Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc22g0004580 Simmondsia chinensis HOM05D003987 ORTHO05D004532 1.8e-252 875.5 476 100.0
Hund08928 Selenicereus undatus HOM05D003987 ORTHO05D004532 4.9e-117 425.6 480 59.0
EL10Ac8g18936 Beta vulgaris HOM05D003987 ORTHO05D004532 1.8e-111 407.1 482 52.5
AUR62028348 Chenopodium quinoa HOM05D003987 ORTHO05D004532 1.7e-109 400.6 468 52.4
AUR62025345 Chenopodium quinoa HOM05D003987 ORTHO05D004532 7.1e-108 395.2 468 52.8
Dinv37095 Davidia involucrata HOM05D003987 ORTHO05D004532 1.4e-92 344.4 474 51.9
GSVIVG01034033001 Vitis vinifera HOM05D003987 ORTHO05D004532 1.0e-90 338.2 476 50.0
CSS0027188 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 1.0e-85 321.6 521 46.8
Lj2A83T77 Lonicera japonica HOM05D003987 ORTHO05D004532 8.5e-85 318.5 473 45.9
CSS0016809 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 1.3e-82 311.2 435 50.3
Thecc.05G024900 Theobroma cacao HOM05D003987 ORTHO05D004532 6.7e-82 308.9 484 47.3
Nn2g13566 Nelumbo nucifera HOM05D003987 ORTHO05D004532 1.5e-81 307.8 485 45.8
Prupe.6G268000 Prunus persica HOM05D003987 ORTHO05D004532 9.7e-81 305.1 472 48.5
Atru.chr8.2120 Acer truncatum HOM05D003987 ORTHO05D004532 3.1e-79 300.1 470 47.4
Duzib093G0208 Durio zibethinus HOM05D003987 ORTHO05D004532 4.1e-79 299.7 487 46.4
Manes.09G100200 Manihot esculenta HOM05D003987 ORTHO05D004532 1.2e-78 298.1 446 48.7
QL07p027561 Quercus lobata HOM05D003987 ORTHO05D004532 1.5e-78 297.7 478 46.4
Potri.006G094600 Populus trichocarpa HOM05D003987 ORTHO05D004532 4.5e-78 296.2 479 44.7
ClCG10G021770 Citrullus lanatus HOM05D003987 ORTHO05D004532 1.7e-77 294.3 475 45.3
Duzib128G2001 Durio zibethinus HOM05D003987 ORTHO05D004532 1.4e-76 291.2 483 45.5
CsaV3_3G034330 Cucumis sativus L. HOM05D003987 ORTHO05D004532 5.5e-76 289.3 470 44.7
Sabra06G0072400 Salix brachista HOM05D003987 ORTHO05D004532 1.2e-75 288.1 479 43.2
PGSC0003DMG400020336 Solanum tuberosum HOM05D003987 ORTHO05D004532 2.7e-75 287.0 457 49.7
Gorai.012G110200 Gossypium raimondii HOM05D003987 ORTHO05D004532 3.6e-75 286.6 480 47.1
Gohir.D04G127200 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.4e-74 284.6 480 47.1
Peaxi162Scf01302g00045 Petunia axillaris HOM05D003987 ORTHO05D004532 3.0e-74 283.5 489 48.5
Sopen09g006640 Solanum pennellii HOM05D003987 ORTHO05D004532 3.0e-74 283.5 457 48.8
Ciclev10011513m.g Citrus clementina HOM05D003987 ORTHO05D004532 6.7e-74 282.3 468 45.3
Gorai.002G259700 Gossypium raimondii HOM05D003987 ORTHO05D004532 1.1e-73 281.6 492 45.3
Cfa017278 Carpinus fangiana HOM05D003987 ORTHO05D004532 1.5e-73 281.2 467 47.1
CSS0029662 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 2.6e-73 280.4 470 43.6
Haze_20924 Corylus avellana HOM05D003987 ORTHO05D004532 2.6e-73 280.4 474 46.0
Lsat_1_v5_gn_9_33201 Lactuca sativa HOM05D003987 ORTHO05D004532 2.6e-73 280.4 490 43.7
SalBow3G0011 Salvia bowleyana HOM05D003987 ORTHO05D004532 2.6e-73 280.4 482 43.2
