03G242700 Theobroma cacao HOM05D006148 ORTHO05D007955 6.1e-37 157.9 123 71.5
unitig_46.g17987 Utricularia gibba HOM05D006148 ORTHO05D007955 6.1e-37 157.9 141 63.1
Eucgr.D02128 Eucalyptus grandis HOM05D006148 ORTHO05D007955 1.0e-36 157.1 148 60.8
MD04G1051900 Malus domestica HOM05D006148 ORTHO05D007955 1.4e-36 156.8 141 64.5
Sed0014825 Sechium edule HOM05D006148 ORTHO05D007955 1.8e-36 156.4 140 60.0
CSS0030063 Camellia sinensis var. sinensis HOM05D006148 ORTHO05D007955 4.0e-36 155.2 143 65.0
Sopen06g021070 Solanum pennellii HOM05D006148 ORTHO05D007955 4.0e-36 155.2 144 58.3
PGSC0003DMG400026577 Solanum tuberosum HOM05D006148 ORTHO05D007955 5.2e-36 154.8 144 58.3
THA.LOC104807925 Tarenaya hassleriana HOM05D006148 ORTHO05D007955 5.2e-36 154.8 122 68.9
VMungo0331G0425 Vigna mungo HOM05D006148 ORTHO05D007955 6.8e-36 154.5 121 71.1
Lj3g0001636 Lotus japonicus HOM05D006148 ORTHO05D007955 8.9e-36 154.1 129 65.1
MD06G1048200 Malus domestica HOM05D006148 ORTHO05D007955 8.9e-36 154.1 145 62.1
Rhsim07G0118700 Rhododendron simsii HOM05D006148 ORTHO05D007955 8.9e-36 154.1 143 64.3
Sed0021147 Sechium edule HOM05D006148 ORTHO05D007955 8.9e-36 154.1 140 58.6
Solyc06g060920.3 Solanum lycopersicum HOM05D006148 ORTHO05D007955 8.9e-36 154.1 144 58.3
Peaxi162Scf00190g00088 Petunia axillaris HOM05D006148 ORTHO05D007955 1.2e-35 153.7 125 66.4
PGR031G0321 Punica granatum HOM05D006148 ORTHO05D007955 1.5e-35 153.3 150 62.0
CsaV3_3G049830 Cucumis sativus L. HOM05D006148 ORTHO05D007955 2.0e-35 152.9 141 61.0
Glyma.16G092500 Glycine max HOM05D006148 ORTHO05D007955 3.4e-35 152.1 144 61.8
Phvul.010G018500 Phaseolus vulgaris HOM05D006148 ORTHO05D007955 3.4e-35 152.1 137 61.3
Atru.chr9.1220 Acer truncatum HOM05D006148 ORTHO05D007955 5.7e-35 151.4 141 61.0
Psat5g091640 Pisum sativum HOM05D006148 ORTHO05D007955 5.7e-35 151.4 142 59.9
ECA248G1075 Erigeron canadensis HOM05D006148 ORTHO05D007955 2.2e-34 149.4 152 53.9
Lalb_Chr18g0047251 Lupinus albus HOM05D006148 ORTHO05D007955 2.2e-34 149.4 142 62.0
Medtr3g086600 Medicago truncatula HOM05D006148 ORTHO05D007955 2.2e-34 149.4 148 54.7
THA.LOC104814463 Tarenaya hassleriana HOM05D006148 ORTHO05D007955 2.2e-34 149.4 157 55.4
Carub.0007s2441 Capsella rubella HOM05D006148 ORTHO05D007955 2.9e-34 149.1 152 55.3
Glyma.09G078400 Glycine max HOM05D006148 ORTHO05D007955 2.9e-34 149.1 109 70.6
Potri.012G038600 Populus trichocarpa HOM05D006148 ORTHO05D007955 2.9e-34 149.1 130 61.5
RcHm_v2.0_Chr7g0205301 Rosa chinensis HOM05D006148 ORTHO05D007955 2.9e-34 149.1 141 57.4
Lj2A228G47 Lonicera japonica HOM05D006148 ORTHO05D007955 4.9e-34 148.3 109 74.3
TPR.G30538 Trifolium pratense HOM05D006148 ORTHO05D007955 4.9e-34 148.3 144 59.0
BcaC09g50434 Brassica carinata HOM05D006148 ORTHO05D007955 8.3e-34 147.5 146 60.3
MELO3C003333.2 Cucumis melo HOM05D006148 ORTHO05D007955 8.3e-34 147.5 124 63.7
FvH4_5g20230 Fragaria vesca HOM05D006148 ORTHO05D007955 8.3e-34 147.5 141 57.4
FAN13G2154 Fragaria x ananassa HOM05D006148 ORTHO05D007955 8.3e-34 147.5 125 63.2
FAN13G3051 Fragaria x ananassa HOM05D006148 ORTHO05D007955 8.3e-34 147.5 125 63.2
Lsat_1_v5_gn_3_16181 Lactuca sativa HOM05D006148 ORTHO05D007955 8.3e-34 147.5 152 53.9
C01p25460 Brassica napus HOM05D006148 ORTHO05D007955 1.1e-33 147.1 146 59.6
BolC1t02497H Brassica oleracea HOM05D006148 ORTHO05D007955 1.8e-33 146.4 160 57.5
HPP92_005702 Vanilla planifolia HOM05D006148 ORTHO05D007955 1.8e-33 146.4 124 65.3
A01p20300 Brassica napus HOM05D006148 ORTHO05D007955 2.4e-33 146.0 160 56.9
