Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc22g0004990 Simmondsia chinensis HOM05D000749 ORTHO05D005685 2.4e-137 492.3 269 100.0
Sc07g0010060 Simmondsia chinensis HOM05D000749 ORTHO05D005685 1.9e-97 359.8 276 67.0
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 3.9e-79 298.9 260 58.8
Hund11388 Selenicereus undatus HOM05D000749 ORTHO05D005685 6.7e-79 298.1 264 58.3
Hma1.2p1_0359F.1_g135200 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 9.6e-78 294.3 271 56.1
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 1.3e-77 293.9 274 60.2
Dinv37528 Davidia involucrata HOM05D000749 ORTHO05D005685 3.7e-77 292.4 276 58.7
QL02p030312 Quercus lobata HOM05D000749 ORTHO05D005685 1.8e-76 290.0 263 60.1
CSS0029811 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 2.4e-76 289.7 268 56.3
CSS0041880 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 3.1e-76 289.3 268 56.3
AUR62019844 Chenopodium quinoa HOM05D000749 ORTHO05D005685 4.1e-76 288.9 273 56.4
AUR62010845 Chenopodium quinoa HOM05D000749 ORTHO05D005685 2.0e-75 286.6 267 57.7
Sed0020991 Sechium edule HOM05D000749 ORTHO05D005685 3.4e-75 285.8 272 56.6
Haze_09069 Corylus avellana HOM05D000749 ORTHO05D005685 5.9e-75 285.0 255 58.4
Gorai.008G254700 Gossypium raimondii HOM05D000749 ORTHO05D005685 1.0e-74 284.3 254 57.5
ClCG01G001690 Citrullus lanatus HOM05D000749 ORTHO05D005685 1.3e-74 283.9 276 54.7
Gohir.A12G236700 Gossypium hirsutum HOM05D000749 ORTHO05D005685 2.9e-74 282.7 254 57.5
CSS0014286 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 3.8e-74 282.3 270 55.6
Carub.0007s1721 Capsella rubella HOM05D000749 ORTHO05D005685 5.0e-74 282.0 259 57.5
CSS0022068 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 6.5e-74 281.6 270 55.6
Actinidia22163 Actinidia chinensis HOM05D000749 ORTHO05D005685 1.4e-73 280.4 268 56.3
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 1.4e-73 280.4 269 56.1
Thecc.03G298600 Theobroma cacao HOM05D000749 ORTHO05D005685 1.4e-73 280.4 255 57.6
Potri.003G140500 Populus trichocarpa HOM05D000749 ORTHO05D005685 1.9e-73 280.0 255 58.0
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 5.5e-73 278.5 243 59.7
Manes.01G049300 Manihot esculenta HOM05D000749 ORTHO05D005685 5.5e-73 278.5 256 55.5
TWI81G0603 Tripterygium wilfordii HOM05D000749 ORTHO05D005685 7.2e-73 278.1 269 55.0
AL7G29440 Arabidopsis lyrata HOM05D000749 ORTHO05D005685 9.3e-73 277.7 269 56.9
RcHm_v2.0_Chr7g0194721 Rosa chinensis HOM05D000749 ORTHO05D005685 1.2e-72 277.3 269 55.0
PGR042G1555 Punica granatum HOM05D000749 ORTHO05D005685 2.7e-72 276.2 257 57.2
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 4.6e-72 275.4 204 66.7
FvH4_5g04660 Fragaria vesca HOM05D000749 ORTHO05D005685 4.6e-72 275.4 271 54.6
