Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc22g0004100 Simmondsia chinensis HOM05D003783 ORTHO05D004568 1.6e-91 339.3 163 100.0
Sc11g0004390 Simmondsia chinensis HOM05D003783 ORTHO05D004568 1.4e-55 219.9 126 86.5
Medtr0212s0020 Medicago truncatula HOM05D003783 ORTHO05D004568 3.1e-55 218.8 150 74.0
AUR62042333 Chenopodium quinoa HOM05D003783 ORTHO05D004568 4.1e-55 218.4 126 85.7
Ah.10g028070 Amaranthus hybridus HOM05D003783 ORTHO05D004568 5.3e-55 218.0 126 85.7
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 7.0e-55 217.6 126 85.7
Ah.01g011790 Amaranthus hybridus HOM05D003783 ORTHO05D004568 1.5e-54 216.5 126 84.9
Gorai.013G137500 Gossypium raimondii HOM05D003783 ORTHO05D004568 1.5e-54 216.5 126 84.9
Ah.00g237920 Amaranthus hybridus HOM05D003783 ORTHO05D004568 3.5e-54 215.3 123 86.2
HanXRQChr04g0109071 Helianthus annuus HOM05D003783 ORTHO05D004568 7.7e-54 214.2 118 89.0
HanXRQChr08g0236011 Helianthus annuus HOM05D003783 ORTHO05D004568 7.7e-54 214.2 118 89.0
HanXRQChr14g0434351 Helianthus annuus HOM05D003783 ORTHO05D004568 7.7e-54 214.2 118 89.0
HanXRQMTg0579571 Helianthus annuus HOM05D003783 ORTHO05D004568 7.7e-54 214.2 118 89.0
Lsat_1_v5_gn_5_16100 Lactuca sativa HOM05D003783 ORTHO05D004568 7.7e-54 214.2 118 89.0
LjContig00315g0021149 Lotus japonicus HOM05D003783 ORTHO05D004568 2.9e-53 212.2 117 88.0
LjContig00439g0010231 Lotus japonicus HOM05D003783 ORTHO05D004568 2.9e-53 212.2 117 88.0
arahy.Tifrunner.gnm1.ann1.WX3135 Arachis hypogaea HOM05D003783 ORTHO05D004568 3.8e-53 211.8 117 88.0
Dinv06713 Davidia involucrata HOM05D003783 ORTHO05D004568 5.0e-53 211.5 118 87.3
Lalb_Chr00c29g0408271 Lupinus albus HOM05D003783 ORTHO05D004568 8.5e-53 210.7 111 91.9
AL3G44640 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 1.5e-52 209.9 125 84.8
ATMG00830 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 1.5e-52 209.9 125 84.8
BcaC09g49594 Brassica carinata HOM05D003783 ORTHO05D004568 1.5e-52 209.9 125 84.8
BNapus_Darmor_BZH_scaffold_234p00030 Brassica napus HOM05D003783 ORTHO05D004568 1.5e-52 209.9 125 84.8
BraSC177t45753Z Brassica rapa HOM05D003783 ORTHO05D004568 1.5e-52 209.9 125 84.8
BraSC77t46622Z Brassica rapa HOM05D003783 ORTHO05D004568 1.5e-52 209.9 125 84.8
HanXRQChr01g0003471 Helianthus annuus HOM05D003783 ORTHO05D004568 1.5e-52 209.9 118 87.3
SabraMtG0000900 Salix brachista HOM05D003783 ORTHO05D004568 1.5e-52 209.9 118 87.3
DCAR_031805 Daucus carota HOM05D003783 ORTHO05D004568 1.9e-52 209.5 118 87.3
DCAR_032429 Daucus carota HOM05D003783 ORTHO05D004568 1.9e-52 209.5 118 87.3
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 1.9e-52 209.5 113 91.2
BcaC09g49580 Brassica carinata HOM05D003783 ORTHO05D004568 2.5e-52 209.1 122 86.1
Sp3g25620 Schrenkiella parvula HOM05D003783 ORTHO05D004568 2.5e-52 209.1 125 84.8
CARHR283110 Cardamine hirsuta HOM05D003783 ORTHO05D004568 4.2e-52 208.4 125 84.0
MD14G1092300 Malus domestica HOM05D003783 ORTHO05D004568 4.2e-52 208.4 125 84.0
Aa31csc549G20 Aethionema arabicum HOM05D003783 ORTHO05D004568 1.2e-51 206.8 125 84.0
RcHm_v2.0_Chr6g0258021 Rosa chinensis HOM05D003783 ORTHO05D004568 1.2e-51 206.8 120 86.7
RcHm_v2.0_MTg0498851 Rosa chinensis HOM05D003783 ORTHO05D004568 1.2e-51 206.8 120 86.7
HanXRQChr09g0246391 Helianthus annuus HOM05D003783 ORTHO05D004568 2.1e-51 206.1 118 85.6
