Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc22g0004640 Simmondsia chinensis HOM05D002740 ORTHO05D003126 1.7e-66 255.8 121 100.0
TAR365G0402 Trochodendron aralioides HOM05D002740 ORTHO05D003126 6.8e-15 84.3 80 52.5
TAR365G1151 Trochodendron aralioides HOM05D002740 ORTHO05D003126 6.8e-15 84.3 80 52.5
AT5G32470 Arabidopsis thaliana HOM05D002740 ORTHO05D003126 8.9e-15 84.0 63 58.7
MD12G1250300 Malus domestica HOM05D002740 ORTHO05D003126 1.2e-14 83.6 62 56.5
CARHR217090 Cardamine hirsuta HOM05D002740 ORTHO05D003126 1.5e-14 83.2 63 58.7
Lsat_1_v5_gn_2_16740 Lactuca sativa HOM05D002740 ORTHO05D003126 1.5e-14 83.2 80 51.2
Potri.013G049300 Populus trichocarpa HOM05D002740 ORTHO05D003126 1.5e-14 83.2 63 57.1
Sabra13G0045500 Salix brachista HOM05D002740 ORTHO05D003126 1.5e-14 83.2 63 57.1
COL.COLO4_15534 Corchorus olitorius HOM05D002740 ORTHO05D003126 2.0e-14 82.8 64 56.2
Duzib128G1958 Durio zibethinus HOM05D002740 ORTHO05D003126 2.6e-14 82.4 63 57.1
TAR636G2335 Trochodendron aralioides HOM05D002740 ORTHO05D003126 2.6e-14 82.4 80 48.8
AL7G43640 Arabidopsis lyrata HOM05D002740 ORTHO05D003126 3.4e-14 82.0 63 57.1
ECA238G0995 Erigeron canadensis HOM05D002740 ORTHO05D003126 3.4e-14 82.0 80 50.0
BcaB04g18093 Brassica carinata HOM05D002740 ORTHO05D003126 4.4e-14 81.6 62 58.1
Thhalv10002337m.g Eutrema salsugineum HOM05D002740 ORTHO05D003126 5.8e-14 81.3 62 58.1
FvH4_6g01520 Fragaria vesca HOM05D002740 ORTHO05D003126 5.8e-14 81.3 80 50.0
FAN05G0538 Fragaria x ananassa HOM05D002740 ORTHO05D003126 5.8e-14 81.3 80 50.0
FAN05G2066 Fragaria x ananassa HOM05D002740 ORTHO05D003126 5.8e-14 81.3 80 50.0
FAN09G1477 Fragaria x ananassa HOM05D002740 ORTHO05D003126 5.8e-14 81.3 80 50.0
FAN14G2846 Fragaria x ananassa HOM05D002740 ORTHO05D003126 5.8e-14 81.3 80 50.0
FAN14G4679 Fragaria x ananassa HOM05D002740 ORTHO05D003126 5.8e-14 81.3 80 50.0
Gohir.D11G254700 Gossypium hirsutum HOM05D002740 ORTHO05D003126 7.5e-14 80.9 80 48.8
Gorai.007G273300 Gossypium raimondii HOM05D002740 ORTHO05D003126 7.5e-14 80.9 80 48.8
QL03p029148 Quercus lobata HOM05D002740 ORTHO05D003126 7.5e-14 80.9 63 55.6
TAR362G1135 Trochodendron aralioides HOM05D002740 ORTHO05D003126 7.5e-14 80.9 80 47.5
Aa31LG2G2010 Aethionema arabicum HOM05D002740 ORTHO05D003126 9.8e-14 80.5 63 57.1
BcaC07g37707 Brassica carinata HOM05D002740 ORTHO05D003126 9.8e-14 80.5 62 56.5
BolC8t48073H Brassica oleracea HOM05D002740 ORTHO05D003126 9.8e-14 80.5 62 56.5
Dinv07505 Davidia involucrata HOM05D002740 ORTHO05D003126 9.8e-14 80.5 63 57.1
