Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc22g0003840 Simmondsia chinensis HOM05D005804 ORTHO05D006849 1.2e-258 896.0 443 100.0
Hund02443 Selenicereus undatus HOM05D005804 ORTHO05D006849 9.2e-126 454.5 439 55.8
GSVIVG01008547001 Vitis vinifera HOM05D005804 ORTHO05D006849 1.6e-109 400.6 453 51.9
Hma1.2p1_0014F.1_g009390 Hydrangea macrophylla HOM05D005804 ORTHO05D006849 6.0e-109 398.7 426 51.9
Dinv23150 Davidia involucrata HOM05D005804 ORTHO05D006849 1.0e-108 397.9 425 53.2
Ah.02g114880 Amaranthus hybridus HOM05D005804 ORTHO05D006849 6.6e-108 395.2 435 49.9
QL10p002869 Quercus lobata HOM05D005804 ORTHO05D006849 2.0e-104 383.6 426 50.2
Cfa018793 Carpinus fangiana HOM05D005804 ORTHO05D006849 1.3e-103 380.9 442 48.4
TAR629G0711 Trochodendron aralioides HOM05D005804 ORTHO05D006849 2.2e-103 380.2 431 51.5
Thecc.03G129500 Theobroma cacao HOM05D005804 ORTHO05D006849 6.4e-103 378.6 431 49.4
CiPaw.11G006800 Carya illinoinensis HOM05D005804 ORTHO05D006849 1.4e-102 377.5 437 48.3
Haze_07141 Corylus avellana HOM05D005804 ORTHO05D006849 3.2e-102 376.3 448 47.1
MD14G1156600 Malus domestica HOM05D005804 ORTHO05D006849 7.1e-102 375.2 433 49.7
AUR62029607 Chenopodium quinoa HOM05D005804 ORTHO05D006849 1.2e-101 374.4 412 50.7
Gorai.001G058800 Gossypium raimondii HOM05D005804 ORTHO05D006849 1.6e-101 374.0 435 48.7
COL.COLO4_28132 Corchorus olitorius HOM05D005804 ORTHO05D006849 7.8e-101 371.7 425 47.3
Duzib205G0351 Durio zibethinus HOM05D005804 ORTHO05D006849 1.3e-100 370.9 437 48.5
EL10Ac5g11407 Beta vulgaris HOM05D005804 ORTHO05D006849 8.7e-100 368.2 537 42.5
Prupe.5G150700 Prunus persica HOM05D005804 ORTHO05D006849 8.7e-100 368.2 434 48.4
Rhsim12G0175100 Rhododendron simsii HOM05D005804 ORTHO05D006849 1.1e-99 367.9 466 47.2
TAR371G0929 Trochodendron aralioides HOM05D005804 ORTHO05D006849 1.5e-99 367.5 431 50.8
Lalb_Chr11g0069551 Lupinus albus HOM05D005804 ORTHO05D006849 4.3e-99 365.9 432 49.1
TWI23G1188 Tripterygium wilfordii HOM05D005804 ORTHO05D006849 6.2e-98 362.1 447 45.6
FvH4_5g08360 Fragaria vesca HOM05D005804 ORTHO05D006849 3.1e-97 359.8 435 47.8
Aqoxy5G03360 Aquilegia oxysepala HOM05D005804 ORTHO05D006849 4.0e-97 359.4 439 46.7
FAN04G2797 Fragaria x ananassa HOM05D005804 ORTHO05D006849 2.0e-96 357.1 431 47.6
Medtr3g099220 Medicago truncatula HOM05D005804 ORTHO05D006849 2.6e-96 356.7 418 48.8
Psat5g051400 Pisum sativum HOM05D005804 ORTHO05D006849 5.8e-96 355.5 428 47.9
Ciclev10031832m.g Citrus clementina HOM05D005804 ORTHO05D006849 9.9e-96 354.8 428 48.1
arahy.Tifrunner.gnm1.ann1.489AYV Arachis hypogaea HOM05D005804 ORTHO05D006849 2.2e-95 353.6 434 47.5
arahy.Tifrunner.gnm1.ann1.Y2QIS7 Arachis hypogaea HOM05D005804 ORTHO05D006849 2.2e-95 353.6 418 47.8
FAN13G2030 Fragaria x ananassa HOM05D005804 ORTHO05D006849 2.2e-95 353.6 431 47.6
Medtr2g045240 Medicago truncatula HOM05D005804 ORTHO05D006849 8.4e-95 351.7 417 48.4