Migut.A00638 Erythranthe guttata HOM05D000749 ORTHO05D005685 6.1e-72 275.0 254 54.7
FAN13G3049 Fragaria x ananassa HOM05D000749 ORTHO05D005685 6.1e-72 275.0 209 66.5
FAN18G2450 Fragaria x ananassa HOM05D000749 ORTHO05D005685 6.1e-72 275.0 271 54.6
FAN18G0718 Fragaria x ananassa HOM05D000749 ORTHO05D005685 7.9e-72 274.6 271 54.2
Prupe.5G120700 Prunus persica HOM05D000749 ORTHO05D004893 7.9e-72 274.6 276 54.0
vmacro11358 Vaccinium macrocarpon HOM05D000749 ORTHO05D005685 7.9e-72 274.6 270 54.1
Lj2A167G41 Lonicera japonica HOM05D000749 ORTHO05D005685 1.8e-71 273.5 250 56.8
Aa31LG6G7160 Aethionema arabicum HOM05D000749 ORTHO05D005685 2.3e-71 273.1 269 56.1
Potri.001G091100 Populus trichocarpa HOM05D000749 ORTHO05D005685 2.3e-71 273.1 253 58.9
Hma1.2p1_0440F.1_g153310 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 8.7e-71 271.2 281 54.1
Sp7g21860 Schrenkiella parvula HOM05D000749 ORTHO05D005685 1.1e-70 270.8 269 54.6
BcaNung04079 Brassica carinata HOM05D000749 ORTHO05D005685 1.9e-70 270.0 195 69.7
TAR629G1059 Trochodendron aralioides HOM05D000749 ORTHO05D005685 1.9e-70 270.0 268 54.1
C07p53200 Brassica napus HOM05D000749 ORTHO05D005685 2.5e-70 269.6 270 54.8
BolC7t45815H Brassica oleracea HOM05D000749 ORTHO05D005685 2.5e-70 269.6 270 54.8
MD06G1107400 Malus domestica HOM05D000749 ORTHO05D005685 2.5e-70 269.6 215 64.2
AT4G23895 Arabidopsis thaliana HOM05D000749 ORTHO05D004893 4.3e-70 268.9 265 54.7
COL.COLO4_10708 Corchorus olitorius HOM05D000749 ORTHO05D005685 4.3e-70 268.9 254 55.9
Cfa012001 Carpinus fangiana HOM05D000749 ORTHO05D004893 7.4e-70 268.1 243 58.0
FAN13G2768 Fragaria x ananassa HOM05D000749 ORTHO05D005685 7.4e-70 268.1 270 53.7
MSTRG.25679 Avicennia marina HOM05D000749 ORTHO05D005685 9.7e-70 267.7 193 66.3
THA.LOC104806439 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 9.7e-70 267.7 189 70.4
BraA03t14551Z Brassica rapa HOM05D000749 ORTHO05D005685 1.6e-69 266.9 199 67.3
CiPaw.12G082400 Carya illinoinensis HOM05D000749 ORTHO05D005685 1.6e-69 266.9 200 67.5
SGA_v2.0_scaffold305G47984 Striga asiatica HOM05D000749 ORTHO05D005685 1.6e-69 266.9 255 56.1
BcaNung04243 Brassica carinata HOM05D000749 ORTHO05D005685 2.2e-69 266.5 199 67.3
A03p54840 Brassica napus HOM05D000749 ORTHO05D005685 3.7e-69 265.8 262 54.2
FAN08G1955 Fragaria x ananassa HOM05D000749 ORTHO05D005685 4.8e-69 265.4 281 52.3
Solyc12g055950.2 Solanum lycopersicum HOM05D000749 ORTHO05D005685 6.3e-69 265.0 261 55.2
CANSAT21G1880 Cannabis sativa HOM05D000749 ORTHO05D005685 1.1e-68 264.2 269 55.4
Sopen12g024420 Solanum pennellii HOM05D000749 ORTHO05D005685 1.8e-68 263.5 261 54.8
Atru.chr9.1976 Acer truncatum HOM05D000749 ORTHO05D005685 2.4e-68 263.1 204 68.1