Lsat_1_v5_gn_8_2520 Lactuca sativa HOM05D002740 ORTHO05D003126 9.8e-14 80.5 62 58.1
MD04G1232700 Malus domestica HOM05D002740 ORTHO05D003126 9.8e-14 80.5 62 56.5
Nn3g19799 Nelumbo nucifera HOM05D002740 ORTHO05D003126 9.8e-14 80.5 63 55.6
Nitab4.5_0000841g0010 Nicotiana tabacum HOM05D002740 ORTHO05D003126 9.8e-14 80.5 80 51.2
A08p10090 Brassica napus HOM05D002740 ORTHO05D003126 1.3e-13 80.1 62 56.5
BraA08t33006Z Brassica rapa HOM05D002740 ORTHO05D003126 1.3e-13 80.1 62 56.5
Carub.0007s3054 Capsella rubella HOM05D002740 ORTHO05D003126 1.3e-13 80.1 63 55.6
Peaxi162Scf00077g00094 Petunia axillaris HOM05D002740 ORTHO05D003126 1.3e-13 80.1 80 50.0
RcHm_v2.0_Chr3g0449211 Rosa chinensis HOM05D002740 ORTHO05D003126 1.3e-13 80.1 80 48.8
Potri.019G022700 Populus trichocarpa HOM05D002740 ORTHO05D003126 1.7e-13 79.7 63 54.0
Prupe.6G352500 Prunus persica HOM05D002740 ORTHO05D003126 1.7e-13 79.7 79 49.4
Gohir.A11G244600 Gossypium hirsutum HOM05D002740 ORTHO05D003126 2.2e-13 79.3 80 48.8
TWI32G1314 Tripterygium wilfordii HOM05D002740 ORTHO05D003126 2.2e-13 79.3 63 54.0
CAN.G94.6 Capsicum annuum HOM05D002740 ORTHO05D003126 2.9e-13 79.0 63 57.1
Duzib177G0935 Durio zibethinus HOM05D002740 ORTHO05D003126 2.9e-13 79.0 80 46.2
Nitab4.5_0000476g0220 Nicotiana tabacum HOM05D002740 ORTHO05D003126 2.9e-13 79.0 63 58.7
Nitab4.5_0002088g0010 Nicotiana tabacum HOM05D002740 ORTHO05D003126 2.9e-13 79.0 62 58.1
ATR0787G107 Amborella trichopoda HOM05D002740 ORTHO05D003126 3.7e-13 78.6 63 60.3
Aqoxy5G00131 Aquilegia oxysepala HOM05D002740 ORTHO05D003126 3.7e-13 78.6 63 55.6
Lalb_Chr02g0148991 Lupinus albus HOM05D002740 ORTHO05D003126 3.7e-13 78.6 64 53.1
Manes.08G140900 Manihot esculenta HOM05D002740 ORTHO05D003126 3.7e-13 78.6 63 55.6
Nn1g02994 Nelumbo nucifera HOM05D002740 ORTHO05D003126 3.7e-13 78.6 63 55.6
Actinidia06833 Actinidia chinensis HOM05D002740 ORTHO05D003126 4.9e-13 78.2 65 52.3
Lj5g0022875 Lotus japonicus HOM05D002740 ORTHO05D003126 4.9e-13 78.2 62 56.5
TAR633G0934 Trochodendron aralioides HOM05D002740 ORTHO05D003126 4.9e-13 78.2 79 49.4
arahy.Tifrunner.gnm1.ann1.33UQPP Arachis hypogaea HOM05D002740 ORTHO05D003126 6.4e-13 77.8 62 56.5
arahy.Tifrunner.gnm1.ann1.JB472D Arachis hypogaea HOM05D002740 ORTHO05D003126 6.4e-13 77.8 62 56.5
CAN.G694.8 Capsicum annuum HOM05D002740 ORTHO05D003126 6.4e-13 77.8 62 59.7
Cpa.g.sc51.3 Carica papaya HOM05D002740 ORTHO05D003126 6.4e-13 77.8 63 55.6
QL09p041531 Quercus lobata HOM05D002740 ORTHO05D003126 6.4e-13 77.8 63 55.6
Duzib106G0100 Durio zibethinus HOM05D002740 ORTHO05D003126 8.3e-13 77.4 80 48.8
