Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc22g0003810 Simmondsia chinensis HOM05D005222 ORTHO05D006230 1.6e-36 155.6 79 100.0
Sc04g0000390 Simmondsia chinensis HOM05D005222 ORTHO05D006230 1.9e-34 148.7 79 94.9
Hund02474 Selenicereus undatus HOM05D005222 ORTHO05D006230 1.5e-31 139.0 79 87.3
HanXRQChr09g0273701 Helianthus annuus HOM05D005222 ORTHO05D006230 4.4e-31 137.5 79 83.5
EL10Ac5g11344 Beta vulgaris HOM05D005222 ORTHO05D006230 7.6e-31 136.7 79 84.8
CAN.G65.111 Capsicum annuum HOM05D005222 ORTHO05D006230 2.2e-30 135.2 79 81.0
ECA232G5061 Erigeron canadensis HOM05D005222 ORTHO05D006230 2.2e-30 135.2 79 81.0
PGR083G1056 Punica granatum HOM05D005222 ORTHO05D006230 2.2e-30 135.2 78 82.1
Eucgr.B00077 Eucalyptus grandis HOM05D005222 ORTHO05D006230 3.8e-30 134.4 79 81.0
Peaxi162Scf01064g00238 Petunia axillaris HOM05D005222 ORTHO05D006230 4.9e-30 134.0 79 79.7
DCAR_016362 Daucus carota HOM05D005222 ORTHO05D006230 6.4e-30 133.7 79 78.5
MD06G1135800 Malus domestica HOM05D005222 ORTHO05D006230 6.4e-30 133.7 79 79.7
Lsat_1_v5_gn_4_83361 Lactuca sativa HOM05D005222 ORTHO05D006230 8.4e-30 133.3 79 78.5
FAN13G0479 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.4e-29 132.5 79 78.5
SalBow5G1462 Salvia bowleyana HOM05D005222 ORTHO05D006230 1.4e-29 132.5 75 81.3
MD14G1151000 Malus domestica HOM05D005222 ORTHO05D006230 1.9e-29 132.1 79 78.5
Solyc06g072600.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 1.9e-29 132.1 79 78.5
Sopen06g028950 Solanum pennellii HOM05D005222 ORTHO05D006230 1.9e-29 132.1 79 78.5
FAN08G1832 Fragaria x ananassa HOM05D005222 ORTHO05D006230 2.4e-29 131.7 79 77.2
Gohir.A12G192500 Gossypium hirsutum HOM05D005222 ORTHO05D006230 2.4e-29 131.7 79 78.5
Aa31LG3G7230 Aethionema arabicum HOM05D005222 ORTHO05D006230 3.2e-29 131.3 79 81.0
CsaV3_1G000290 Cucumis sativus L. HOM05D005222 ORTHO05D006230 4.1e-29 131.0 76 80.3
Nn3g16353 Nelumbo nucifera HOM05D005222 ORTHO05D006230 4.1e-29 131.0 79 79.7
RcHm_v2.0_Chr7g0189291 Rosa chinensis HOM05D005222 ORTHO05D006230 5.4e-29 130.6 79 78.5
CDE06G2816 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 7.1e-29 130.2 79 78.5
ClCG06G018150 Citrullus lanatus HOM05D005222 ORTHO05D006230 7.1e-29 130.2 77 77.9
Gohir.D12G194600 Gossypium hirsutum HOM05D005222 ORTHO05D006230 7.1e-29 130.2 79 77.2
TWI23G0048 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 9.2e-29 129.8 79 78.5
TWI39G0019 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 9.2e-29 129.8 79 78.5
Atru.chr6.1879 Acer truncatum HOM05D005222 ORTHO05D006230 1.2e-28 129.4 76 80.3
Dinv23190 Davidia involucrata HOM05D005222 ORTHO05D006230 1.2e-28 129.4 79 78.5
Potri.015G102000 Populus trichocarpa HOM05D005222 ORTHO05D006230 1.2e-28 129.4 79 78.5
Sabra15G0122200 Salix brachista HOM05D005222 ORTHO05D006230 1.2e-28 129.4 79 78.5
CDE02G1328 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 1.6e-28 129.0 79 78.5
FAN04G2766 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.6e-28 129.0 79 75.9
Potri.012G103400 Populus trichocarpa HOM05D005222 ORTHO05D006230 1.6e-28 129.0 79 78.5
Prupe.5G146200 Prunus persica HOM05D005222 ORTHO05D006230 1.6e-28 129.0 79 75.9
