Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc22g0004980 Simmondsia chinensis HOM05D005115 ORTHO05D005703 2.2e-103 379.0 201 100.0
Gohir.D09G185000 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.5e-54 216.9 205 63.9
Duzib068G0330 Durio zibethinus HOM05D005115 ORTHO05D005703 5.6e-54 214.9 202 64.9
AUR62010847 Chenopodium quinoa HOM05D000034 ORTHO05D005703 1.2e-53 213.8 200 61.5
Gorai.006G207500 Gossypium raimondii HOM05D005115 ORTHO05D005703 6.1e-53 211.5 206 62.6
Gohir.A09G190300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.0e-52 210.7 207 62.3
Thecc.03G298900 Theobroma cacao HOM05D005115 ORTHO05D005703 3.1e-52 209.1 206 61.2
TAR375G0477 Trochodendron aralioides HOM05D005115 ORTHO05D005703 8.9e-52 207.6 200 62.0
Duzib084G1297 Durio zibethinus HOM05D005115 ORTHO05D005703 1.5e-51 206.8 205 62.4
TAR375G0257 Trochodendron aralioides HOM05D005115 ORTHO05D005703 2.6e-51 206.1 200 61.0
Solyc08g008350.3 Solanum lycopersicum HOM05D005115 ORTHO05D005703 4.4e-51 205.3 198 61.1
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 7.5e-51 204.5 202 62.9
Dinv37526 Davidia involucrata HOM05D005115 ORTHO05D005703 1.9e-49 199.9 199 59.3
Hund14216 Selenicereus undatus HOM05D005115 ORTHO05D005703 2.4e-49 199.5 202 59.4
Cc08_g16140 Coffea canephora HOM05D005115 ORTHO05D005703 7.0e-49 198.0 198 59.1
Duzib205G0660 Durio zibethinus HOM05D005115 ORTHO05D005703 7.0e-49 198.0 203 60.1
Rhsim02G0244500 Rhododendron simsii HOM05D005115 ORTHO05D005703 1.2e-48 197.2 203 61.1
Glyma.11G017800 Glycine max HOM05D005115 ORTHO05D005703 2.0e-48 196.4 203 58.6
arahy.Tifrunner.gnm1.ann1.V4I9JE Arachis hypogaea HOM05D005115 ORTHO05D005703 1.7e-47 193.4 203 60.6
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 5.0e-47 191.8 194 59.3
Glyma.01G225300 Glycine max HOM05D005115 ORTHO05D005703 6.6e-47 191.4 203 57.6
Gohir.A11G025300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 6.6e-47 191.4 203 59.6
Peaxi162Scf00102g01844 Petunia axillaris HOM05D005115 ORTHO05D005703 1.5e-46 190.3 198 57.6
Gorai.007G026700 Gossypium raimondii HOM05D005115 ORTHO05D005703 2.5e-46 189.5 203 58.6
Cfa011998 Carpinus fangiana HOM05D005115 ORTHO05D005703 4.3e-46 188.7 202 58.9
Gohir.D11G024900 Gossypium hirsutum HOM05D005115 ORTHO05D005703 4.3e-46 188.7 203 58.6
Nitab4.5_0002231g0060 Nicotiana tabacum HOM05D005115 ORTHO05D005703 4.3e-46 188.7 225 52.4
CiPaw.11G120600 Carya illinoinensis HOM05D005115 ORTHO05D005703 5.6e-46 188.3 200 57.5
Nitab4.5_0007367g0090 Nicotiana tabacum HOM05D005115 ORTHO05D005703 5.6e-46 188.3 225 52.4
Prupe.5G120800 Prunus persica HOM05D005115 ORTHO05D005703 1.6e-45 186.8 208 61.1
arahy.Tifrunner.gnm1.ann1.M14U5A Arachis hypogaea HOM05D005115 ORTHO05D005703 2.8e-45 186.0 202 58.4
EL10Ac5g12921 Beta vulgaris HOM05D005115 ORTHO05D005703 2.8e-45 186.0 255 49.4
Phvul.002G164100 Phaseolus vulgaris HOM05D005115 ORTHO05D005703 2.8e-45 186.0 205 57.1
TWI81G0084 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 6.2e-45 184.9 202 58.4
VMungo1215G1874 Vigna mungo HOM05D005115 ORTHO05D005703 1.2e-43 180.6 204 55.4