Potri.016G109100 Populus trichocarpa HOM05D003987 ORTHO05D004532 3.3e-73 280.0 478 45.0
MELO3C009204.2 Cucumis melo HOM05D003987 ORTHO05D004532 5.7e-73 279.3 470 44.7
Gohir.A01G224300 Gossypium hirsutum HOM05D003987 ORTHO05D004532 9.7e-73 278.5 492 45.7
Actinidia05340 Actinidia chinensis HOM05D003987 ORTHO05D004532 4.8e-72 276.2 512 42.0
Dinv35526 Davidia involucrata HOM05D003987 ORTHO05D004532 4.1e-71 273.1 481 45.7
Oeu018344.1 Olea europaea HOM05D003987 ORTHO05D004532 2.6e-70 270.4 453 46.8
Gohir.A04G086900 Gossypium hirsutum HOM05D003987 ORTHO05D004532 3.4e-70 270.0 478 45.8
COL.COLO4_14650 Corchorus olitorius HOM05D003987 ORTHO05D004532 1.7e-69 267.7 417 49.9
Sed0025444 Sechium edule HOM05D003987 ORTHO05D004532 1.7e-69 267.7 440 46.4
Cpa.g.sc56.87 Carica papaya HOM05D003987 ORTHO05D004532 2.2e-69 267.3 482 41.5
vmacro08611 Vaccinium macrocarpon HOM05D003987 ORTHO05D004532 2.9e-69 266.9 483 45.8
Peaxi162Scf00014g00921 Petunia axillaris HOM05D003987 ORTHO05D004532 3.8e-69 266.5 480 44.8
TAR633G1447 Trochodendron aralioides HOM05D003987 ORTHO05D004532 2.5e-68 263.8 482 44.0
MD04G1143500 Malus domestica HOM05D003987 ORTHO05D004532 3.2e-68 263.5 469 46.7
RcHm_v2.0_Chr3g0464181 Rosa chinensis HOM05D003987 ORTHO05D004532 1.2e-67 261.5 488 41.8
Glyma.07G142800 Glycine max HOM05D003987 ORTHO05D004532 1.6e-67 261.2 444 42.8
MBI14_g28607_MAGBIO Magnolia biondii HOM05D003987 ORTHO05D004532 1.6e-67 261.2 434 42.4
PGSC0003DMG400019132 Solanum tuberosum HOM05D003987 ORTHO05D004532 2.1e-67 260.8 495 42.0
Glyma.18G193700 Glycine max HOM05D003987 ORTHO05D004532 4.7e-67 259.6 445 42.7
Cc06_g01840 Coffea canephora HOM05D003987 ORTHO05D004532 1.5e-65 254.6 475 41.7
Nitab4.5_0000119g0280 Nicotiana tabacum HOM05D003987 ORTHO05D004532 2.6e-65 253.8 444 43.2
Nitab4.5_0017865g0010 Nicotiana tabacum HOM05D003987 ORTHO05D004532 3.3e-65 253.4 443 44.0
Lj1g0003107 Lotus japonicus HOM05D003987 ORTHO05D004532 4.4e-65 253.1 471 41.8
MD12G1157700 Malus domestica HOM05D003987 ORTHO05D004532 1.7e-64 251.1 474 44.7
arahy.Tifrunner.gnm1.ann1.B3S732 Arachis hypogaea HOM05D003987 ORTHO05D004532 3.7e-64 250.0 452 44.2
arahy.Tifrunner.gnm1.ann1.S0ZXK0 Arachis hypogaea HOM05D003987 ORTHO05D004532 1.8e-63 247.7 451 43.9
Migut.J00243 Erythranthe guttata HOM05D003987 ORTHO05D004532 1.8e-63 247.7 475 40.2
HanXRQChr01g0001271 Helianthus annuus HOM05D003987 ORTHO05D004532 5.3e-63 246.1 464 44.6
Phvul.008G111900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 5.3e-63 246.1 446 41.3
Lj3g0003026 Lotus japonicus HOM05D003987 ORTHO05D004532 7.0e-63 245.7 431 43.2
CANSAT78G1629 Cannabis sativa HOM05D003987 ORTHO05D004532 9.1e-63 245.4 478 39.7
Oeu044376.1 Olea europaea HOM05D003987 ORTHO05D004532 1.6e-62 244.6 411 44.0
PSO339G5295 Papaver somniferum HOM05D003987 ORTHO05D004532 1.6e-62 244.6 438 42.2
Oeu009906.1 Olea europaea HOM05D003987 ORTHO05D004532 2.6e-62 243.8 460 45.7