Atru.chr9.1991 Acer truncatum HOM05D000749 ORTHO05D005685 2.4e-68 263.1 204 68.1
EL10Ac5g12920 Beta vulgaris HOM05D000749 ORTHO05D004893 2.4e-68 263.1 250 56.8
HanXRQChr17g0534821 Helianthus annuus HOM05D000749 ORTHO05D005685 2.4e-68 263.1 254 53.5
Sabra03G0101500 Salix brachista HOM05D000749 ORTHO05D005685 2.4e-68 263.1 277 52.7
Oeu063515.1 Olea europaea HOM05D000749 ORTHO05D005685 4.1e-68 262.3 254 54.7
Hund14218 Selenicereus undatus HOM05D000749 ORTHO05D005685 5.3e-68 261.9 183 67.2
CiPaw.11G120800 Carya illinoinensis HOM05D000749 ORTHO05D005685 6.9e-68 261.5 269 53.9
CARHR231300 Cardamine hirsuta HOM05D000749 ORTHO05D005685 2.0e-67 260.0 203 65.5
Ciclev10022306m.g Citrus clementina HOM05D000749 ORTHO05D005685 2.0e-67 260.0 188 66.5
Phvul.002G298000 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 2.0e-67 260.0 273 53.5
SalBow1G4618 Salvia bowleyana HOM05D000749 ORTHO05D005685 2.0e-67 260.0 262 53.4
ECA246G0427 Erigeron canadensis HOM05D000749 ORTHO05D005685 2.6e-67 259.6 252 53.6
Glyma.08G022600 Glycine max HOM05D000749 ORTHO05D005685 2.6e-67 259.6 261 54.8
Gohir.D12G237900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 2.6e-67 259.6 172 70.3
Nitab4.5_0000726g0060 Nicotiana tabacum HOM05D000749 ORTHO05D005685 2.6e-67 259.6 258 54.7
PSO135G0827 Papaver somniferum HOM05D000749 ORTHO05D005685 3.4e-67 259.2 207 62.8
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 5.9e-67 258.5 273 52.0
PSO384G3968 Papaver somniferum HOM05D000749 ORTHO05D005685 1.0e-66 257.7 203 63.5
Rhsim02G0244300 Rhododendron simsii HOM05D000749 ORTHO05D005685 1.0e-66 257.7 257 54.1
THA.LOC104813042 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 1.3e-66 257.3 200 65.5
Sabra01G0067500 Salix brachista HOM05D000749 ORTHO05D005685 3.8e-66 255.8 266 52.6
Nitab4.5_0004010g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.1e-65 254.2 243 57.2
arahy.Tifrunner.gnm1.ann1.1JV6NN Arachis hypogaea HOM05D000749 ORTHO05D005685 1.4e-65 253.8 261 55.6
CAN.G390.4 Capsicum annuum HOM05D000749 ORTHO05D005685 1.9e-65 253.4 254 52.8
Duzib205G1799 Durio zibethinus HOM05D000749 ORTHO05D005685 1.9e-65 253.4 253 53.4
Cc08_g16120 Coffea canephora HOM05D000749 ORTHO05D005685 2.5e-65 253.1 173 69.4
Thhalv10026064m.g Eutrema salsugineum HOM05D000749 ORTHO05D005685 2.5e-65 253.1 171 72.5
Gohir.D08G125900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 4.2e-65 252.3 179 65.9
Lsat_1_v5_gn_3_10900 Lactuca sativa HOM05D000749 ORTHO05D004893 4.2e-65 252.3 265 50.9
Lalb_Chr09g0332451 Lupinus albus HOM05D000749 ORTHO05D005685 4.2e-65 252.3 261 53.3
MD14G1129100 Malus domestica HOM05D000749 ORTHO05D005685 4.2e-65 252.3 173 69.9
DCAR_029896 Daucus carota HOM05D000749 ORTHO05D005685 1.2e-64 250.8 259 52.9