Cpa.g.sc79.29 Carica papaya HOM05D005115 ORTHO05D005703 4.4e-43 178.7 203 57.1
LjContig00312_ERROPOS870357g0004531 Lotus japonicus HOM05D005115 ORTHO05D005703 7.5e-43 177.9 203 57.1
vmacro11350 Vaccinium macrocarpon HOM05D005115 ORTHO05D005703 7.5e-43 177.9 241 50.2
TWI15G1136 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 2.9e-42 176.0 203 55.7
CiPaw.12G082200 Carya illinoinensis HOM05D005115 ORTHO05D005703 1.1e-41 174.1 201 56.2
Atru.chr9.1972 Acer truncatum HOM05D005115 ORTHO05D005703 1.4e-41 173.7 188 60.1
Atru.chr9.1986 Acer truncatum HOM05D005115 ORTHO05D005703 1.4e-41 173.7 188 60.1
Ca_17482_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 1.4e-41 173.7 209 52.2
Ca_17506_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 1.4e-41 173.7 209 52.2
Potri.003G140700 Populus trichocarpa HOM05D005115 ORTHO05D005703 1.4e-41 173.7 200 55.0
Oeu055028.2 Olea europaea HOM05D005115 ORTHO05D005703 1.9e-41 173.3 245 46.9
Hma1.2p1_0440F.1_g153350 Hydrangea macrophylla HOM05D005115 ORTHO05D005703 2.4e-41 172.9 175 60.6
PGR042G1877 Punica granatum HOM05D005115 ORTHO05D005703 2.4e-41 172.9 195 54.4
TPR.G3414 Trifolium pratense HOM05D005115 ORTHO05D005703 1.2e-40 170.6 206 53.9
FAN18G1353 Fragaria x ananassa HOM05D005115 ORTHO05D005703 1.6e-40 170.2 202 55.0
Potri.001G090900 Populus trichocarpa HOM05D005115 ORTHO05D005703 4.6e-40 168.7 200 54.0
FvH4_5g04680 Fragaria vesca HOM05D005115 ORTHO05D005703 6.0e-40 168.3 202 55.0
Sabra01G0067300 Salix brachista HOM05D005115 ORTHO05D005703 7.8e-40 167.9 201 53.7
Medtr8g099425 Medicago truncatula HOM05D005115 ORTHO05D005703 1.3e-39 167.2 209 52.6
CsaV3_4G006640 Cucumis sativus L. HOM05D005115 ORTHO05D005703 2.3e-39 166.4 180 58.3
ClCG07G011580 Citrullus lanatus HOM05D005115 ORTHO05D005703 3.9e-39 165.6 179 57.0
Actinidia22166 Actinidia chinensis HOM05D005115 ORTHO05D005703 6.6e-39 164.9 188 55.3
Sed0016945 Sechium edule HOM05D005115 ORTHO05D005703 1.1e-38 164.1 205 51.2
FAN13G0546 Fragaria x ananassa HOM05D005115 ORTHO05D005703 1.5e-38 163.7 203 55.7
FAN13G3196 Fragaria x ananassa HOM05D005115 ORTHO05D005703 1.5e-38 163.7 203 55.7
THA.LOC104815118 Tarenaya hassleriana HOM05D005115 ORTHO05D005703 1.5e-38 163.7 214 52.8
PGR031G1480 Punica granatum HOM05D005115 ORTHO05D005703 1.9e-38 163.3 179 55.9
AUR62019846 Chenopodium quinoa HOM05D005115 ORTHO05D005703 2.5e-38 162.9 137 65.0
Hund11387 Selenicereus undatus HOM05D005115 ORTHO05D005703 2.5e-38 162.9 307 41.4
Aqoxy7G00093 Aquilegia oxysepala HOM05D005115 ORTHO05D005703 3.3e-38 162.5 201 54.7
Manes.02G009400 Manihot esculenta HOM05D005115 ORTHO05D005703 7.3e-38 161.4 207 51.7
ECA240G1127 Erigeron canadensis HOM05D005115 ORTHO05D005703 1.6e-37 160.2 196 53.1
BcaC01g04648 Brassica carinata HOM05D005115 ORTHO05D005703 4.7e-37 158.7 206 50.5
SalBow6G1704 Salvia bowleyana HOM05D005115 ORTHO05D005703 4.7e-37 158.7 267 43.4
SalBow8G0540 Salvia bowleyana HOM05D005115 ORTHO05D005703 4.7e-37 158.7 267 43.4
C03p35310 Brassica napus HOM05D005115 ORTHO05D005703 2.3e-36 156.4 207 48.8
Eucgr.D01748 Eucalyptus grandis HOM05D005115 ORTHO05D005703 2.3e-36 156.4 172 57.6
