Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc22g0004560 Simmondsia chinensis HOM05D004639 ORTHO05D005201 0.0e+00 1117.1 584 100.0
Ah.05g167280 Amaranthus hybridus HOM05D001485 ORTHO05D001407 3.7e-50 203.8 203 54.7
Hund25534 Selenicereus undatus HOM05D004639 ORTHO05D005201 1.4e-49 201.8 172 61.0
Dinv01634 Davidia involucrata HOM05D004639 ORTHO05D005201 3.9e-47 193.7 198 51.0
AUR62032895 Chenopodium quinoa HOM05D004639 ORTHO05D005201 3.6e-45 187.2 466 34.1
Manes.18G143900 Manihot esculenta HOM05D004639 ORTHO05D005201 6.2e-45 186.4 130 64.6
vmacro04281 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 2.6e-43 181.0 121 69.4
Actinidia23035 Actinidia chinensis HOM05D004639 ORTHO05D005201 7.5e-43 179.5 157 56.1
vmacro22429 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 9.8e-43 179.1 121 69.4
Cc00_g06760 Coffea canephora HOM05D004639 ORTHO05D005201 2.2e-42 177.9 151 57.0
MD00G1164900 Malus domestica HOM05D004639 ORTHO05D005201 2.9e-42 177.6 133 63.9
EL10As7g23724 Beta vulgaris HOM05D004639 ORTHO05D005201 3.7e-42 177.2 203 48.8
Peaxi162Scf00331g00311 Petunia axillaris HOM05D004639 ORTHO05D005201 4.9e-42 176.8 125 64.0
Nitab4.5_0010824g0010 Nicotiana tabacum HOM05D004639 ORTHO05D005201 8.3e-42 176.0 132 62.1
AUR62017756 Chenopodium quinoa HOM05D004639 ORTHO05D005201 1.1e-41 175.6 595 30.3
Nitab4.5_0001799g0030 Nicotiana tabacum HOM05D004639 ORTHO05D005201 1.1e-41 175.6 132 62.9
Hma1.2p1_1077F.1_g254710 Hydrangea macrophylla HOM05D004639 ORTHO05D005201 1.4e-41 175.3 159 57.9
GSVIVG01003641001 Vitis vinifera HOM05D004639 ORTHO05D005201 1.4e-41 175.3 130 63.1
Nitab4.5_0000843g0080 Nicotiana tabacum HOM05D004639 ORTHO05D005201 1.9e-41 174.9 130 62.3
Rhsim11G0007200 Rhododendron simsii HOM05D004639 ORTHO05D005201 1.9e-41 174.9 121 67.8
arahy.Tifrunner.gnm1.ann1.CP937L Arachis hypogaea HOM05D004639 ORTHO05D005201 2.4e-41 174.5 133 62.4
arahy.Tifrunner.gnm1.ann1.GWL1KB Arachis hypogaea HOM05D004639 ORTHO05D005201 2.4e-41 174.5 133 62.4
TAR376G0371 Trochodendron aralioides HOM05D004639 ORTHO05D005201 2.4e-41 174.5 131 62.6
Lj2g0022882 Lotus japonicus HOM05D004639 ORTHO05D005201 4.1e-41 173.7 130 64.6
Oeu061992.1 Olea europaea HOM05D004639 ORTHO05D005201 5.4e-41 173.3 155 58.1
Cpa.g.sc15.68 Carica papaya HOM05D004639 ORTHO05D005201 7.0e-41 172.9 141 60.3
CANSAT64G1383 Cannabis sativa HOM05D004639 ORTHO05D005201 1.2e-40 172.2 120 65.8
CANSAT64G2443 Cannabis sativa HOM05D004639 ORTHO05D005201 1.2e-40 172.2 120 65.8
Ciclev10028470m.g Citrus clementina HOM05D004639 ORTHO05D005201 2.0e-40 171.4 121 62.8
TWI15G1026 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 2.7e-40 171.0 123 61.8
MSTRG.8994 Avicennia marina HOM05D004639 ORTHO05D005201 3.5e-40 170.6 153 56.9
Aqoxy4G01839 Aquilegia oxysepala HOM05D004639 ORTHO05D005201 4.6e-40 170.2 131 61.8
CANSAT64G2852 Cannabis sativa HOM05D004639 ORTHO05D005201 4.6e-40 170.2 121 65.3
Duzib235G0802 Durio zibethinus HOM05D004639 ORTHO05D005201 6.0e-40 169.9 121 66.1
Lj2g0020909 Lotus japonicus HOM05D004639 ORTHO05D005201 6.0e-40 169.9 157 53.5
