Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc22g0004390 Simmondsia chinensis HOM05D004212 ORTHO05D005128 1.7e-182 642.5 315 100.0
GSVIVG01034068001 Vitis vinifera HOM05D004212 ORTHO05D005128 4.7e-100 368.6 297 64.3
Thecc.05G029300 Theobroma cacao HOM05D004212 ORTHO05D005128 9.8e-98 360.9 303 61.4
CiPaw.09G201200 Carya illinoinensis HOM05D004212 ORTHO05D005128 4.1e-96 355.5 301 61.1
CANSAT35G0035 Cannabis sativa HOM05D004212 ORTHO05D005128 1.2e-95 354.0 303 63.4
Cfa010180 Carpinus fangiana HOM05D004212 ORTHO05D005128 3.5e-95 352.4 300 62.3
Manes.09G098300 Manihot esculenta HOM05D004212 ORTHO05D005128 4.6e-95 352.1 304 62.2
Gohir.D01G209900 Gossypium hirsutum HOM05D004212 ORTHO05D005128 1.0e-94 350.9 299 61.5
Gorai.002G255500 Gossypium raimondii HOM05D004212 ORTHO05D005128 1.0e-94 350.9 299 61.5
Gohir.A01G221000 Gossypium hirsutum HOM05D004212 ORTHO05D005128 3.6e-92 342.4 299 60.5
COL.COLO4_14697 Corchorus olitorius HOM05D004212 ORTHO05D005128 3.1e-91 339.3 294 59.5
Haze_20882 Corylus avellana HOM05D004212 ORTHO05D005128 2.0e-90 336.7 333 55.6
CsaV3_4G025590 Cucumis sativus L. HOM05D004212 ORTHO05D005128 2.6e-90 336.3 319 57.4
Haze_20891 Corylus avellana HOM05D004212 ORTHO05D005128 5.8e-90 335.1 333 55.3
TAR633G1640 Trochodendron aralioides HOM05D004212 ORTHO05D005128 1.7e-89 333.6 299 59.2
MELO3C003185.2 Cucumis melo HOM05D004212 ORTHO05D005128 2.9e-89 332.8 319 56.7
EL10Ac3g05638 Beta vulgaris HOM05D004212 ORTHO05D005128 4.9e-89 332.0 311 59.8
Hund00715 Selenicereus undatus HOM05D004212 ORTHO05D005128 5.4e-88 328.6 331 59.8
ClCG04G007620 Citrullus lanatus HOM05D004212 ORTHO05D005128 9.2e-88 327.8 319 55.5
Sed0021611 Sechium edule HOM05D004212 ORTHO05D005128 1.6e-87 327.0 307 59.6
Eucgr.K03043 Eucalyptus grandis HOM05D004212 ORTHO05D005128 2.3e-86 323.2 299 59.2
Prupe.6G264400 Prunus persica HOM05D004212 ORTHO05D005128 8.6e-86 321.2 309 56.6
Cc06_g02090 Coffea canephora HOM05D004212 ORTHO05D005128 1.9e-85 320.1 304 57.6
Lalb_Chr03g0042691 Lupinus albus HOM05D004212 ORTHO05D005128 2.8e-84 316.2 294 56.1
TWI53G1663 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 4.7e-84 315.5 317 57.4
Psat3g133560 Pisum sativum HOM05D004212 ORTHO05D005128 6.2e-84 315.1 293 56.0
Carub.0005s2056 Capsella rubella HOM05D004212 ORTHO05D005128 2.4e-83 313.2 310 55.8
FAN12G3486 Fragaria x ananassa HOM05D004212 ORTHO05D005128 3.1e-83 312.8 298 58.1
AL5G34970 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 4.0e-83 312.4 303 56.4
FAN12G2442 Fragaria x ananassa HOM05D004212 ORTHO05D005128 4.0e-83 312.4 298 58.1
Oeu001834.1 Olea europaea HOM05D004212 ORTHO05D005128 4.0e-83 312.4 304 56.9
Ciclev10021036m.g Citrus clementina HOM05D004212 ORTHO05D005128 5.2e-83 312.0 297 58.2