Medtr4g019040 Medicago truncatula HOM05D003987 ORTHO05D004532 7.7e-62 242.3 450 42.9
Aqoxy1G00765 Aquilegia oxysepala HOM05D003987 ORTHO05D004532 1.0e-61 241.9 432 40.7
PGR031G1271 Punica granatum HOM05D003987 ORTHO05D004532 1.0e-61 241.9 473 40.8
Migut.L01985 Erythranthe guttata HOM05D003987 ORTHO05D004532 1.7e-61 241.1 432 42.4
Hma1.2p1_0244F.1_g101070 Hydrangea macrophylla HOM05D003987 ORTHO05D004532 1.7e-61 241.1 474 41.4
PSO384G1037 Papaver somniferum HOM05D003987 ORTHO05D004532 1.7e-61 241.1 440 41.8
FvH4_6g12360 Fragaria vesca HOM05D003987 ORTHO05D004532 2.2e-61 240.7 485 40.4
FAN02G3471 Fragaria x ananassa HOM05D003987 ORTHO05D004532 8.5e-61 238.8 494 39.7
TWI77G0200 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 4.2e-60 236.5 476 40.5
DCAR_028789 Daucus carota HOM05D003987 ORTHO05D004532 5.5e-60 236.1 469 38.6
VMungo1383G2510 Vigna mungo HOM05D003987 ORTHO05D004532 5.5e-60 236.1 447 42.7
Lalb_Chr01g0022851 Lupinus albus HOM05D003987 ORTHO05D004532 6.1e-59 232.6 473 41.4
Ca_20115_v3 Cicer arietinum L. HOM05D003987 ORTHO05D004532 8.0e-59 232.3 441 44.2
Nitab4.5_0000008g0400 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.8e-58 231.1 507 41.4
Lalb_Chr19g0124881 Lupinus albus HOM05D003987 ORTHO05D004532 1.5e-57 228.0 422 43.1
Psat7g242560 Pisum sativum HOM05D003987 ORTHO05D004532 1.3e-56 224.9 500 40.2
Sp4g20270 Schrenkiella parvula HOM05D003987 ORTHO05D004532 4.8e-56 223.0 475 40.0
FAN09G0914 Fragaria x ananassa HOM05D003987 ORTHO05D004532 2.0e-54 217.6 485 38.4
Carub.0004s1992 Capsella rubella HOM05D003987 ORTHO05D004532 3.5e-54 216.9 473 37.6
AT2G37960 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 7.2e-52 209.1 465 37.8
Thhalv10010371m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 9.4e-52 208.8 464 37.1
AL4G34930 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 1.2e-51 208.4 466 37.8
AL5G35070 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 1.2e-51 208.4 466 38.8
THA.LOC104805691 Tarenaya hassleriana HOM05D003987 ORTHO05D004532 1.6e-51 208.0 428 39.5
BraA05t19770Z Brassica rapa HOM05D003987 ORTHO05D004532 8.0e-51 205.7 420 39.3
SGA_v2.0_scaffold75G24988 Striga asiatica HOM05D003987 ORTHO05D004532 8.0e-51 205.7 444 39.4
BolC4t22577H Brassica oleracea HOM05D003987 ORTHO05D004532 1.8e-50 204.5 423 41.1
Sed0006107 Sechium edule HOM05D003987 ORTHO05D004532 2.6e-49 200.7 391 39.4
DCAR_012161 Daucus carota HOM05D003987 ORTHO05D004532 4.4e-49 199.9 474 35.9
BcaC02g11934 Brassica carinata HOM05D003987 ORTHO05D004532 9.8e-49 198.7 436 38.5
A05p08030 Brassica napus HOM05D003987 ORTHO05D004532 1.7e-48 198.0 410 38.8
Thhalv10016588m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 1.7e-48 198.0 461 39.0
Solyc09g011820.4 Solanum lycopersicum HOM05D003987 ORTHO05D004532 1.8e-47 194.5 384 44.5
AT3G54060 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 3.1e-47 193.7 459 40.5