Medtr2g045245 Medicago truncatula HOM05D005804 ORTHO05D006849 8.4e-95 351.7 417 48.4
TPR.G14211 Trifolium pratense HOM05D005804 ORTHO05D006849 8.4e-95 351.7 437 47.1
FAN08G1998 Fragaria x ananassa HOM05D005804 ORTHO05D006849 1.9e-94 350.5 425 47.3
Cpa.g.sc13.112 Carica papaya HOM05D005804 ORTHO05D006849 2.4e-94 350.1 421 46.3
FAN18G4115 Fragaria x ananassa HOM05D005804 ORTHO05D006849 2.4e-94 350.1 424 47.6
Ca_16047_v3 Cicer arietinum L. HOM05D005804 ORTHO05D006849 4.2e-94 349.4 427 48.2
Lj1g0008882 Lotus japonicus HOM05D005804 ORTHO05D006849 1.2e-93 347.8 433 47.8
PSO478G1623 Papaver somniferum HOM05D005804 ORTHO05D006849 5.1e-92 342.4 442 45.2
THA.LOC104825017 Tarenaya hassleriana HOM05D005804 ORTHO05D006849 5.1e-92 342.4 444 45.0
arahy.Tifrunner.gnm1.ann1.PR501J Arachis hypogaea HOM05D005804 ORTHO05D006849 1.9e-91 340.5 430 46.0
CsaV3_1G009670 Cucumis sativus L. HOM05D005804 ORTHO05D006849 9.6e-91 338.2 446 45.3
Oeu058729.2 Olea europaea HOM05D005804 ORTHO05D006849 1.3e-90 337.8 469 43.3
Cc04_g08810 Coffea canephora HOM05D005804 ORTHO05D006849 6.2e-90 335.5 439 46.2
HanXRQChr13g0408711 Helianthus annuus HOM05D005804 ORTHO05D006849 1.2e-88 331.3 425 47.1
DCAR_007491 Daucus carota HOM05D005804 ORTHO05D006849 5.8e-88 328.9 426 45.8
arahy.Tifrunner.gnm1.ann1.I073XK Arachis hypogaea HOM05D005804 ORTHO05D006849 7.6e-88 328.6 420 46.2
Peaxi162Scf00171g00421 Petunia axillaris HOM05D005804 ORTHO05D006849 8.4e-87 325.1 427 45.4
Nitab4.5_0010950g0010 Nicotiana tabacum HOM05D005804 ORTHO05D006849 2.4e-86 323.6 431 43.4
Lsat_1_v5_gn_1_33221 Lactuca sativa HOM05D005804 ORTHO05D006849 3.2e-86 323.2 433 44.6
AT4G24900 Arabidopsis thaliana HOM05D005804 ORTHO05D006849 7.1e-86 322.0 433 44.8
AL7G28300 Arabidopsis lyrata HOM05D005804 ORTHO05D006849 9.3e-86 321.6 434 44.5
ClCG03G003790 Citrullus lanatus HOM05D005804 ORTHO05D006849 1.6e-85 320.9 459 41.8
SalBow8G2935 Salvia bowleyana HOM05D005804 ORTHO05D006849 2.1e-85 320.5 438 43.6
Solyc03g098330.2 Solanum lycopersicum HOM05D005804 ORTHO05D006849 6.0e-85 318.9 421 44.2
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 1.3e-84 317.8 421 43.0
Migut.O00254 Erythranthe guttata HOM05D005804 ORTHO05D006849 1.8e-84 317.4 421 42.8
Atru.chr12.1219 Acer truncatum HOM05D005804 ORTHO05D006849 2.3e-84 317.0 440 42.5
CANSAT80G2783 Cannabis sativa HOM05D005804 ORTHO05D006849 3.0e-84 316.6 401 45.1
Sopen03g029080 Solanum pennellii HOM05D005804 ORTHO05D006849 3.0e-84 316.6 422 43.8
MBI11_g05331_MAGBIO Magnolia biondii HOM05D005804 ORTHO05D006849 8.7e-84 315.1 416 47.1
Sp7g22880 Schrenkiella parvula HOM05D005804 ORTHO05D006849 1.5e-83 314.3 428 43.7
Atru.chr6.1796 Acer truncatum HOM05D005804 ORTHO05D006849 3.1e-81 306.6 432 41.9
PGSC0003DMG400025629 Solanum tuberosum HOM05D005804 ORTHO05D006849 3.1e-81 306.6 417 42.9
Lj9A479T55 Lonicera japonica HOM05D005804 ORTHO05D006849 1.2e-80 304.7 403 46.2