Peaxi162Scf00975g00132 Petunia axillaris HOM05D004212 ORTHO05D005128 5.2e-83 312.0 304 56.2
AT3G53970 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 1.2e-82 310.8 302 55.6
RcHm_v2.0_Chr4g0406841 Rosa chinensis HOM05D004212 ORTHO05D005128 1.5e-82 310.5 297 59.3
Ca_07566_v3 Cicer arietinum L. HOM05D004212 ORTHO05D005128 2.6e-82 309.7 292 54.5
AUR62021188 Chenopodium quinoa HOM05D004212 ORTHO05D005128 3.4e-82 309.3 316 57.3
Atru.chr8.2089 Acer truncatum HOM05D004212 ORTHO05D005128 5.8e-82 308.5 296 56.8
MSTRG.10244 Avicennia marina HOM05D004212 ORTHO05D005128 7.6e-82 308.1 302 56.0
Sopen09g006170 Solanum pennellii HOM05D004212 ORTHO05D005128 2.2e-81 306.6 306 54.6
Solyc09g011450.4 Solanum lycopersicum HOM05D004212 ORTHO05D005128 2.9e-81 306.2 306 54.9
Nitab4.5_0008116g0030 Nicotiana tabacum HOM05D004212 ORTHO05D005128 3.8e-81 305.8 307 55.4
Lalb_Chr19g0125041 Lupinus albus HOM05D004212 ORTHO05D005128 4.9e-81 305.4 294 55.1
THA.LOC104806541 Tarenaya hassleriana HOM05D004212 ORTHO05D005128 1.1e-80 304.3 315 56.2
TPR.G34923 Trifolium pratense HOM05D004212 ORTHO05D005128 1.1e-80 304.3 298 53.7
FAN07G0792 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.4e-80 303.9 298 56.4
QL07p028338 Quercus lobata HOM05D004212 ORTHO05D005128 3.2e-80 302.8 288 55.2
TWI74G0733 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 4.1e-80 302.4 316 56.3
MD12G1154600 Malus domestica HOM05D004212 ORTHO05D005128 5.4e-80 302.0 317 54.3
Aa31LG10G8930 Aethionema arabicum HOM05D004212 ORTHO05D005128 7.1e-80 301.6 300 56.3
MD04G1138800 Malus domestica HOM05D004212 ORTHO05D005128 7.1e-80 301.6 318 54.1
Hma1.2p1_0671F.1_g200560 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 1.0e-78 297.7 300 55.0
AUR62015980 Chenopodium quinoa HOM05D004212 ORTHO05D005128 3.0e-78 296.2 306 55.9
CARHR163870 Cardamine hirsuta HOM05D004212 ORTHO05D005128 6.6e-78 295.0 306 55.2
Potri.016G103800 Populus trichocarpa HOM05D004212 ORTHO05D005128 6.6e-78 295.0 301 54.2
arahy.Tifrunner.gnm1.ann1.59HWIF Arachis hypogaea HOM05D004212 ORTHO05D005128 1.1e-77 294.3 295 52.2
Phvul.006G149300 Phaseolus vulgaris HOM05D004212 ORTHO05D005128 1.5e-77 293.9 293 52.9
PGSC0003DMG400024265 Solanum tuberosum HOM05D004212 ORTHO05D005128 3.3e-77 292.7 323 52.0
arahy.Tifrunner.gnm1.ann1.PUF7HK Arachis hypogaea HOM05D004212 ORTHO05D005128 5.6e-77 292.0 307 53.7
arahy.Tifrunner.gnm1.ann1.77ZQ01 Arachis hypogaea HOM05D004212 ORTHO05D005128 7.3e-77 291.6 295 51.5
arahy.Tifrunner.gnm1.ann1.MS11WY Arachis hypogaea HOM05D004212 ORTHO05D005128 7.3e-77 291.6 307 54.1
Nn2g11289 Nelumbo nucifera HOM05D004212 ORTHO05D005128 9.6e-77 291.2 304 55.3
Dinv35542 Davidia involucrata HOM05D004212 ORTHO05D005128 1.6e-76 290.4 251 60.6