Gorai.004G132800 Gossypium raimondii HOM05D000749 ORTHO05D005685 2.1e-64 250.0 187 63.1
Medtr8g099455 Medicago truncatula HOM05D000749 ORTHO05D005685 2.7e-64 249.6 194 66.0
BcaB03g12399 Brassica carinata HOM05D000749 ORTHO05D005685 4.6e-64 248.8 198 63.6
arahy.Tifrunner.gnm1.ann1.YIX88E Arachis hypogaea HOM05D000749 ORTHO05D005685 1.0e-63 247.7 261 54.8
Peaxi162Scf00117g01125 Petunia axillaris HOM05D000749 ORTHO05D005685 1.4e-63 247.3 266 53.0
TPR.G25592 Trifolium pratense HOM05D000749 ORTHO05D005685 1.8e-63 246.9 187 65.8
MELO3C005770.2 Cucumis melo HOM05D000749 ORTHO05D005685 2.3e-63 246.5 192 64.1
Glyma.05G216800 Glycine max HOM05D000749 ORTHO05D005685 2.3e-63 246.5 261 53.3
arahy.Tifrunner.gnm1.ann1.JB76D2 Arachis hypogaea HOM05D000749 ORTHO05D005685 3.0e-63 246.1 175 66.9
Lj4g0022263 Lotus japonicus HOM05D000749 ORTHO05D005685 1.1e-62 244.2 268 51.9
VMungo1215G3291 Vigna mungo HOM05D000749 ORTHO05D005685 2.0e-62 243.4 199 62.8
LjContig00312_ERROPOS870357g0005368 Lotus japonicus HOM05D000749 ORTHO05D005685 2.6e-62 243.0 183 65.6
Medtr5g009310 Medicago truncatula HOM05D000749 ORTHO05D005685 2.6e-62 243.0 183 66.7
MBI06_g08470_MAGBIO Magnolia biondii HOM05D000749 ORTHO05D005685 3.3e-62 242.7 253 50.2
Lsat_1_v5_gn_6_83941 Lactuca sativa HOM05D000749 ORTHO05D004893 4.4e-62 242.3 270 48.1
Ca_17481_v3 Cicer arietinum L. HOM05D000749 ORTHO05D004893 7.4e-62 241.5 193 64.2
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 7.4e-62 241.5 193 64.2
Eucgr.E00870 Eucalyptus grandis HOM05D000749 ORTHO05D005685 7.4e-62 241.5 296 47.6
Glyma.11G017700 Glycine max HOM05D000749 ORTHO05D005685 7.4e-62 241.5 184 66.3
CDE10G0735 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 1.7e-61 240.4 208 60.6
Nn1g00225 Nelumbo nucifera HOM05D000749 ORTHO05D005685 4.8e-61 238.8 169 69.8
Aqoxy7G00094 Aquilegia oxysepala HOM05D000749 ORTHO05D005685 9.1e-60 234.6 263 51.0
Lalb_Chr09g0320651 Lupinus albus HOM05D000749 ORTHO05D005685 2.6e-59 233.0 176 64.8
Nitab4.5_0006775g0110 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.3e-58 230.7 187 62.0
Zm00001eb297840 Zea mays HOM05D000749 ORTHO05D005685 3.8e-58 229.2 197 56.9
Sed0010333 Sechium edule HOM05D000749 ORTHO05D005685 6.5e-58 228.4 192 59.9
Psat7g025640 Pisum sativum HOM05D000749 ORTHO05D005685 1.1e-57 227.6 243 53.5
HPP92_008182 Vanilla planifolia HOM05D000749 ORTHO05D005685 1.4e-57 227.3 189 58.7
HanXRQChr03g0083461 Helianthus annuus HOM05D000749 ORTHO05D005685 9.4e-57 224.6 184 59.8
HanXRQChr13g0415321 Helianthus annuus HOM05D000749 ORTHO05D005685 2.1e-56 223.4 191 58.6
Os05g0595500 Oryza sativa ssp. japonica HOM05D000749 ORTHO05D005685 2.7e-56 223.0 189 55.6
SalBow1G0265 Salvia bowleyana HOM05D000749 ORTHO05D005685 4.7e-56 222.2 349 40.1