MD06G1141400 Malus domestica HOM05D005804 ORTHO05D006849 2.6e-80 303.5 397 44.6
SGA_v2.0_scaffold164G38120 Striga asiatica HOM05D005804 ORTHO05D006849 7.6e-80 302.0 478 40.6
MELO3C002363.2 Cucumis melo HOM05D005804 ORTHO05D006849 2.9e-79 300.1 431 43.4
VMungo1309G0122 Vigna mungo HOM05D005804 ORTHO05D006849 2.9e-79 300.1 427 41.7
Aa31LG7G10880 Aethionema arabicum HOM05D005804 ORTHO05D006849 1.4e-78 297.7 438 42.0
Thhalv10025155m.g Eutrema salsugineum HOM05D005804 ORTHO05D006849 1.8e-76 290.8 422 42.7
SHI10578 Sapria himalayana HOM05D005804 ORTHO05D006849 6.7e-76 288.9 436 40.1
BcaNung06008 Brassica carinata HOM05D005804 ORTHO05D006849 1.3e-74 284.6 447 40.5
BraA01t01555Z Brassica rapa HOM05D005804 ORTHO05D006849 1.8e-73 280.8 442 39.8
A01p16190 Brassica napus HOM05D005804 ORTHO05D006849 4.1e-73 279.6 442 39.1
HPP92_013611 Vanilla planifolia HOM05D005804 ORTHO05D006849 2.0e-72 277.3 427 38.4
BolC1t01947H Brassica oleracea HOM05D005804 ORTHO05D006849 1.0e-71 275.0 452 39.6
Glyma.06G170000 Glycine max HOM05D005804 ORTHO05D006849 1.0e-71 275.0 418 41.1
BcaC09g52237 Brassica carinata HOM05D005804 ORTHO05D006849 2.9e-71 273.5 452 39.2
C01p20180 Brassica napus HOM05D005804 ORTHO05D006849 2.5e-70 270.4 450 38.9
Sed0001636 Sechium edule HOM05D005804 ORTHO05D006849 2.9e-63 246.9 442 38.0
Potri.012G098000 Populus trichocarpa HOM05D005804 ORTHO05D006849 1.2e-61 241.5 253 48.6
Zm00001eb102430 Zea mays HOM05D005804 ORTHO05D006849 2.3e-60 237.3 445 35.5
unitig_26.g9610 Utricularia gibba HOM05D005804 ORTHO05D006849 4.3e-59 233.0 441 37.0
Actinidia08874 Actinidia chinensis HOM05D005804 ORTHO05D006849 8.2e-58 228.8 266 48.9
AUR62034829 Chenopodium quinoa HOM05D005804 ORTHO05D006849 1.1e-57 228.4 216 55.6
AUR62034830 Chenopodium quinoa HOM05D005804 ORTHO05D006849 1.1e-57 228.4 216 55.6
CSS0001147 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 1.4e-57 228.0 224 54.0
RcHm_v2.0_Chr7g0190091 Rosa chinensis HOM05D005804 ORTHO05D006849 5.3e-57 226.1 219 53.4
Manes.14G051101 Manihot esculenta HOM05D005804 ORTHO05D006849 3.8e-55 219.9 228 50.0
Eucgr.K02724 Eucalyptus grandis HOM05D005804 ORTHO05D006849 2.3e-52 210.7 318 42.5
Nitab4.5_0001180g0250 Nicotiana tabacum HOM05D005804 ORTHO05D006849 2.3e-52 210.7 323 41.2
SEGI_29979 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 1.4e-49 201.4 442 33.7
Gohir.A07G051132 Gossypium hirsutum HOM05D005804 ORTHO05D006849 5.3e-49 199.5 181 51.9
ECA247G1629 Erigeron canadensis HOM05D005804 ORTHO05D006849 2.0e-48 197.6 320 42.5
Gohir.D07G055532 Gossypium hirsutum HOM05D005804 ORTHO05D006849 2.9e-47 193.7 181 51.4
AagrBONN_evm.TU.Sc2ySwM_362.247 Anthoceros agrestis HOM05D005804 ORTHO05D006849 1.1e-43 181.8 435 31.5
Carub.0007s1617 Capsella rubella HOM05D005804 ORTHO05D006849 2.2e-42 177.6 170 51.8
Dinv11177 Davidia involucrata HOM05D005804 ORTHO05D006849 1.7e-39 167.9 263 44.5