Thhalv10028955m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 5.2e-36 155.2 210 48.6
CANSAT21G0870 Cannabis sativa HOM05D005115 ORTHO05D005703 6.8e-36 154.8 225 47.6
Haze_09072 Corylus avellana HOM05D005115 ORTHO05D005703 6.8e-36 154.8 300 41.0
Lsat_1_v5_gn_6_83921 Lactuca sativa HOM05D005115 ORTHO05D005703 1.5e-35 153.7 195 53.8
MBI06_g08472_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 2.0e-35 153.3 192 54.7
Carub.0006s2972 Capsella rubella HOM05D005115 ORTHO05D005703 5.8e-35 151.8 184 50.0
BcaB01g02726 Brassica carinata HOM05D005115 ORTHO05D005703 7.5e-35 151.4 203 49.3
HanXRQChr13g0415351 Helianthus annuus HOM05D005115 ORTHO05D005703 1.3e-34 150.6 161 59.6
COL.COLO4_10710 Corchorus olitorius HOM05D005115 ORTHO05D005703 2.9e-34 149.4 115 76.5
Sp6g06500 Schrenkiella parvula HOM05D005115 ORTHO05D005703 6.4e-34 148.3 211 47.4
ECA240G3401 Erigeron canadensis HOM05D000003 ORTHO05D000004 8.3e-34 147.9 196 52.0
PGSC0003DMG400005793 Solanum tuberosum HOM05D005115 ORTHO05D005703 8.3e-34 147.9 119 69.7
TAR636G3146 Trochodendron aralioides HOM05D005115 ORTHO05D005703 8.3e-34 147.9 123 65.9
HanXRQChr03g0083441 Helianthus annuus HOM05D005115 ORTHO05D005703 1.9e-33 146.7 189 51.3
PSO135G0387 Papaver somniferum HOM05D005115 ORTHO05D005703 1.9e-33 146.7 209 49.8
Sopen08g004230 Solanum pennellii HOM05D005115 ORTHO05D005703 1.9e-33 146.7 119 68.1
GSVIVG01019540001 Vitis vinifera HOM05D005115 ORTHO05D005703 2.4e-33 146.4 117 68.4
CAN.G792.37 Capsicum annuum HOM05D005115 ORTHO05D005703 4.1e-33 145.6 119 68.1
AT4G10970 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 5.4e-33 145.2 192 49.5
CDE04G3646 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 5.4e-33 145.2 200 48.0
CSS0002161 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 7.1e-33 144.8 119 68.9
CSS0007380 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 7.1e-33 144.8 119 68.9
PSO384G2123 Papaver somniferum HOM05D005115 ORTHO05D005703 1.6e-32 143.7 208 51.4
Migut.A00633 Erythranthe guttata HOM05D005115 ORTHO05D005703 1.3e-31 140.6 202 49.5
RcHm_v2.0_Chr7g0194701 Rosa chinensis HOM05D005115 ORTHO05D005703 2.3e-31 139.8 188 51.6
CARHR255630 Cardamine hirsuta HOM05D005115 ORTHO05D005703 3.0e-31 139.4 214 46.7
AL6G45070 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 1.5e-30 137.1 196 48.0
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 1.9e-30 136.7 193 47.2
MSTRG.25681 Avicennia marina HOM05D005115 ORTHO05D005703 5.6e-30 135.2 119 64.7
Psat7g026000 Pisum sativum HOM05D005115 ORTHO05D005703 1.2e-29 134.0 119 64.7
Sed0001802 Sechium edule HOM05D005115 ORTHO05D005703 4.7e-29 132.1 201 49.3
HPP92_002918 Vanilla planifolia HOM05D005115 ORTHO05D005703 6.2e-29 131.7 204 46.6
A03p29200 Brassica napus HOM05D005115 ORTHO05D005703 1.8e-28 130.2 227 43.6
unitig_0.g2839 Utricularia gibba HOM05D005115 ORTHO05D005703 4.0e-28 129.0 143 54.5
MBI07_g07104_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 9.9e-27 124.4 203 46.3
BolC3t15841H Brassica oleracea HOM05D005115 ORTHO05D005703 3.8e-26 122.5 120 57.5
MELO3C016298.2 Cucumis melo HOM05D005115 ORTHO05D005703 6.4e-26 121.7 228 43.4