Migut.J00264 Erythranthe guttata HOM05D004212 ORTHO05D005128 2.8e-76 289.7 300 54.0
SalBow7G2619 Salvia bowleyana HOM05D004212 ORTHO05D005128 4.7e-76 288.9 312 51.6
Sabra16G0103700 Salix brachista HOM05D004212 ORTHO05D005128 8.1e-76 288.1 303 54.1
Ciclev10012365m.g Citrus clementina HOM05D004212 ORTHO05D005128 1.1e-75 287.7 296 54.4
DCAR_028811 Daucus carota HOM05D004212 ORTHO05D005128 2.4e-75 286.6 296 51.4
unitig_62.g23469 Utricularia gibba HOM05D004212 ORTHO05D005128 5.2e-75 285.4 290 52.4
PGR004G1844 Punica granatum HOM05D004212 ORTHO05D005128 2.0e-74 283.5 324 52.5
Lsat_1_v5_gn_8_84101 Lactuca sativa HOM05D004212 ORTHO05D005128 2.6e-74 283.1 304 50.7
Duzib093G0395 Durio zibethinus HOM05D004212 ORTHO05D005128 2.2e-73 280.0 297 52.5
Medtr7g065120 Medicago truncatula HOM05D004212 ORTHO05D005128 2.9e-73 279.6 306 50.3
Glyma.15G165200 Glycine max HOM05D004212 ORTHO05D005128 4.9e-73 278.9 292 51.4
Glyma.09G059100 Glycine max HOM05D004212 ORTHO05D005128 1.1e-72 277.7 293 52.2
Lj1g0008590 Lotus japonicus HOM05D004212 ORTHO05D005128 1.1e-72 277.7 301 52.5
HanXRQChr04g0124481 Helianthus annuus HOM05D004212 ORTHO05D005128 2.4e-72 276.6 301 50.5
vmacro20195 Vaccinium macrocarpon HOM05D004212 ORTHO05D005128 5.4e-72 275.4 301 52.2
VMungo0540G1009 Vigna mungo HOM05D004212 ORTHO05D005128 5.4e-72 275.4 292 51.7
CSS0007767 Camellia sinensis var. sinensis HOM05D004212 ORTHO05D005128 1.2e-71 274.2 301 51.2
ECA236G3305 Erigeron canadensis HOM05D004212 ORTHO05D005128 2.1e-71 273.5 303 48.5
CDE02G2360 Ceratophyllum demersum HOM05D004212 ORTHO05D005128 5.1e-70 268.9 293 50.9
arahy.Tifrunner.gnm1.ann1.SP0BHI Arachis hypogaea HOM05D004212 ORTHO05D005128 1.1e-69 267.7 285 53.3
Thhalv10010577m.g Eutrema salsugineum HOM05D004212 ORTHO05D005128 1.9e-69 266.9 315 52.4
HPP92_005893 Vanilla planifolia HOM05D004212 ORTHO05D005128 1.8e-67 260.4 295 50.8
BcaB02g07758 Brassica carinata HOM05D004212 ORTHO05D005128 3.4e-66 256.1 309 53.4
Rhsim05G0199700 Rhododendron simsii HOM05D004212 ORTHO05D005128 2.9e-65 253.1 300 49.7
ATR1134G026 Amborella trichopoda HOM05D004212 ORTHO05D005128 8.4e-65 251.5 298 50.3
BolC6t37364H Brassica oleracea HOM05D004212 ORTHO05D005128 1.4e-64 250.8 308 52.3
BraA07t29869Z Brassica rapa HOM05D004212 ORTHO05D005128 2.4e-64 250.0 308 52.6
BcaC08g44655 Brassica carinata HOM05D004212 ORTHO05D005128 7.1e-64 248.4 308 51.9
C06p21750 Brassica napus HOM05D004212 ORTHO05D005128 7.1e-64 248.4 308 51.9
A07p21880 Brassica napus HOM05D004212 ORTHO05D005128 9.3e-64 248.1 308 52.3
Sp5g08430 Schrenkiella parvula HOM05D004212 ORTHO05D005128 9.3e-64 248.1 318 50.0
PSO384G5122 Papaver somniferum HOM05D004212 ORTHO05D005128 2.7e-63 246.5 292 50.3
PSO339G0401 Papaver somniferum HOM05D004212 ORTHO05D005128 1.5e-61 240.7 296 48.3