BolC4t28137H Brassica oleracea HOM05D003987 ORTHO05D004532 3.1e-47 193.7 481 38.0
TAR623G1001 Trochodendron aralioides HOM05D003987 ORTHO05D004532 4.1e-47 193.4 440 39.3
C04p09710 Brassica napus HOM05D003987 ORTHO05D004532 5.4e-47 193.0 436 38.1
BcaB02g09232 Brassica carinata HOM05D003987 ORTHO05D004532 9.1e-47 192.2 429 38.0
arahy.Tifrunner.gnm1.ann1.C5KK4K Arachis hypogaea HOM05D003987 ORTHO05D004532 7.7e-46 189.1 418 41.4
unitig_749.g14175 Utricularia gibba HOM05D003987 ORTHO05D004532 1.3e-45 188.3 462 35.9
Sopen10g036150 Solanum pennellii HOM05D003987 ORTHO05D004532 1.7e-45 188.0 478 37.7
arahy.Tifrunner.gnm1.ann1.84Z36X Arachis hypogaea HOM05D003987 ORTHO05D004532 2.9e-45 187.2 477 37.9
A04p29100 Brassica napus HOM05D003987 ORTHO05D004532 3.8e-45 186.8 478 39.5
arahy.Tifrunner.gnm1.ann1.L5BN96 Arachis hypogaea HOM05D003987 ORTHO05D004532 1.9e-44 184.5 472 37.3
Nitab4.5_0002152g0110 Nicotiana tabacum HOM05D003987 ORTHO05D004532 3.2e-44 183.7 465 38.5
BraA04t18380Z Brassica rapa HOM05D003987 ORTHO05D004532 7.2e-44 182.6 483 38.1
Aa31LG10G8760 Aethionema arabicum HOM05D003987 ORTHO05D004532 2.3e-42 177.6 463 33.7
Duzib093G1974 Durio zibethinus HOM05D003987 ORTHO05D004532 6.8e-42 176.0 332 39.2
C06p21870 Brassica napus HOM05D003987 ORTHO05D004532 3.4e-41 173.7 423 39.5
BraA07t29878Z Brassica rapa HOM05D003987 ORTHO05D004532 8.3e-40 169.1 425 35.8
CDE09G1167 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 1.1e-39 168.7 451 34.1
A07p21960 Brassica napus HOM05D003987 ORTHO05D004532 4.1e-39 166.8 411 35.5
BcaC08g44664 Brassica carinata HOM05D003987 ORTHO05D004532 5.4e-39 166.4 424 38.2
Gohir.D01G213600 Gossypium hirsutum HOM05D003987 ORTHO05D004532 5.4e-39 166.4 384 37.0
CDE02G0690 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 7.8e-38 162.5 457 33.5
BcaB02g07750 Brassica carinata HOM05D003987 ORTHO05D004532 1.1e-36 158.7 404 37.9
Sp5g18210 Schrenkiella parvula HOM05D003987 ORTHO05D004532 5.6e-36 156.4 422 33.4
CARHR132510 Cardamine hirsuta HOM05D003987 ORTHO05D004532 1.6e-35 154.8 477 34.2
ECA248G1591 Erigeron canadensis HOM05D003987 ORTHO05D004532 1.4e-34 151.8 456 34.6
HPP92_003415 Vanilla planifolia HOM05D003987 ORTHO05D004532 8.9e-34 149.1 424 31.6
Actinidia01122 Actinidia chinensis HOM05D003987 ORTHO05D004532 7.0e-31 139.4 326 37.7
ATR0618G159 Amborella trichopoda HOM05D003987 ORTHO05D004532 3.5e-30 137.1 452 31.0
MSTRG.19041 Avicennia marina HOM05D003987 ORTHO05D004532 3.5e-30 137.1 311 36.7
MSTRG.19040 Avicennia marina HOM05D003987 ORTHO05D004532 3.9e-29 133.7 135 57.8
CAN.G351.10 Capsicum annuum HOM05D003987 ORTHO05D004532 5.0e-29 133.3 220 42.3
Glyma.01G108800 Glycine max HOM05D003987 ORTHO05D004532 5.0e-29 133.3 405 32.3
unitig_26.g9099 Utricularia gibba HOM05D003987 ORTHO05D004532 5.0e-29 133.3 294 37.1
Sp5g08320 Schrenkiella parvula HOM05D003987 ORTHO05D004532 6.6e-29 132.9 458 29.3
TPR.G8182 Trifolium pratense HOM05D003987 ORTHO05D004532 3.3e-28 130.6 303 36.0