CSS0008679 Camellia sinensis var. sinensis HOM05D002740 ORTHO05D003126 1.1e-12 77.0 63 54.0
MBI16_g02733_MAGBIO Magnolia biondii HOM05D002740 ORTHO05D003126 1.1e-12 77.0 81 49.4
Solyc04g050190.4 Solanum lycopersicum HOM05D002740 ORTHO05D003126 1.1e-12 77.0 63 55.6
Sopen04g020910 Solanum pennellii HOM05D002740 ORTHO05D003126 1.1e-12 77.0 63 55.6
Ca_10029_v3 Cicer arietinum L. HOM05D002740 ORTHO05D003126 1.4e-12 76.6 62 53.2
HanXRQChr11g0327251 Helianthus annuus HOM05D002740 ORTHO05D003126 1.4e-12 76.6 80 47.5
Sp7g07700 Schrenkiella parvula HOM05D002740 ORTHO05D003126 1.4e-12 76.6 62 53.2
TWI60G0984 Tripterygium wilfordii HOM05D002740 ORTHO05D003126 1.4e-12 76.6 63 55.6
Aa31LG9G18030 Aethionema arabicum HOM05D002740 ORTHO05D003126 1.9e-12 76.3 80 45.0
Glyma.20G226700 Glycine max HOM05D002740 ORTHO05D003126 1.9e-12 76.3 62 54.8
Manes.08G141500 Manihot esculenta HOM05D002740 ORTHO05D003126 1.9e-12 76.3 63 54.0
Medtr1g080470 Medicago truncatula HOM05D002740 ORTHO05D003126 1.9e-12 76.3 62 51.6
Nitab4.5_0010891g0030 Nicotiana tabacum HOM05D002740 ORTHO05D003126 1.9e-12 76.3 63 57.1
THA.LOC104823789 Tarenaya hassleriana HOM05D002740 ORTHO05D003126 1.9e-12 76.3 63 52.4
TPR.G26625 Trifolium pratense HOM05D002740 ORTHO05D003126 1.9e-12 76.3 62 53.2
GSVIVG01001480001 Vitis vinifera HOM05D002740 ORTHO05D003126 1.9e-12 76.3 63 54.0
Migut.F02056 Erythranthe guttata HOM05D002740 ORTHO05D003126 2.4e-12 75.9 63 54.0
Gohir.D08G234800 Gossypium hirsutum HOM05D002740 ORTHO05D003126 2.4e-12 75.9 63 52.4
Oeu014442.1 Olea europaea HOM05D002740 ORTHO05D003126 2.4e-12 75.9 63 52.4
Actinidia39980 Actinidia chinensis HOM05D002740 ORTHO05D003126 3.2e-12 75.5 63 54.0
CANSAT54G3003 Cannabis sativa HOM05D002740 ORTHO05D003126 3.2e-12 75.5 62 50.0
Lj2A46T69 Lonicera japonica HOM05D002740 ORTHO05D003126 3.2e-12 75.5 63 55.6
CiPaw.07G070800 Carya illinoinensis HOM05D002740 ORTHO05D003126 4.1e-12 75.1 80 50.0
Peaxi162Scf00156g00620 Petunia axillaris HOM05D002740 ORTHO05D003126 4.1e-12 75.1 63 54.0
Sc22g0004590 Simmondsia chinensis HOM05D002740 ORTHO05D003126 4.1e-12 75.1 89 41.6
vmacro19980 Vaccinium macrocarpon HOM05D002740 ORTHO05D003126 4.1e-12 75.1 63 57.1
MSTRG.8171 Avicennia marina HOM05D002740 ORTHO05D003126 5.4e-12 74.7 63 55.6
Cc09_g02980 Coffea canephora HOM05D002740 ORTHO05D003126 5.4e-12 74.7 63 52.4
Gohir.A08G217800 Gossypium hirsutum HOM05D002740 ORTHO05D003126 5.4e-12 74.7 64 50.0
HanXRQChr14g0431491 Helianthus annuus HOM05D002740 ORTHO05D003126 5.4e-12 74.7 63 54.0
