Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc22g0004610 Simmondsia chinensis HOM05D000963 ORTHO05D011117 9.5e-65 250.0 123 100.0
Sc03g0007080 Simmondsia chinensis HOM05D000963 ORTHO05D005131 1.1e-31 140.2 114 66.7
SalBow6G4874 Salvia bowleyana HOM05D000963 ORTHO05D005131 9.0e-31 137.1 116 65.5
Lsat_1_v5_gn_4_145420 Lactuca sativa HOM05D000963 ORTHO05D005131 2.0e-30 136.0 104 69.2
EL10As6g23662 Beta vulgaris HOM05D001325 ORTHO05D001540 2.7e-27 125.6 138 55.1
Ca_03776_v3 Cicer arietinum L. HOM05D000963 ORTHO05D005131 7.4e-25 117.5 154 52.6
Ca_03777_v3 Cicer arietinum L. HOM05D000963 ORTHO05D005131 7.4e-25 117.5 154 52.6
LjContig00319g0011411 Lotus japonicus HOM05D000963 ORTHO05D005131 6.9e-23 110.9 108 58.3
Oeu012784.1 Olea europaea HOM05D000963 ORTHO05D005131 1.2e-22 110.2 121 53.7
VMungo0464G1437 Vigna mungo HOM05D000963 ORTHO05D005131 3.4e-22 108.6 100 62.0
Sc05g0004060 Simmondsia chinensis HOM05D000963 ORTHO05D005131 2.2e-21 105.9 121 56.2
Nitab4.5_0004841g0030 Nicotiana tabacum HOM05D000963 ORTHO05D005131 2.1e-19 99.4 100 56.0
SGA_v2.0_scaffold126G33874 Striga asiatica HOM05D000963 ORTHO05D005131 2.7e-19 99.0 93 60.2
unitig_91.g26528 Utricularia gibba HOM05D000963 ORTHO05D005131 1.8e-18 96.3 121 50.4
Sc05g0004130 Simmondsia chinensis HOM05D000963 ORTHO05D005131 2.3e-18 95.9 136 50.0
Glyma.05G084600 Glycine max HOM05D000963 ORTHO05D005131 1.5e-17 93.2 108 50.0
Aqoxy4G01626 Aquilegia oxysepala HOM05D003517 ORTHO05D005131 1.8e-15 86.3 114 47.4
DCAR_001146 Daucus carota HOM05D000963 ORTHO05D005131 2.9e-13 79.0 92 48.9
DCAR_032037 Daucus carota HOM05D000963 ORTHO05D005131 2.9e-13 79.0 92 48.9
Gohir.D02G117532 Gossypium hirsutum HOM05D000963 ORTHO05D005131 2.9e-13 79.0 92 48.9
Gohir.D03G074448 Gossypium hirsutum HOM05D000963 ORTHO05D005131 2.9e-13 79.0 92 48.9
DCAR_018748 Daucus carota HOM05D003334 ORTHO05D004076 5.0e-13 78.2 94 48.9
DCAR_001525 Daucus carota HOM05D000963 ORTHO05D005131 1.4e-12 76.6 75 60.0
Gohir.A12G092444 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.4e-12 76.6 92 47.8
SGA_v2.0_scaffold893G53701 Striga asiatica HOM05D000963 ORTHO05D005131 1.4e-12 76.6 42 83.3
TAR365G0238 Trochodendron aralioides HOM05D001325 ORTHO05D001540 1.4e-12 76.6 42 83.3
TAR633G0621 Trochodendron aralioides HOM05D000963 ORTHO05D005131 1.4e-12 76.6 42 83.3
unitig_87.g28036 Utricularia gibba HOM05D000963 ORTHO05D005131 1.4e-12 76.6 42 83.3
unitig_91.g26518 Utricularia gibba HOM05D001325 ORTHO05D001540 1.4e-12 76.6 42 83.3
vmacro22396 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 1.4e-12 76.6 42 83.3
vmacro22416 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 1.4e-12 76.6 42 83.3
vmacro22421 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 1.4e-12 76.6 42 83.3
Gohir.A09G101420 Gossypium hirsutum HOM05D000963 ORTHO05D005131 2.5e-12 75.9 92 47.8
PGSC0003DMG400036067 Solanum tuberosum HOM05D000963 ORTHO05D001540 7.2e-12 74.3 222 31.1
SHI36398 Sapria himalayana HOM05D000963 ORTHO05D005131 9.4e-12 73.9 91 49.5
Hund25913 Selenicereus undatus HOM05D000963 ORTHO05D005131 9.4e-12 73.9 42 78.6