Aa31LG5G18470 Aethionema arabicum HOM05D004639 ORTHO05D005201 1.0e-39 169.1 143 58.7
THA.LOC104805811 Tarenaya hassleriana HOM05D004639 ORTHO05D005201 1.0e-39 169.1 121 61.2
Gohir.A09G007300 Gossypium hirsutum HOM05D004639 ORTHO05D005201 3.0e-39 167.5 121 64.5
Gorai.006G008100 Gossypium raimondii HOM05D004639 ORTHO05D005201 3.0e-39 167.5 121 64.5
Carub.0003s0750 Capsella rubella HOM05D004639 ORTHO05D005201 5.0e-39 166.8 141 58.9
CAN.G989.2 Capsicum annuum HOM05D004639 ORTHO05D005201 5.0e-39 166.8 133 58.6
VMungo0540G1855 Vigna mungo HOM05D004639 ORTHO05D005201 5.0e-39 166.8 151 53.6
ECA234G0087 Erigeron canadensis HOM05D004639 ORTHO05D005201 6.6e-39 166.4 131 58.8
Gohir.D09G006600 Gossypium hirsutum HOM05D004639 ORTHO05D005201 1.5e-38 165.2 121 63.6
SalBow6G0181 Salvia bowleyana HOM05D004639 ORTHO05D005201 1.5e-38 165.2 131 56.5
SalBow6G5700 Salvia bowleyana HOM05D004639 ORTHO05D005201 1.5e-38 165.2 131 56.5
BcaB04g16901 Brassica carinata HOM05D004639 ORTHO05D005201 1.9e-38 164.9 122 62.3
TWI31G0951 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 1.9e-38 164.9 123 61.0
Thhalv10020704m.g Eutrema salsugineum HOM05D004639 ORTHO05D005201 2.5e-38 164.5 147 56.5
RcHm_v2.0_Chr3g0497491 Rosa chinensis HOM05D004639 ORTHO05D005201 2.5e-38 164.5 150 55.3
QL01p053168 Quercus lobata HOM05D004639 ORTHO05D005201 4.3e-38 163.7 147 55.1
QL01p053770 Quercus lobata HOM05D004639 ORTHO05D005201 4.3e-38 163.7 147 55.1
Solyc02g021100.3 Solanum lycopersicum HOM05D004639 ORTHO05D005201 4.3e-38 163.7 128 57.8
Sopen02g005400 Solanum pennellii HOM05D004639 ORTHO05D005201 4.3e-38 163.7 128 57.8
FAN19G3130 Fragaria x ananassa HOM05D004639 ORTHO05D005201 5.6e-38 163.3 179 50.8
FvH4_1g27870 Fragaria vesca HOM05D004639 ORTHO05D005201 9.5e-38 162.5 179 50.8
FAN26G1776 Fragaria x ananassa HOM05D004639 ORTHO05D005201 9.5e-38 162.5 179 50.8
Sp3g06840 Schrenkiella parvula HOM05D004639 ORTHO05D005201 9.5e-38 162.5 141 56.0
ATR0068G005 Amborella trichopoda HOM05D004639 ORTHO05D005201 2.1e-37 161.4 130 56.9
Migut.A01100 Erythranthe guttata HOM05D004639 ORTHO05D005201 2.1e-37 161.4 527 31.3
MBI03_g13041_MAGBIO Magnolia biondii HOM05D004639 ORTHO05D005201 2.1e-37 161.4 129 59.7
PGR031G3121 Punica granatum HOM05D004639 ORTHO05D005201 2.1e-37 161.4 123 61.0
BraA07t27872Z Brassica rapa HOM05D004639 ORTHO05D005201 2.8e-37 161.0 122 60.7
SGA_v2.0_scaffold291G47333 Striga asiatica HOM05D004639 ORTHO05D005201 2.8e-37 161.0 199 46.7
Glyma.13G009500 Glycine max HOM05D004639 ORTHO05D005201 3.6e-37 160.6 182 49.5
AL3G19300 Arabidopsis lyrata HOM05D004639 ORTHO05D005201 4.7e-37 160.2 156 53.8
CiPaw.15G093500 Carya illinoinensis HOM05D004639 ORTHO05D005201 4.7e-37 160.2 145 53.1
unitig_22.g6364 Utricularia gibba HOM05D004639 ORTHO05D005201 4.7e-37 160.2 157 52.9
DCAR_016067 Daucus carota HOM05D004639 ORTHO05D005201 6.2e-37 159.8 133 58.6
Thecc.04G056700 Theobroma cacao HOM05D004639 ORTHO05D005201 8.1e-37 159.5 121 62.0
Atru.chr9.65 Acer truncatum HOM05D004639 ORTHO05D005201 1.1e-36 159.1 131 56.5
A07p00740 Brassica napus HOM05D004639 ORTHO05D005201 2.3e-36 157.9 156 53.2