Prupe.8G215100 Prunus persica HOM05D002740 ORTHO05D003126 5.4e-12 74.7 63 52.4
Os08g0566000 Oryza sativa ssp. japonica HOM05D002740 ORTHO05D003126 7.1e-12 74.3 63 52.4
Phvul.008G137801 Phaseolus vulgaris HOM05D002740 ORTHO05D003126 7.1e-12 74.3 62 53.2
Gorai.004G249600 Gossypium raimondii HOM05D002740 ORTHO05D003126 9.2e-12 73.9 62 51.6
Psat6g144200 Pisum sativum HOM05D002740 ORTHO05D003126 9.2e-12 73.9 62 50.0
Ciclev10030905m.g Citrus clementina HOM05D002740 ORTHO05D003126 1.2e-11 73.6 80 42.5
Hma1.2p1_0130F.1_g060480 Hydrangea macrophylla HOM05D002740 ORTHO05D003126 1.2e-11 73.6 63 52.4
Manes.09G146900 Manihot esculenta HOM05D002740 ORTHO05D003126 1.2e-11 73.6 63 50.8
Oeu010185.1 Olea europaea HOM05D002740 ORTHO05D003126 1.2e-11 73.6 87 41.4
PGR004G1282 Punica granatum HOM05D002740 ORTHO05D003126 1.2e-11 73.6 63 50.8
Thecc.05G266800 Theobroma cacao HOM05D002740 ORTHO05D003126 1.2e-11 73.6 63 52.4
Lj1A74G101 Lonicera japonica HOM05D002740 ORTHO05D003126 1.6e-11 73.2 63 50.8
Actinidia04680 Actinidia chinensis HOM05D002740 ORTHO05D003126 2.1e-11 72.8 62 53.2
Actinidia37553 Actinidia chinensis HOM05D002740 ORTHO05D003126 2.1e-11 72.8 62 53.2
Glyma.10G164300 Glycine max HOM05D002740 ORTHO05D003126 2.1e-11 72.8 62 51.6
Hund07176 Selenicereus undatus HOM05D002740 ORTHO05D003126 2.1e-11 72.8 63 49.2
Eucgr.H04213 Eucalyptus grandis HOM05D002740 ORTHO05D003126 2.7e-11 72.4 63 50.8
RcHm_v2.0_Chr6g0286581 Rosa chinensis HOM05D002740 ORTHO05D003126 2.7e-11 72.4 63 52.4
VMungo0720G1032 Vigna mungo HOM05D002740 ORTHO05D003126 2.7e-11 72.4 62 51.6
Ah.06g187970 Amaranthus hybridus HOM05D002740 ORTHO05D003126 4.6e-11 71.6 63 49.2
EL10Ac4g09762 Beta vulgaris HOM05D002740 ORTHO05D003126 4.6e-11 71.6 80 41.2
CDE02G0381 Ceratophyllum demersum HOM05D002740 ORTHO05D003126 4.6e-11 71.6 63 52.4
AUR62006985 Chenopodium quinoa HOM05D002740 ORTHO05D003126 4.6e-11 71.6 80 43.8
HanXRQChr12g0384431 Helianthus annuus HOM05D002740 ORTHO05D003126 4.6e-11 71.6 63 52.4
HanXRQChr14g0443151 Helianthus annuus HOM05D002740 ORTHO05D003126 4.6e-11 71.6 62 46.8
HanXRQChr15g0471721 Helianthus annuus HOM05D002740 ORTHO05D003126 4.6e-11 71.6 63 52.4
SalBow1G0650 Salvia bowleyana HOM05D002740 ORTHO05D003126 4.6e-11 71.6 63 50.8
SalBow1G8628 Salvia bowleyana HOM05D002740 ORTHO05D003126 4.6e-11 71.6 63 50.8
GSVIVG01028433001 Vitis vinifera HOM05D002740 ORTHO05D003126 4.6e-11 71.6 63 52.4
Atru.chr2.1110 Acer truncatum HOM05D002740 ORTHO05D003126 6.0e-11 71.2 63 47.6
AUR62000632 Chenopodium quinoa HOM05D002740 ORTHO05D003126 6.0e-11 71.2 80 42.5