Oeu021128.1 Olea europaea HOM05D004212 ORTHO05D005128 1.9e-61 240.4 392 40.8
FvH4_4g10740 Fragaria vesca HOM05D004212 ORTHO05D005128 4.3e-61 239.2 242 55.0
FvH4_6g12740 Fragaria vesca HOM05D004212 ORTHO05D005128 8.1e-60 235.0 328 45.4
FAN05G0076 Fragaria x ananassa HOM05D004212 ORTHO05D005128 8.1e-60 235.0 328 44.8
SGA_v2.0_scaffold673G53429 Striga asiatica HOM05D004212 ORTHO05D005128 4.0e-59 232.6 230 54.3
FAN14G3630 Fragaria x ananassa HOM05D004212 ORTHO05D005128 5.3e-59 232.3 334 44.0
RcHm_v2.0_Chr3g0464661 Rosa chinensis HOM05D004212 ORTHO05D005128 4.5e-58 229.2 337 43.9
Lj2C86T9 Lonicera japonica HOM05D004212 ORTHO05D005128 7.6e-58 228.4 275 49.1
Aqoxy4G03223 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 1.9e-56 223.8 300 45.7
Mapoly0013s0005 Marchantia polymorpha HOM05D004212 ORTHO05D005128 1.9e-56 223.8 306 45.8
Aqoxy7G01126 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 9.3e-56 221.5 300 45.3
Actinidia29168 Actinidia chinensis HOM05D004212 ORTHO05D005128 5.1e-54 215.7 302 47.0
Os07g0548900 Oryza sativa ssp. japonica HOM05D004212 ORTHO05D005128 2.5e-53 213.4 306 43.8
Zm00001eb323600 Zea mays HOM05D004212 ORTHO05D005128 4.5e-50 202.6 301 43.5
Pp3c12_26190 Physcomitrium patens HOM05D004212 ORTHO05D005128 1.7e-49 200.7 301 42.9
Nn2g13527 Nelumbo nucifera HOM05D004212 ORTHO05D005128 3.2e-48 196.4 244 50.0
SMO115G0073 Selaginella moellendorffii HOM05D004212 ORTHO05D005128 2.2e-44 183.7 287 42.2
CAN.G697.3 Capsicum annuum HOM05D004212 ORTHO05D005128 1.4e-43 181.0 179 52.5
A09p46880 Brassica napus HOM05D004212 ORTHO05D005128 2.0e-42 177.2 294 43.5
BraA09t40156Z Brassica rapa HOM05D004212 ORTHO05D005128 7.6e-42 175.3 307 42.7
CBR_g46706 Chara braunii HOM05D004212 ORTHO05D005128 1.4e-40 171.0 356 38.5
FAN09G1025 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.4e-40 171.0 145 57.2
Carub.0003s2694 Capsella rubella HOM05D004212 ORTHO05D005128 1.9e-40 170.6 166 56.6
BcaB01g00227 Brassica carinata HOM05D004212 ORTHO05D005128 8.8e-38 161.8 248 44.0
AL3G43180 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 7.4e-37 158.7 167 52.7
Prupe.6G304800 Prunus persica HOM05D004212 ORTHO05D005128 1.3e-36 157.9 158 53.8
Lj4g0027540 Lotus japonicus HOM05D004212 ORTHO05D005128 4.8e-36 156.0 282 41.5
AT1G48530 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 1.8e-35 154.1 162 52.5
Hma1.2p1_0097F.1_g048000 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 3.1e-35 153.3 116 69.0
RcHm_v2.0_Chr4g0419261 Rosa chinensis HOM05D004212 ORTHO05D005128 5.3e-35 152.5 223 44.4
AL3G43230 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 4.5e-34 149.4 158 51.9
Lj3C960G5 Lonicera japonica HOM05D004212 ORTHO05D005128 2.2e-33 147.1 116 62.9
MD12G1200000 Malus domestica HOM05D004212 ORTHO05D005128 6.5e-33 145.6 213 43.7