unitig_88.g27644 Utricularia gibba HOM05D000749 ORTHO05D005685 4.7e-56 222.2 158 63.3
ECA240G0537 Erigeron canadensis HOM05D000749 ORTHO05D005685 5.2e-55 218.8 179 58.7
Peaxi162Scf00074g00738 Petunia axillaris HOM05D000749 ORTHO05D005685 8.8e-55 218.0 192 59.4
CAN.G1804.10 Capsicum annuum HOM05D000749 ORTHO05D005685 4.4e-54 215.7 171 59.6
Solyc08g082420.3 Solanum lycopersicum HOM05D000749 ORTHO05D005685 3.7e-53 212.6 191 56.0
Sopen08g030670 Solanum pennellii HOM05D000749 ORTHO05D005685 3.7e-53 212.6 191 56.0
PGSC0003DMG400004994 Solanum tuberosum HOM05D000749 ORTHO05D005685 3.7e-53 212.6 162 64.2
PGSC0003DMG400012277 Solanum tuberosum HOM05D000749 ORTHO05D005685 3.7e-53 212.6 171 60.2
unitig_0.g1147 Utricularia gibba HOM05D000749 ORTHO05D005685 6.3e-53 211.8 189 56.1
BolC3t20284H Brassica oleracea HOM05D000749 ORTHO05D005685 8.2e-53 211.5 199 57.8
Phvul.002G164200 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 1.4e-52 210.7 184 58.2
Nitab4.5_0001210g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 3.8e-50 202.6 138 68.8
Gohir.D12G237901 Gossypium hirsutum HOM05D000749 ORTHO05D005685 3.2e-49 199.5 128 72.7
ECA240G3820 Erigeron canadensis HOM05D000749 ORTHO05D005685 5.5e-49 198.7 139 66.9
BcaC01g00478 Brassica carinata HOM05D000749 ORTHO05D005685 1.6e-48 197.2 225 51.1
C03p80360 Brassica napus HOM05D000749 ORTHO05D005685 1.6e-48 197.2 225 51.1
MSTRG.13887 Avicennia marina HOM05D000749 ORTHO05D005685 8.8e-47 191.4 118 69.5
Gohir.A08G112900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 8.8e-47 191.4 140 63.6
ATR0602G082 Amborella trichopoda HOM05D000749 ORTHO05D005685 5.7e-46 188.7 184 54.3
CDE10G1055 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 4.7e-40 169.1 149 61.1
Mapoly0105s0026 Marchantia polymorpha HOM05D000749 ORTHO05D005685 4.0e-39 166.0 167 47.9
TPR.G3419 Trifolium pratense HOM05D000749 ORTHO05D005685 5.7e-38 162.2 191 49.7
BcaC09g50933 Brassica carinata HOM05D000749 ORTHO05D005685 1.3e-29 134.4 115 59.1
Pp3c8_7850 Physcomitrium patens HOM05D000749 ORTHO05D005685 3.1e-28 129.8 190 38.4
AagrBONN_evm.TU.Sc2ySwM_344.2051 Anthoceros agrestis HOM05D000749 ORTHO05D005685 2.5e-17 93.6 95 50.5
TPR.G18933 Trifolium pratense HOM05D000749 ORTHO05D005685 5.6e-17 92.4 71 64.8
Pp3c24_4620 Physcomitrium patens HOM05D000749 ORTHO05D005685 6.2e-16 89.0 113 46.0
CBR_g4807 Chara braunii HOM05D000749 ORTHO05D005685 3.1e-15 86.7 164 32.9
FAN04G2853 Fragaria x ananassa HOM05D000749 ORTHO05D004893 2.6e-14 83.6 60 63.3
RcHm_v2.0_Chr1g0343991 Rosa chinensis HOM05D000749 ORTHO05D005685 2.0e-11 73.9 48 64.6
Cpa.g.sc79.31 Carica papaya HOM05D000749 ORTHO05D005685 1.1e-09 68.2 130 37.7


User provided reference genes

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