Migut.N02233 Erythranthe guttata HOM05D002740 ORTHO05D003126 6.0e-11 71.2 63 49.2
SGA_v2.0_scaffold329G48830 Striga asiatica HOM05D002740 ORTHO05D003126 6.0e-11 71.2 63 50.8
PSO764G0261 Papaver somniferum HOM05D002740 ORTHO05D003126 7.8e-11 70.9 63 46.0
PSO832G0576 Papaver somniferum HOM05D002740 ORTHO05D003126 7.8e-11 70.9 63 46.0
Manes.13G039600 Manihot esculenta HOM05D002740 ORTHO05D003126 1.0e-10 70.5 63 46.0
TWI75G0335 Tripterygium wilfordii HOM05D002740 ORTHO05D003126 1.0e-10 70.5 63 50.8
MD05G1188600 Malus domestica HOM05D002740 ORTHO05D003126 1.3e-10 70.1 63 54.0
SGA_v2.0_scaffold62G21468 Striga asiatica HOM05D002740 ORTHO05D003126 1.3e-10 70.1 63 50.8
vmacro02711 Vaccinium macrocarpon HOM05D002740 ORTHO05D003126 1.3e-10 70.1 60 53.3
Nitab4.5_0002435g0030 Nicotiana tabacum HOM05D002740 ORTHO05D003126 1.7e-10 69.7 63 49.2
FvH4_2g20480 Fragaria vesca HOM05D002740 ORTHO05D003126 2.3e-10 69.3 63 49.2
FAN15G0236 Fragaria x ananassa HOM05D002740 ORTHO05D003126 2.3e-10 69.3 63 49.2
FAN24G0357 Fragaria x ananassa HOM05D002740 ORTHO05D003126 2.3e-10 69.3 63 49.2
FAN27G2178 Fragaria x ananassa HOM05D002740 ORTHO05D003126 2.3e-10 69.3 63 49.2
Zm00001eb038600 Zea mays HOM05D002740 ORTHO05D003126 2.3e-10 69.3 63 50.8
Nitab4.5_0000845g0210 Nicotiana tabacum HOM05D002740 ORTHO05D003126 3.0e-10 68.9 62 50.0
Zm00001eb175630 Zea mays HOM05D002740 ORTHO05D003126 3.0e-10 68.9 63 49.2
Duzib133G0998 Durio zibethinus HOM05D002740 ORTHO05D003126 3.9e-10 68.6 63 47.6
Gohir.A07G152600 Gossypium hirsutum HOM05D002740 ORTHO05D003126 3.9e-10 68.6 63 49.2
Solyc05g055900.3 Solanum lycopersicum HOM05D002740 ORTHO05D003126 3.9e-10 68.6 61 50.8
Sopen05g034300 Solanum pennellii HOM05D002740 ORTHO05D003126 3.9e-10 68.6 61 50.8
CiPaw.04G190900 Carya illinoinensis HOM05D002740 ORTHO05D003126 5.1e-10 68.2 63 47.6
Ciclev10023610m.g Citrus clementina HOM05D002740 ORTHO05D003126 5.1e-10 68.2 63 46.0
Gohir.D07G158800 Gossypium hirsutum HOM05D002740 ORTHO05D003126 5.1e-10 68.2 62 50.0
Gorai.001G182000 Gossypium raimondii HOM05D002740 ORTHO05D003126 5.1e-10 68.2 62 50.0
CDE02G1172 Ceratophyllum demersum HOM05D002740 ORTHO05D003126 6.6e-10 67.8 62 54.8
Haze_24709 Corylus avellana HOM05D002740 ORTHO05D003126 6.6e-10 67.8 63 44.4
Duzib138G0150 Durio zibethinus HOM05D002740 ORTHO05D003126 6.6e-10 67.8 63 46.0
HanXRQChr14g0442421 Helianthus annuus HOM05D002740 ORTHO05D003126 6.6e-10 67.8 63 50.8
Ah.02g118370 Amaranthus hybridus HOM05D002740 ORTHO05D003126 8.6e-10 67.4 63 49.2