SEGI_10222 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 1.1e-32 144.8 180 47.8
BcaB02g08498 Brassica carinata HOM05D004212 ORTHO05D005128 1.4e-32 144.4 290 37.6
arahy.Tifrunner.gnm1.ann1.MGHR3Z Arachis hypogaea HOM05D004212 ORTHO05D005128 1.8e-30 137.5 115 58.3
MD17G1162600 Malus domestica HOM05D004212 ORTHO05D005128 2.3e-30 137.1 148 50.7
arahy.Tifrunner.gnm1.ann1.U24FMU Arachis hypogaea HOM05D004212 ORTHO05D005128 3.0e-30 136.7 103 64.1
PSO104G0021 Papaver somniferum HOM05D004212 ORTHO05D005128 8.8e-30 135.2 159 46.5
PSO421G0231 Papaver somniferum HOM05D004212 ORTHO05D005128 3.3e-29 133.3 158 47.5
CAN.G697.2 Capsicum annuum HOM05D004212 ORTHO05D005128 1.4e-27 127.9 120 60.0
PSO104G0091 Papaver somniferum HOM05D004212 ORTHO05D005128 2.4e-27 127.1 161 46.0
SEGI_17127 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 2.4e-27 127.1 106 64.2
C08p29190 Brassica napus HOM05D004212 ORTHO05D005128 4.1e-27 126.3 282 39.0
PSO104G0005 Papaver somniferum HOM05D004212 ORTHO05D005128 4.1e-27 126.3 161 46.0
Cfa009861 Carpinus fangiana HOM05D004212 ORTHO05D005128 5.3e-27 125.9 246 38.6
BcaC07g39746 Brassica carinata HOM05D004212 ORTHO05D005128 9.1e-27 125.2 282 38.7
BolC8t50520H Brassica oleracea HOM05D004212 ORTHO05D005128 1.2e-26 124.8 282 38.7
Duzib106G0220 Durio zibethinus HOM05D004212 ORTHO05D005128 5.9e-26 122.5 104 65.4
RcHm_v2.0_Chr4g0416021 Rosa chinensis HOM05D004212 ORTHO05D005128 1.5e-21 107.8 130 47.7
AagrBONN_evm.TU.Sc2ySwM_344.2315 Anthoceros agrestis HOM05D004212 ORTHO05D005128 7.2e-16 89.0 180 36.7
BolC6t39520H Brassica oleracea HOM05D004212 ORTHO05D005128 2.1e-15 87.4 91 48.4
BcaC02g09118 Brassica carinata HOM05D004212 ORTHO05D005128 9.7e-13 78.6 71 59.2
TAR633G2132 Trochodendron aralioides HOM05D004212 ORTHO05D005128 1.4e-11 74.7 265 27.5
BcaC01g05774 Brassica carinata HOM05D004212 ORTHO05D005128 9.1e-11 72.0 56 58.9
Lalb_Chr18g0052541 Lupinus albus HOM05D004212 ORTHO05D005128 9.1e-11 72.0 56 62.5
FAN02G2124 Fragaria x ananassa HOM05D004212 ORTHO05D005128 2.7e-10 70.5 132 38.6
Cre07.g331000 Chlamydomonas reinhardtii HOM05D004212 ORTHO05D005128 1.3e-09 68.2 378 25.9
SGA_v2.0_scaffold96G28918 Striga asiatica HOM05D004212 ORTHO05D005128 2.2e-09 67.4 73 53.4
MCO11G019 Micromonas commoda HOM05D004212 ORTHO05D005128 8.0e-07 58.9 325 27.7
BcaC05g26039 Brassica carinata HOM05D004212 ORTHO05D032610 1.4e-06 58.2 55 50.9
C05p20210 Brassica napus HOM05D004212 ORTHO05D032610 1.4e-06 58.2 55 50.9
BolC5t30714H Brassica oleracea HOM05D004212 ORTHO05D032610 1.4e-06 58.2 55 50.9
CARHR164030 Cardamine hirsuta HOM05D004212 ORTHO05D005128 3.0e-06 57.0 57 52.6


User provided reference genes

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