Psat4g179160 Pisum sativum HOM05D003783 ORTHO05D004568 2.1e-51 206.1 117 85.5
Zm00001eb434740 Zea mays HOM05D003783 ORTHO05D004568 2.1e-51 206.1 125 83.2
Zm00001eb436360 Zea mays HOM05D003783 ORTHO05D004568 2.1e-51 206.1 125 83.2
Zm00001eb437010 Zea mays HOM05D003783 ORTHO05D004568 2.1e-51 206.1 125 83.2
Zm00001eb438050 Zea mays HOM05D003783 ORTHO05D004568 2.1e-51 206.1 125 83.2
Zm00001eb438170 Zea mays HOM05D003783 ORTHO05D004568 2.1e-51 206.1 125 83.2
Zm00001eb438820 Zea mays HOM05D003783 ORTHO05D004568 2.1e-51 206.1 125 83.2
CsaV3_UNG210090 Cucumis sativus L. HOM05D003783 ORTHO05D004568 2.7e-51 205.7 125 81.6
SalBow1G3009 Salvia bowleyana HOM05D003783 ORTHO05D004568 8.0e-51 204.1 118 86.4
DCAR_032038 Daucus carota HOM05D003783 ORTHO05D004568 1.0e-50 203.8 114 87.7
Lsat_1_v5_gn_7_99780 Lactuca sativa HOM05D003783 ORTHO05D004568 2.3e-50 202.6 118 83.9
MBI05_g05347_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 3.0e-50 202.2 125 82.4
Nn1g09973 Nelumbo nucifera HOM05D003783 ORTHO05D004568 3.0e-50 202.2 125 82.4
Nn1g10045 Nelumbo nucifera HOM05D003783 ORTHO05D004568 3.0e-50 202.2 125 82.4
Nn1g10116 Nelumbo nucifera HOM05D003783 ORTHO05D004568 3.0e-50 202.2 125 82.4
RhsimMtG0005400 Rhododendron simsii HOM05D003783 ORTHO05D004568 1.5e-49 199.9 126 81.0
Aqoxy163s002 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 2.6e-49 199.1 125 80.8
CANSAT16G0001 Cannabis sativa HOM05D003783 ORTHO05D004568 2.6e-49 199.1 125 80.8
Nn3g20873 Nelumbo nucifera HOM05D003783 ORTHO05D004568 3.3e-49 198.7 125 80.8
Peaxi162Scf00707g00004 Petunia axillaris HOM05D003783 ORTHO05D004568 5.7e-49 198.0 118 84.7
Peaxi162Scf02040g00001 Petunia axillaris HOM05D003783 ORTHO05D004568 5.7e-49 198.0 118 84.7
PGSC0003DMG400016897 Solanum tuberosum HOM05D003783 ORTHO05D004568 5.7e-49 198.0 118 84.7
SGA_v2.0_scaffold245G44749 Striga asiatica HOM05D003783 ORTHO05D004568 7.4e-49 197.6 113 85.8
SHI54253 Sapria himalayana HOM05D003783 ORTHO05D004568 1.3e-48 196.8 118 79.7
Solyc00g049210.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.7e-48 196.4 118 83.9
Solyc00g500249.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.7e-48 196.4 118 83.9
Solyc00g500348.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.7e-48 196.4 118 83.9
CDE02G3531 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 1.8e-47 193.0 130 74.6
CAN.G497.18 Capsicum annuum HOM05D003783 ORTHO05D004568 2.4e-47 192.6 118 83.1
MBI19_g47479_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 2.4e-47 192.6 125 80.8
Sopen05g012690 Solanum pennellii HOM05D003783 ORTHO05D004568 7.0e-47 191.0 118 83.9
SHI54470 Sapria himalayana HOM05D003783 ORTHO05D004568 4.5e-46 188.3 118 78.0
Thhalv10029166m.g Eutrema salsugineum HOM05D003783 ORTHO05D004568 3.8e-45 185.3 125 77.6
Nitab4.5_0004300g0270 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.7e-43 179.1 101 87.1
CAN.G1576.3 Capsicum annuum HOM05D003783 ORTHO05D004568 8.8e-42 174.1 116 76.7
Eucgr.C03075 Eucalyptus grandis HOM05D003783 ORTHO05D004568 6.3e-40 167.9 89 91.0
Nitab4.5_0000592g0140 Nicotiana tabacum HOM05D003783 ORTHO05D004568 8.3e-40 167.5 104 81.7
SHI36895 Sapria himalayana HOM05D003783 ORTHO05D004568 4.1e-39 165.2 118 71.2
GSVIVG01006218001 Vitis vinifera HOM05D003783 ORTHO05D004568 1.0e-37 160.6 89 88.8
GSVIVG01004964001 Vitis vinifera HOM05D003783 ORTHO05D004568 8.5e-37 157.5 89 87.6