Solyc01g017050.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 1.2e-11 73.6 42 81.0
RhsimPtG0005500 Rhododendron simsii HOM05D000963 ORTHO05D005131 2.7e-11 72.4 42 78.6
Dinv44812 Davidia involucrata HOM05D000086 ORTHO05D000431 4.7e-11 71.6 50 66.0
Sc25g0002000 Simmondsia chinensis HOM05D000963 ORTHO05D005131 6.1e-11 71.2 121 39.7
Cpa.g.sc389.2 Carica papaya HOM05D000963 ORTHO05D005131 7.9e-11 70.9 58 60.3
arahy.Tifrunner.gnm1.ann1.G70FPN Arachis hypogaea HOM05D000963 ORTHO05D005131 1.4e-10 70.1 53 64.2
Gohir.D04G090233 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.4e-10 70.1 42 76.2
BcaC04g20703 Brassica carinata HOM05D000963 ORTHO05D011117 1.8e-10 69.7 42 81.0
BcaC04g20780 Brassica carinata HOM05D000963 ORTHO05D011117 1.8e-10 69.7 42 81.0
BcaNung07084 Brassica carinata HOM05D000963 ORTHO05D011117 1.8e-10 69.7 42 81.0
C04p22530 Brassica napus HOM05D000963 ORTHO05D011117 1.8e-10 69.7 42 81.0
C09p24690 Brassica napus HOM05D000963 ORTHO05D011117 1.8e-10 69.7 42 81.0
C09p39370 Brassica napus HOM05D000963 ORTHO05D011117 1.8e-10 69.7 42 81.0
BolSC47t61068H Brassica oleracea HOM05D000963 ORTHO05D011117 1.8e-10 69.7 42 81.0
Gohir.A02G134101 Gossypium hirsutum HOM05D000963 ORTHO05D004715 1.8e-10 69.7 42 81.0
Gohir.D03G074976 Gossypium hirsutum HOM05D000963 ORTHO05D004715 1.8e-10 69.7 42 81.0
Sc14g0005060 Simmondsia chinensis HOM05D000963 ORTHO05D005131 1.8e-10 69.7 50 68.0
Sopen06g015040 Solanum pennellii HOM05D000963 ORTHO05D011117 1.8e-10 69.7 42 81.0
PGSC0003DMG400039021 Solanum tuberosum HOM05D000963 ORTHO05D010201 1.8e-10 69.7 52 69.2
TAR633G1337 Trochodendron aralioides HOM05D001070 ORTHO05D002096 1.8e-10 69.7 42 81.0
arahy.Tifrunner.gnm1.ann1.URY1CV Arachis hypogaea HOM05D000533 ORTHO05D011117 2.3e-10 69.3 42 81.0
Cpa.g.sc2719.1 Carica papaya HOM05D000963 ORTHO05D011117 2.3e-10 69.3 42 81.0
MELO3C033790.2 Cucumis melo HOM05D000963 ORTHO05D011117 2.3e-10 69.3 42 81.0
PGSC0003DMG400020295 Solanum tuberosum HOM05D000963 ORTHO05D005131 2.3e-10 69.3 38 81.6
vmacro09302 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 3.9e-10 68.6 42 76.2
MELO3C027127.2 Cucumis melo HOM05D000963 ORTHO05D011117 5.1e-10 68.2 42 81.0
Dinv39831 Davidia involucrata HOM05D000963 ORTHO05D004715 6.7e-10 67.8 33 90.9
ECA074G0007 Erigeron canadensis HOM05D000963 ORTHO05D004715 6.7e-10 67.8 33 90.9
ECA074G0008 Erigeron canadensis HOM05D000963 ORTHO05D004715 6.7e-10 67.8 33 90.9
ECA169G0003 Erigeron canadensis HOM05D000963 ORTHO05D005131 6.7e-10 67.8 33 90.9
Sopen02g009100 Solanum pennellii HOM05D000963 ORTHO05D005131 6.7e-10 67.8 91 49.5
PGSC0003DMG400018892 Solanum tuberosum HOM05D000963 ORTHO05D005131 6.7e-10 67.8 33 90.9
unitig_8.g4106 Utricularia gibba HOM05D000963 ORTHO05D005131 6.7e-10 67.8 33 90.9
unitig_87.g27920 Utricularia gibba HOM05D000963 ORTHO05D001540 6.7e-10 67.8 33 90.9
unitig_8.g4107 Utricularia gibba HOM05D000963 ORTHO05D011117 8.8e-10 67.4 42 78.6
vmacro09305 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 1.5e-09 66.6 69 59.4
PGSC0003DMG400046976 Solanum tuberosum HOM05D000963 ORTHO05D005131 2.0e-09 66.2 60 56.7