BraA01t01958Z Brassica rapa HOM05D006148 ORTHO05D007955 2.4e-33 146.0 160 57.5
COL.COLO4_07508 Corchorus olitorius HOM05D006148 ORTHO05D007955 2.4e-33 146.0 145 56.6
THA.LOC104812735 Tarenaya hassleriana HOM05D006148 ORTHO05D007955 2.4e-33 146.0 148 55.4
SalBow1G4160 Salvia bowleyana HOM05D006148 ORTHO05D007955 4.1e-33 145.2 123 65.9
DCAR_008334 Daucus carota HOM05D006148 ORTHO05D007955 5.4e-33 144.8 138 59.4
BcaNung00135 Brassica carinata HOM05D006148 ORTHO05D007955 7.0e-33 144.4 164 56.1
Lj3A721T48 Lonicera japonica HOM05D006148 ORTHO05D007955 9.2e-33 144.1 143 59.4
Lalb_Chr15g0078661 Lupinus albus HOM05D006148 ORTHO05D007955 1.2e-32 143.7 142 56.3
Sp7g17180 Schrenkiella parvula HOM05D006148 ORTHO05D007955 1.2e-32 143.7 151 53.6
Aa31LG2G13090 Aethionema arabicum HOM05D006148 ORTHO05D007955 1.6e-32 143.3 164 54.3
HanXRQChr17g0550021 Helianthus annuus HOM05D006148 ORTHO05D007955 1.6e-32 143.3 125 61.6
CDE04G1348 Ceratophyllum demersum HOM05D006148 ORTHO05D007955 3.5e-32 142.1 141 57.4
arahy.Tifrunner.gnm1.ann1.0GR2GF Arachis hypogaea HOM05D006148 ORTHO05D007955 5.0e-31 138.3 142 52.8
arahy.Tifrunner.gnm1.ann1.L2DS42 Arachis hypogaea HOM05D006148 ORTHO05D007955 5.0e-31 138.3 142 52.8
Sabra12G0027000 Salix brachista HOM05D006148 ORTHO05D007955 6.6e-31 137.9 141 54.6
FAN04G0567 Fragaria x ananassa HOM05D006148 ORTHO05D007955 1.5e-30 136.7 147 54.4
PSO541G2943 Papaver somniferum HOM05D006148 ORTHO05D007955 1.2e-29 133.7 128 57.0
CARHR223570 Cardamine hirsuta HOM05D006148 ORTHO05D007955 1.6e-29 133.3 162 51.2
AT4G17010 Arabidopsis thaliana HOM05D006148 ORTHO05D007955 1.4e-28 130.2 150 54.0
Thhalv10026445m.g Eutrema salsugineum HOM05D006148 ORTHO05D007955 1.4e-28 130.2 151 50.3
PSO675G9254 Papaver somniferum HOM05D006148 ORTHO05D007955 1.4e-28 130.2 127 55.9
Ah.07g196390 Amaranthus hybridus HOM05D006148 ORTHO05D007955 1.8e-28 129.8 112 65.2
FAN08G3523 Fragaria x ananassa HOM05D006148 ORTHO05D007955 4.0e-28 128.6 183 45.9
Haze_05448 Corylus avellana HOM05D006148 ORTHO05D007955 5.2e-28 128.3 217 42.4
Os04g0431800 Oryza sativa ssp. japonica HOM05D006148 ORTHO05D007955 1.2e-27 127.1 145 51.7
Nn1g00796 Nelumbo nucifera HOM05D006148 ORTHO05D007955 2.6e-27 125.9 120 60.0
AL7G37710 Arabidopsis lyrata HOM05D006148 ORTHO05D007955 7.5e-27 124.4 152 50.0
Zm00001eb422600 Zea mays HOM05D006148 ORTHO05D007955 7.5e-27 124.4 107 58.9
Os02g0494600 Oryza sativa ssp. japonica HOM05D006148 ORTHO05D007955 2.9e-26 122.5 143 50.3
AUR62010708 Chenopodium quinoa HOM05D006148 ORTHO05D007955 3.7e-26 122.1 129 56.6
AUR62027260 Chenopodium quinoa HOM05D006148 ORTHO05D007955 3.7e-26 122.1 129 56.6
ATR0767G234 Amborella trichopoda HOM05D006148 ORTHO05D007955 4.9e-26 121.7 138 50.7
Hma1.2p1_1008F.1_g247180 Hydrangea macrophylla HOM05D006148 ORTHO05D007955 4.6e-24 115.2 109 58.7
QL12p009037 Quercus lobata HOM05D006148 ORTHO05D007955 7.8e-24 114.4 76 77.6
vmacro00048 Vaccinium macrocarpon HOM05D006148 ORTHO05D007955 7.3e-22 107.8 152 46.7
MBI06_g25325_MAGBIO Magnolia biondii HOM05D006148 ORTHO05D007955 1.2e-19 100.5 106 56.6
Lj2A721G5 Lonicera japonica HOM05D006148 ORTHO05D007955 1.7e-15 86.7 70 70.0
SEGI_12345 Sequoiadendron giganteum HOM05D006148 ORTHO05D007955 1.9e-14 83.2 134 36.6
Cpa.g.sc1152.2 Carica papaya HOM05D006148 ORTHO05D007955 5.8e-11 71.6 76 51.3
Nitab4.5_0000500g0150 Nicotiana tabacum HOM05D006148 ORTHO05D007955 1.6e-08 63.5 125 43.2
Oeu017208.1 Olea europaea HOM05D002196 ORTHO05D002565 3.3e-06 55.8 66 51.5


User provided reference genes

Program Settings