Phvul.L000400 Phaseolus vulgaris HOM05D004639 ORTHO05D005201 2.3e-36 157.9 148 54.7
Lsat_1_v5_gn_3_140620 Lactuca sativa HOM05D004639 ORTHO05D005201 5.2e-36 156.8 125 56.8
SHI25031 Sapria himalayana HOM05D004639 ORTHO05D005201 8.9e-36 156.0 116 62.1
PSO384G4518 Papaver somniferum HOM05D004639 ORTHO05D005201 1.2e-35 155.6 121 58.7
PSO493G0020 Papaver somniferum HOM05D004639 ORTHO05D005201 1.2e-35 155.6 121 58.7
ECA234G3785 Erigeron canadensis HOM05D004639 ORTHO05D005201 1.5e-35 155.2 196 43.4
C07p01740 Brassica napus HOM05D004639 ORTHO05D005201 2.6e-35 154.5 156 52.6
BolC7t40577H Brassica oleracea HOM05D004639 ORTHO05D005201 2.6e-35 154.5 156 52.6
HanXRQChr12g0386021 Helianthus annuus HOM05D004639 ORTHO05D005201 3.4e-35 154.1 110 60.9
HPP92_007076 Vanilla planifolia HOM05D004639 ORTHO05D005201 4.4e-35 153.7 125 54.4
HanXRQChr16g0532761 Helianthus annuus HOM05D004639 ORTHO05D005201 9.8e-35 152.5 110 60.0
BcaC06g36658 Brassica carinata HOM05D004639 ORTHO05D005201 1.3e-34 152.1 155 52.3
HPP92_007024 Vanilla planifolia HOM05D004639 ORTHO05D005201 1.7e-34 151.8 125 53.6
Prupe.4G286600 Prunus persica HOM05D004639 ORTHO05D005201 2.2e-34 151.4 528 28.8
ClCG08G005050 Citrullus lanatus HOM05D004639 ORTHO05D005201 4.9e-34 150.2 156 50.0
SEGI_27362 Sequoiadendron giganteum HOM05D004639 ORTHO05D005201 8.3e-34 149.4 113 60.2
Nn5g27169 Nelumbo nucifera HOM05D004639 ORTHO05D005201 1.1e-33 149.1 130 56.2
Potri.012G037700 Populus trichocarpa HOM05D004639 ORTHO05D005201 3.2e-33 147.5 132 52.3
Sabra12G0026100 Salix brachista HOM05D004639 ORTHO05D005201 7.1e-33 146.4 145 49.7
Potri.014G189400 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.2e-32 145.6 168 45.2
Lalb_Chr00c23g0406301 Lupinus albus HOM05D004639 ORTHO05D005201 1.6e-32 145.2 120 56.7
MELO3C022885.2 Cucumis melo HOM05D004639 ORTHO05D005201 2.7e-32 144.4 133 50.4
Eucgr.B01580 Eucalyptus grandis HOM05D004639 ORTHO05D005201 1.3e-31 142.1 153 49.0
Medtr0037s0250 Medicago truncatula HOM05D004639 ORTHO05D005201 1.1e-30 139.0 145 49.7
Potri.014G187300 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.1e-30 139.0 168 44.6
Sed0017627 Sechium edule HOM05D004639 ORTHO05D005201 2.5e-30 137.9 143 48.3
CsaV3_5G037160 Cucumis sativus L. HOM05D004639 ORTHO05D005201 1.2e-29 135.6 179 40.8
Potri.014G187000 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.2e-29 135.6 168 44.0
Medtr0037s0060 Medicago truncatula HOM05D004639 ORTHO05D005201 3.6e-29 134.0 148 48.0
Sabra19G0060700 Salix brachista HOM05D004639 ORTHO05D005201 4.7e-29 133.7 112 55.4
Mapoly0049s0024 Marchantia polymorpha HOM05D004639 ORTHO05D005201 6.2e-29 133.3 105 59.0
Sabra19G0060900 Salix brachista HOM05D004639 ORTHO05D005201 8.1e-29 132.9 168 42.9
Sabra19G0061000 Salix brachista HOM05D004639 ORTHO05D005201 8.1e-29 132.9 168 42.9
SabraUnG0000100 Salix brachista HOM05D004639 ORTHO05D005201 8.1e-29 132.9 168 42.9
SabraUnG0000200 Salix brachista HOM05D004639 ORTHO05D005201 8.1e-29 132.9 168 42.9
CBR_g37349 Chara braunii HOM05D000004 ORTHO05D000002 1.3e-26 125.6 105 55.2