Dinv19266 Davidia involucrata HOM05D002740 ORTHO05D003126 8.6e-10 67.4 60 51.7
CDE08G1574 Ceratophyllum demersum HOM05D002740 ORTHO05D003126 1.1e-09 67.0 62 53.2
SalBow6G3005 Salvia bowleyana HOM05D002740 ORTHO05D003126 1.1e-09 67.0 64 48.4
MSTRG.12516 Avicennia marina HOM05D002740 ORTHO05D003126 1.5e-09 66.6 64 43.8
Thecc.01G249900 Theobroma cacao HOM05D002740 ORTHO05D003126 1.5e-09 66.6 62 46.8
ClCG03G011470 Citrullus lanatus HOM05D002740 ORTHO05D003126 1.9e-09 66.2 63 44.4
MELO3C010087.2 Cucumis melo HOM05D002740 ORTHO05D003126 1.9e-09 66.2 63 44.4
CsaV3_1G045030 Cucumis sativus L. HOM05D002740 ORTHO05D003126 1.9e-09 66.2 63 44.4
ECA233G3395 Erigeron canadensis HOM05D002740 ORTHO05D003126 1.9e-09 66.2 63 46.0
Peaxi162Scf00043g00272 Petunia axillaris HOM05D002740 ORTHO05D003126 1.9e-09 66.2 63 46.0
Cpa.g.sc87.31 Carica papaya HOM05D002740 ORTHO05D003126 2.5e-09 65.9 63 44.4
HPP92_025821 Vanilla planifolia HOM05D002740 ORTHO05D003126 3.3e-09 65.5 63 47.6
DCAR_005516 Daucus carota HOM05D002740 ORTHO05D003126 5.6e-09 64.7 62 46.8
Lj8A197T38 Lonicera japonica HOM05D002740 ORTHO05D003126 5.6e-09 64.7 80 41.2
MD13G1252100 Malus domestica HOM05D002740 ORTHO05D003126 5.6e-09 64.7 52 51.9
Cfa002487 Carpinus fangiana HOM05D002740 ORTHO05D003126 7.3e-09 64.3 63 41.3
Sopen09g025670 Solanum pennellii HOM05D002740 ORTHO05D003126 7.3e-09 64.3 97 35.1
unitig_88.g27819 Utricularia gibba HOM05D002740 ORTHO05D003126 7.3e-09 64.3 63 44.4
Solyc09g064510.3 Solanum lycopersicum HOM05D002740 ORTHO05D003126 9.5e-09 63.9 97 35.1
Oeu052082.1 Olea europaea HOM05D002740 ORTHO05D003126 1.2e-08 63.5 63 44.4
CiPaw.03G271200 Carya illinoinensis HOM05D002740 ORTHO05D003126 1.6e-08 63.2 63 47.6
Lsat_1_v5_gn_9_11541 Lactuca sativa HOM05D002740 ORTHO05D003126 1.6e-08 63.2 61 45.9
PGSC0003DMG400008580 Solanum tuberosum HOM05D002740 ORTHO05D003126 2.8e-08 62.4 63 42.9
CAN.G536.13 Capsicum annuum HOM05D002740 ORTHO05D003126 8.1e-08 60.8 63 39.7
CSS0008677 Camellia sinensis var. sinensis HOM05D002740 ORTHO05D003126 1.1e-07 60.5 62 46.8
Sed0005304 Sechium edule HOM05D002740 ORTHO05D003126 4.0e-07 58.5 63 39.7
SGA_v2.0_scaffold42G16173 Striga asiatica HOM05D002740 ORTHO05D003126 4.0e-07 58.5 62 38.7
HanXRQChr10g0280201 Helianthus annuus HOM05D002740 ORTHO05D003126 9.9e-06 53.9 65 40.0
Sc16g0009790 Simmondsia chinensis HOM05D002740 ORTHO05D003126 9.9e-06 53.9 58 39.7
HPP92_022080 Vanilla planifolia HOM05D002740 ORTHO05D003126 9.9e-06 53.9 63 36.5


User provided reference genes

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