Os09g0506900 Oryza sativa ssp. japonica HOM05D005804 ORTHO05D006849 1.7e-39 167.9 213 44.6
CSS0012660 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 5.0e-39 166.4 156 59.0
Phvul.009G166301 Phaseolus vulgaris HOM05D005804 ORTHO05D006849 5.0e-39 166.4 148 52.7
Lalb_Chr08g0237201 Lupinus albus HOM05D005804 ORTHO05D006849 5.5e-38 162.9 158 56.3
ATR0178G019 Amborella trichopoda HOM05D005804 ORTHO05D006849 2.7e-37 160.6 130 58.5
Gohir.D07G055466 Gossypium hirsutum HOM05D005804 ORTHO05D006849 3.6e-37 160.2 158 55.7
Gohir.A07G051066 Gossypium hirsutum HOM05D005804 ORTHO05D006849 4.7e-37 159.8 158 55.7
RcHm_v2.0_Chr7g0190081 Rosa chinensis HOM05D005804 ORTHO05D006849 6.1e-37 159.5 189 49.2
Manes.14G051001 Manihot esculenta HOM05D005804 ORTHO05D006849 1.8e-36 157.9 158 55.7
Medtr2g045235 Medicago truncatula HOM05D005804 ORTHO05D006849 1.8e-36 157.9 167 53.3
Lalb_Chr08g0237181 Lupinus albus HOM05D005804 ORTHO05D006849 2.6e-35 154.1 125 58.4
SMO133G0032 Selaginella moellendorffii HOM05D005804 ORTHO05D006849 9.8e-35 152.1 419 31.3
Pp3c6_21480 Physcomitrium patens HOM05D005804 ORTHO05D006849 1.7e-34 151.4 488 27.7
CDE05G3468 Ceratophyllum demersum HOM05D005804 ORTHO05D006849 1.1e-33 148.7 304 36.5
CARHR232300 Cardamine hirsuta HOM05D005804 ORTHO05D006849 1.3e-31 141.7 164 47.0
SGA_v2.0_scaffold110G31174 Striga asiatica HOM05D052586 ORTHO05D006849 1.1e-30 138.7 113 54.0
Carub.0007s1616 Capsella rubella HOM05D005804 ORTHO05D006849 1.2e-29 135.2 162 49.4
vmacro16720 Vaccinium macrocarpon HOM05D005804 ORTHO05D006849 1.2e-29 135.2 144 53.5
vmacro16719 Vaccinium macrocarpon HOM05D005804 ORTHO05D006849 2.7e-29 134.0 166 46.4
ATR0178G002 Amborella trichopoda HOM05D005804 ORTHO05D006849 1.1e-25 122.1 281 35.9
Dinv11175 Davidia involucrata HOM05D005804 ORTHO05D006849 1.7e-23 114.8 116 53.4
SEGI_03962 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 5.0e-23 113.2 344 32.3
SEGI_07598 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 1.9e-22 111.3 132 37.9
Mapoly0096s0044 Marchantia polymorpha HOM05D005804 ORTHO05D006849 7.2e-22 109.4 127 39.4
Oeu016044.4 Olea europaea HOM05D005804 ORTHO05D006849 1.2e-21 108.6 130 43.8
Zm00001eb317740 Zea mays HOM05D005804 ORTHO05D006849 6.8e-20 102.8 119 49.6
Mapoly0096s0043 Marchantia polymorpha HOM05D005804 ORTHO05D006849 1.7e-18 98.2 140 42.1
Potri.015G096700 Populus trichocarpa HOM05D005804 ORTHO05D006849 1.7e-18 98.2 240 32.1
SalBow2G1912 Salvia bowleyana HOM05D000011 ORTHO05D000018 1.1e-14 85.5 90 50.0
CSS0025658 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 1.4e-12 78.6 154 37.0
CBR_g12751 Chara braunii HOM05D005804 ORTHO05D006849 1.2e-11 75.5 165 30.9
CiPaw.12G043400 Carya illinoinensis HOM05D005804 ORTHO05D006849 1.3e-07 62.0 89 43.8
Sabra15G0117400 Salix brachista HOM05D005804 ORTHO05D006849 3.9e-07 60.5 106 36.8


User provided reference genes

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