BcaC08g44553 Brassica carinata HOM05D004639 ORTHO05D005201 3.7e-26 124.0 127 51.2
CDE02G2478 Ceratophyllum demersum HOM05D004639 ORTHO05D005201 4.9e-26 123.6 116 51.7
Lj2g0018447 Lotus japonicus HOM05D004639 ORTHO05D005201 8.4e-26 122.9 128 46.9
Potri.014G187766 Populus trichocarpa HOM05D004639 ORTHO05D005201 4.1e-25 120.6 126 47.6
Zm00001eb264110 Zea mays HOM05D004639 ORTHO05D005201 2.7e-24 117.9 131 43.5
Pp3c15_4380 Physcomitrium patens HOM05D004639 ORTHO05D005201 4.6e-24 117.1 100 52.0
Os09g0101100 Oryza sativa ssp. japonica HOM05D004639 ORTHO05D005201 2.3e-23 114.8 161 37.9
SMO334G0025 Selaginella moellendorffii HOM05D004639 ORTHO05D005201 8.6e-23 112.8 101 50.5
CBR_g51322 Chara braunii HOM05D004639 ORTHO05D005201 1.1e-22 112.5 102 53.9
COL.COLO4_05916 Corchorus olitorius HOM05D004639 ORTHO05D005201 2.8e-21 107.8 141 45.4
Sabra19G0060200 Salix brachista HOM05D004639 ORTHO05D005201 1.2e-19 102.4 176 38.1
Haze_08020 Corylus avellana HOM05D004639 ORTHO05D005201 3.2e-17 94.4 72 65.3
CARHR082670 Cardamine hirsuta HOM05D004639 ORTHO05D005201 4.2e-17 94.0 68 60.3
Sabra19G0060600 Salix brachista HOM05D004639 ORTHO05D005201 7.1e-17 93.2 143 38.5
CSS0021628 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 1.6e-16 92.0 54 75.9
PRCOL_00006916 Prasinoderma coloniale HOM05D004639 ORTHO05D005201 2.1e-16 91.7 158 34.8
Cre05.g234250 Chlamydomonas reinhardtii HOM05D004639 ORTHO05D005201 3.5e-16 90.9 101 36.6
QL01p052883 Quercus lobata HOM05D011240 ORTHO05D005201 4.6e-16 90.5 67 56.7
Lalb_Chr18g0049251 Lupinus albus HOM05D004639 ORTHO05D005201 7.8e-16 89.7 68 60.3
CARHR082660 Cardamine hirsuta HOM05D004639 ORTHO05D005201 1.3e-15 89.0 56 69.6
TPR.G22982 Trifolium pratense HOM05D004639 ORTHO05D005201 1.3e-15 89.0 68 58.8
TPR.G9531 Trifolium pratense HOM05D004639 ORTHO05D005201 1.7e-15 88.6 68 54.4
Dinv08242 Davidia involucrata HOM05D004639 ORTHO05D005201 3.0e-15 87.8 64 57.8
C06p20180 Brassica napus HOM05D004639 ORTHO05D005201 3.9e-15 87.4 122 40.2
BolC6t37199H Brassica oleracea HOM05D004639 ORTHO05D005201 3.9e-15 87.4 122 40.2
Lalb_Chr00c55g0413711 Lupinus albus HOM05D004639 ORTHO05D005201 5.1e-15 87.0 66 60.6
QL02p058806 Quercus lobata HOM05D004639 ORTHO05D005201 2.8e-13 81.3 81 54.3
QL01p054228 Quercus lobata HOM05D004639 ORTHO05D005201 6.2e-13 80.1 81 54.3
Psat1g014800 Pisum sativum HOM05D004639 ORTHO05D005201 1.1e-12 79.3 64 54.7
FAN23G0569 Fragaria x ananassa HOM05D004639 ORTHO05D005201 2.4e-12 78.2 65 56.9
HPP92_015991 Vanilla planifolia HOM05D004639 ORTHO05D005201 2.4e-12 78.2 68 51.5
Medtr6g034730 Medicago truncatula HOM05D004639 ORTHO05D005201 9.0e-12 76.3 65 52.3
AT3G07930 Arabidopsis thaliana HOM05D004639 ORTHO05D005201 5.8e-11 73.6 87 47.1
Lalb_Chr18g0049241 Lupinus albus HOM05D004639 ORTHO05D005201 7.9e-08 63.2 55 50.9
Medtr6g033105 Medicago truncatula HOM05D004639 ORTHO05D005201 1.3e-07 62.4 71 45.1
Gohir.D02G140450 Gossypium hirsutum HOM05D004639 ORTHO05D005201 2.5e-06 58.2 39 61.5


User provided reference genes

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