Nitab4.5_0011099g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 5.5e-36 154.8 144 58.3
SHI54813 Sapria himalayana HOM05D003783 ORTHO05D004568 5.5e-36 154.8 95 80.0
Psat7g150720 Pisum sativum HOM05D003783 ORTHO05D004568 7.2e-36 154.5 93 81.7
BraSC48t46252Z Brassica rapa HOM05D003783 ORTHO05D004568 3.6e-35 152.1 125 68.0
TPR.G885 Trifolium pratense HOM05D003783 ORTHO05D004568 5.2e-34 148.3 82 87.8
SEGI_30299 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 2.6e-33 146.0 106 72.6
Nitab4.5_0010936g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 3.1e-31 139.0 116 65.5
CARHR287240 Cardamine hirsuta HOM05D003783 ORTHO05D004568 5.4e-31 138.3 91 76.9
Nitab4.5_0008535g0060 Nicotiana tabacum HOM05D003783 ORTHO05D004568 9.1e-31 137.5 77 84.4
Nitab4.5_0000128g0160 Nicotiana tabacum HOM05D003783 ORTHO05D004568 7.7e-30 134.4 73 89.0
CDE02G1256 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 1.0e-29 134.0 80 82.5
QL02p008127 Quercus lobata HOM05D003783 ORTHO05D004568 2.3e-29 132.9 75 86.7
Nitab4.5_0000172g1380 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.6e-27 126.7 96 69.8
CAN.G1001.41 Capsicum annuum HOM05D003783 ORTHO05D004568 3.6e-27 125.6 99 66.7
Nitab4.5_0002888g0030 Nicotiana tabacum HOM05D003783 ORTHO05D004568 4.7e-27 125.2 72 86.1
AUR62033936 Chenopodium quinoa HOM05D003783 ORTHO05D004568 5.4e-23 111.7 64 85.9
CAN.G124.8 Capsicum annuum HOM05D003783 ORTHO05D004568 2.0e-22 109.8 81 74.1
Solyc11g063620.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.0e-22 109.8 79 70.9
Ah.01g011720 Amaranthus hybridus HOM05D003783 ORTHO05D013694 4.7e-19 98.6 47 95.7
SHI32491 Sapria himalayana HOM05D003783 ORTHO05D004568 4.7e-19 98.6 73 65.8
Solyc02g050290.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.0e-18 97.4 74 70.3
Psat6g195120 Pisum sativum HOM05D003783 ORTHO05D004568 2.3e-18 96.3 58 82.8
Nitab4.5_0005837g0060 Nicotiana tabacum HOM05D000102 ORTHO05D000138 2.0e-14 83.2 48 81.2
C05p22550 Brassica napus HOM05D003783 ORTHO05D004568 5.6e-12 75.1 48 75.0
Actinidia31963 Actinidia chinensis HOM05D000944 ORTHO05D003581 1.2e-11 73.9 53 69.8
Solyc12g035910.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.2e-11 73.9 49 71.4
BolC5t30954H Brassica oleracea HOM05D003783 ORTHO05D004568 1.1e-10 70.9 48 72.9
arahy.Tifrunner.gnm1.ann1.BUQ0M3 Arachis hypogaea HOM05D003783 ORTHO05D004568 1.2e-09 67.4 43 76.7
SHI26671 Sapria himalayana HOM05D003783 ORTHO05D004568 1.2e-09 67.4 61 60.7
Solyc12g035895.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.4e-09 65.9 56 58.9
SEGI_06792 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 7.5e-09 64.7 38 76.3
CAN.G60.11 Capsicum annuum HOM05D001322 ORTHO05D001301 2.2e-08 63.2 44 77.3
SHI11506 Sapria himalayana HOM05D003783 ORTHO05D004568 2.4e-07 59.7 45 62.2
Dinv06615 Davidia involucrata HOM05D003783 ORTHO05D011738 3.2e-07 59.3 31 87.1
Solyc11g063630.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.7e-06 56.2 29 86.2
HanXRQChr11g0334181 Helianthus annuus HOM05D003783 ORTHO05D004568 6.0e-06 55.1 29 86.2
HanXRQChr17g0544011 Helianthus annuus HOM05D003783 ORTHO05D004568 6.0e-06 55.1 29 86.2
Lsat_1_v5_gn_7_67781 Lactuca sativa HOM05D003783 ORTHO05D004568 7.8e-06 54.7 24 100.0


User provided reference genes

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