Glyma.U031101 Glycine max HOM05D003987 ORTHO05D004532 9.5e-28 129.0 403 32.0
Glyma.01G108900 Glycine max HOM05D003987 ORTHO05D004532 2.1e-27 127.9 403 31.8
Carub.0005s2065 Capsella rubella HOM05D003987 ORTHO05D004532 3.1e-26 124.0 398 32.7
Solyc10g086740.3 Solanum lycopersicum HOM05D003987 ORTHO05D004532 2.0e-25 121.3 325 37.2
FAN05G0535 Fragaria x ananassa HOM05D003987 ORTHO05D004532 3.4e-25 120.6 375 31.2
Glyma.03G074167 Glycine max HOM05D003987 ORTHO05D004532 6.4e-24 116.3 372 29.6
Solyc10g086750.1 Solanum lycopersicum HOM05D003987 ORTHO05D004532 1.4e-23 115.2 137 51.8
Glyma.01G153900 Glycine max HOM05D003987 ORTHO05D004532 7.0e-23 112.8 363 32.0
TPR.G8224 Trifolium pratense HOM05D003987 ORTHO05D004532 6.0e-22 109.8 145 57.2
SEGI_16848 Sequoiadendron giganteum HOM05D003987 ORTHO05D004532 3.9e-21 107.1 499 27.9
Sabra16G0105800 Salix brachista HOM05D003987 ORTHO05D004532 1.6e-19 101.7 138 42.0
Medtr7g066170 Medicago truncatula HOM05D003987 ORTHO05D004532 4.0e-18 97.1 215 35.8
Rhsim07G0146000 Rhododendron simsii HOM05D003987 ORTHO05D004532 3.7e-16 90.5 232 37.5
TWI74G0508 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 3.7e-16 90.5 447 29.1
Dinv04008 Davidia involucrata HOM05D003987 ORTHO05D004532 1.9e-15 88.2 189 36.5
CDE04G2728 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 7.1e-15 86.3 118 45.8
Phvul.005G150800 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 9.2e-15 85.9 220 30.9
Eucgr.A00531 Eucalyptus grandis HOM05D003987 ORTHO05D004532 1.6e-14 85.1 222 33.3
TPR.G13647 Trifolium pratense HOM05D003987 ORTHO05D004532 4.6e-14 83.6 204 30.9
TPR.G34870 Trifolium pratense HOM05D003987 ORTHO05D004532 8.6e-13 79.3 169 38.5
Phvul.006G111000 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 1.5e-12 78.6 181 32.6
Psat6g189000 Pisum sativum HOM05D003987 ORTHO05D004532 3.3e-12 77.4 136 39.7
Zm00001eb298020 Zea mays HOM05D003987 ORTHO05D004532 6.2e-11 73.2 427 26.0
VMungo1309G3141 Vigna mungo HOM05D014262 ORTHO05D018084 1.8e-10 71.6 239 30.1
SHI32881 Sapria himalayana HOM05D003987 ORTHO05D004532 5.2e-10 70.1 63 54.0
FAN14G4402 Fragaria x ananassa HOM05D003987 ORTHO05D004532 6.8e-10 69.7 132 34.1
Phvul.010G006900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 9.9e-09 65.9 411 25.1
Phvul.010G006100 Phaseolus vulgaris HOM05D014262 ORTHO05D004532 3.8e-08 63.9 273 26.0
VMungo0331G1594 Vigna mungo HOM05D003987 ORTHO05D004532 8.4e-08 62.8 138 37.0
BcaC02g11935 Brassica carinata HOM05D003987 ORTHO05D004532 1.1e-07 62.4 50 64.0
BolC6t37375H Brassica oleracea HOM05D003987 ORTHO05D004532 1.1e-07 62.4 70 44.3
Os03g0100010 Oryza sativa ssp. japonica HOM05D003987 ORTHO05D004532 1.1e-07 62.4 67 47.8
VMungo1309G2694 Vigna mungo HOM05D014262 ORTHO05D018084 1.4e-07 62.0 197 29.9
SHI32880 Sapria himalayana HOM05D003987 ORTHO05D004532 3.5e-06 57.4 193 32.1


User provided reference genes

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