EL10Ac7g17438 Beta vulgaris HOM05D000963 ORTHO05D005131 2.6e-09 65.9 36 83.3
Gohir.D10G125850 Gossypium hirsutum HOM05D000963 ORTHO05D005131 2.6e-09 65.9 73 47.9
Gorai.012G100900 Gossypium raimondii HOM05D000963 ORTHO05D005131 3.3e-09 65.5 38 78.9
Hma1.2p1_0016F.1_g010990 Hydrangea macrophylla HOM05D000963 ORTHO05D011117 5.7e-09 64.7 44 75.0
CAN.G1185.10 Capsicum annuum HOM05D000963 ORTHO05D004715 7.4e-09 64.3 42 71.4
MBI16_g46635_MAGBIO Magnolia biondii HOM05D000963 ORTHO05D005131 9.7e-09 63.9 39 71.8
Gohir.A01G056250 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.3e-08 63.5 38 71.1
Gohir.D09G105350 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.3e-08 63.5 37 75.7
Sopen11g020190 Solanum pennellii HOM05D000963 ORTHO05D005131 1.3e-08 63.5 81 46.9
EL10As10g23961 Beta vulgaris HOM05D000963 ORTHO05D005131 1.7e-08 63.2 50 64.0
Medtr8g040260 Medicago truncatula HOM05D000963 ORTHO05D005131 1.7e-08 63.2 77 51.9
Sc05g0002290 Simmondsia chinensis HOM05D000963 ORTHO05D005131 1.7e-08 63.2 38 76.3
arahy.Tifrunner.gnm1.ann1.NK9AGX Arachis hypogaea HOM05D000089 ORTHO05D011117 2.2e-08 62.8 54 64.8
Gohir.D12G186150 Gossypium hirsutum HOM05D000963 ORTHO05D011117 2.8e-08 62.4 42 73.8
Oeu038562.1 Olea europaea HOM05D000963 ORTHO05D011117 2.8e-08 62.4 42 73.8
CSS0000719 Camellia sinensis var. sinensis HOM05D000963 ORTHO05D005131 4.8e-08 61.6 42 69.0
Sopen01g027140 Solanum pennellii HOM05D000963 ORTHO05D011117 4.8e-08 61.6 35 85.7
arahy.Tifrunner.gnm1.ann1.UXAL1K Arachis hypogaea HOM05D000963 ORTHO05D011117 6.3e-08 61.2 35 85.7
arahy.Tifrunner.gnm1.ann1.MJQ8WH Arachis hypogaea HOM05D000963 ORTHO05D011117 8.2e-08 60.8 35 85.7
Migut.D01399 Erythranthe guttata HOM05D000963 ORTHO05D011117 1.4e-07 60.1 91 42.9
Oeu012823.1 Olea europaea HOM05D000963 ORTHO05D005131 1.4e-07 60.1 32 87.5
CSS0012622 Camellia sinensis var. sinensis HOM05D000963 ORTHO05D011117 1.8e-07 59.7 41 73.2
arahy.Tifrunner.gnm1.ann1.BMCQ1I Arachis hypogaea HOM05D000963 ORTHO05D005131 3.1e-07 58.9 52 65.4
BraSC138t45525Z Brassica rapa HOM05D000963 ORTHO05D011117 3.1e-07 58.9 35 85.7
Manes.02G203601 Manihot esculenta HOM05D000963 ORTHO05D005131 3.1e-07 58.9 82 46.3
PGSC0003DMG400003919 Solanum tuberosum HOM05D000963 ORTHO05D005131 3.1e-07 58.9 42 59.5
BraA07t28395Z Brassica rapa HOM05D000963 ORTHO05D005131 4.1e-07 58.5 44 63.6
MBI13_g30267_MAGBIO Magnolia biondii HOM05D000571 ORTHO05D000435 4.1e-07 58.5 33 78.8
BolSC46t60969H Brassica oleracea HOM05D000963 ORTHO05D005131 5.3e-07 58.2 40 72.5
Sopen11g020200 Solanum pennellii HOM05D000004 ORTHO05D000002 5.3e-07 58.2 32 81.2
TAR629G1823 Trochodendron aralioides HOM05D001041 ORTHO05D000846 9.1e-07 57.4 34 82.4
Cpa.g.sc86.15 Carica papaya HOM05D000963 ORTHO05D005131 2.0e-06 56.2 35 71.4
Nitab4.5_0000729g0060 Nicotiana tabacum HOM05D000963 ORTHO05D005131 2.6e-06 55.8 32 78.1
Gohir.D11G280866 Gossypium hirsutum HOM05D000963 ORTHO05D005131 5.9e-06 54.7 42 61.9
Gorai.007G303200 Gossypium raimondii HOM05D000963 ORTHO05D005131 5.9e-06 54.7 41 63.4


User provided reference genes

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