Aa31LG9G11140 Aethionema arabicum HOM05D005115 ORTHO05D005703 3.2e-25 119.4 248 37.9
Sabra03G0101600 Salix brachista HOM05D000906 ORTHO05D000713 3.5e-24 115.9 291 35.4
CDE03G0211 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 4.6e-24 115.5 155 47.7
Zm00001eb178470 Zea mays HOM05D005115 ORTHO05D005703 1.3e-23 114.0 203 42.9
AT4G23910 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 3.9e-23 112.5 171 46.2
SEGI_32593 Sequoiadendron giganteum HOM05D005115 ORTHO05D005703 6.6e-23 111.7 184 49.5
Sp7g21880 Schrenkiella parvula HOM05D005115 ORTHO05D005703 1.2e-21 107.5 170 44.7
Thhalv10026287m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 6.2e-21 105.1 198 42.9
MD06G1108200 Malus domestica HOM05D005115 ORTHO05D005703 6.2e-21 105.1 98 62.2
AL7G29420 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 8.1e-21 104.8 171 45.0
Carub.0007s1718 Capsella rubella HOM05D005115 ORTHO05D005703 2.4e-20 103.2 166 47.0
Os08g0374200 Oryza sativa ssp. japonica HOM05D005115 ORTHO05D005703 4.0e-20 102.4 120 54.2
Gohir.D12G237999 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.2e-19 100.9 108 56.5
Gohir.D12G238133 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.2e-19 100.9 108 56.5
Gorai.008G254900 Gossypium raimondii HOM05D005115 ORTHO05D005703 1.2e-19 100.9 108 56.5
SHI06967 Sapria himalayana HOM05D005115 ORTHO05D005703 2.6e-19 99.8 108 55.6
Zm00001eb042700 Zea mays HOM05D005115 ORTHO05D005703 2.6e-19 99.8 121 53.7
Lalb_Chr05g0211561 Lupinus albus HOM05D005115 ORTHO05D005703 9.9e-19 97.8 104 56.7
ATR0602G161 Amborella trichopoda HOM05D005115 ORTHO05D005703 1.9e-17 93.6 262 35.1
BcaNung01098 Brassica carinata HOM05D005115 ORTHO05D005703 5.4e-17 92.0 184 40.2
CARHR231320 Cardamine hirsuta HOM05D005115 ORTHO05D005703 9.3e-17 91.3 122 48.4
A01p15220 Brassica napus HOM05D005115 ORTHO05D005703 2.7e-16 89.7 199 39.7
DCAR_029907 Daucus carota HOM05D005115 ORTHO05D005703 5.6e-14 82.0 73 69.9
C01p19150 Brassica napus HOM05D005115 ORTHO05D005703 2.1e-13 80.1 121 45.5
BolC1t01841H Brassica oleracea HOM05D005115 ORTHO05D005703 3.6e-13 79.3 121 45.5
BcaC09g50931 Brassica carinata HOM05D005115 ORTHO05D005703 4.8e-13 79.0 121 45.5
arahy.Tifrunner.gnm1.ann1.ULQ1VN Arachis hypogaea HOM05D005115 ORTHO05D005703 2.4e-12 76.6 70 62.9
BraA01t01460Z Brassica rapa HOM05D005115 ORTHO05D005703 2.6e-11 73.2 118 41.5
Lsat_1_v5_gn_1_118201 Lactuca sativa HOM05D009751 ORTHO05D005703 3.5e-08 62.8 55 60.0
Lsat_1_v5_gn_8_68541 Lactuca sativa HOM05D005115 ORTHO05D018183 1.0e-07 61.2 55 58.2
Gohir.A12G236850 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.8e-07 60.5 108 44.4
AagrBONN_evm.TU.Sc2ySwM_344.5012 Anthoceros agrestis HOM05D028980 ORTHO05D026613 5.1e-07 58.9 93 47.3
Lj4g0005021 Lotus japonicus HOM05D005115 ORTHO05D005703 5.1e-07 58.9 170 32.9
Oeu029936.1 Olea europaea HOM05D005115 ORTHO05D005703 1.1e-06 57.8 59 52.5
BcaB01g01572 Brassica carinata HOM05D005115 ORTHO05D005703 3.3e-06 56.2 62 48.4
FAN04G1053 Fragaria x ananassa HOM05D005115 ORTHO05D005703 3.3e-06 56.2 42 64.3


User provided reference genes

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