THA.LOC104811566 Tarenaya hassleriana HOM05D005222 ORTHO05D006230 1.6e-28 129.0 79 78.5
Ciclev10033230m.g Citrus clementina HOM05D005222 ORTHO05D006230 2.1e-28 128.6 79 77.2
FvH4_5g08990 Fragaria vesca HOM05D005222 ORTHO05D006230 2.1e-28 128.6 79 77.2
Lalb_Chr08g0237411 Lupinus albus HOM05D005222 ORTHO05D006230 2.1e-28 128.6 79 77.2
Manes.06G123800 Manihot esculenta HOM05D005222 ORTHO05D006230 2.1e-28 128.6 79 77.2
MBI07_g24748_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 2.7e-28 128.3 79 78.5
AUR62029544 Chenopodium quinoa HOM05D005222 ORTHO05D006230 3.5e-28 127.9 75 81.3
AUR62034814 Chenopodium quinoa HOM05D005222 ORTHO05D006230 3.5e-28 127.9 75 81.3
Migut.D01295 Erythranthe guttata HOM05D005222 ORTHO05D006230 3.5e-28 127.9 75 77.3
Glyma.06G166600 Glycine max HOM05D005222 ORTHO05D006230 4.6e-28 127.5 79 79.7
Nitab4.5_0001464g0100 Nicotiana tabacum HOM05D005222 ORTHO05D006230 4.6e-28 127.5 79 75.9
Actinidia25544 Actinidia chinensis HOM05D005222 ORTHO05D006230 6.0e-28 127.1 77 76.6
CAN.G758.13 Capsicum annuum HOM05D005222 ORTHO05D006230 6.0e-28 127.1 79 77.2
Dinv11207 Davidia involucrata HOM05D005222 ORTHO05D006230 7.8e-28 126.7 79 75.9
Rhsim08G0194200 Rhododendron simsii HOM05D005222 ORTHO05D006230 7.8e-28 126.7 77 76.6
unitig_0.g1255 Utricularia gibba HOM05D005222 ORTHO05D006230 7.8e-28 126.7 75 80.0
Ca_16071_v3 Cicer arietinum L. HOM05D005222 ORTHO05D006230 1.0e-27 126.3 79 77.2
Peaxi162Scf00516g00032 Petunia axillaris HOM05D005222 ORTHO05D006230 1.7e-27 125.6 80 77.5
PGSC0003DMG400004338 Solanum tuberosum HOM05D005222 ORTHO05D006230 1.7e-27 125.6 80 78.8
CANSAT80G0210 Cannabis sativa HOM05D005222 ORTHO05D006230 3.0e-27 124.8 77 72.7
Glyma.04G198900 Glycine max HOM05D005222 ORTHO05D006230 3.0e-27 124.8 79 77.2
Hma1.2p1_0168F.1_g074260 Hydrangea macrophylla HOM05D005222 ORTHO05D006230 3.0e-27 124.8 79 73.4
Rhsim12G0178200 Rhododendron simsii HOM05D005222 ORTHO05D006230 3.0e-27 124.8 77 77.9
GSVIVG01008600001 Vitis vinifera HOM05D005222 ORTHO05D006230 3.0e-27 124.8 79 77.2
Thecc.03G136000 Theobroma cacao HOM05D005222 ORTHO05D006230 3.9e-27 124.4 79 78.5
Duzib205G1725 Durio zibethinus HOM05D005222 ORTHO05D006230 6.6e-27 123.6 79 73.4
FAN18G1799 Fragaria x ananassa HOM05D005222 ORTHO05D006230 6.6e-27 123.6 86 72.1
Phvul.009G163100 Phaseolus vulgaris HOM05D005222 ORTHO05D006230 6.6e-27 123.6 79 75.9
Manes.14G047400 Manihot esculenta HOM05D005222 ORTHO05D006230 8.7e-27 123.2 79 73.4
PSO063G7191 Papaver somniferum HOM05D005222 ORTHO05D006230 1.1e-26 122.9 74 78.4
PSO782G1904 Papaver somniferum HOM05D005222 ORTHO05D006230 1.1e-26 122.9 74 78.4
Lj1g0004473 Lotus japonicus HOM05D005222 ORTHO05D006230 1.5e-26 122.5 79 73.4
Sopen03g028390 Solanum pennellii HOM05D005222 ORTHO05D006230 1.5e-26 122.5 80 76.2
PGSC0003DMG400027040 Solanum tuberosum HOM05D005222 ORTHO05D006230 1.9e-26 122.1 101 63.4
TAR374G1676 Trochodendron aralioides HOM05D005222 ORTHO05D006230 1.9e-26 122.1 79 73.4
Carub.0008s1080 Capsella rubella HOM05D005222 ORTHO05D006230 2.5e-26 121.7 76 73.7
GSVIVG01033034001 Vitis vinifera HOM05D005222 ORTHO05D006230 2.5e-26 121.7 79 73.4
Medtr3g098820 Medicago truncatula HOM05D005222 ORTHO05D006230 3.3e-26 121.3 79 72.2
Nitab4.5_0011312g0030 Nicotiana tabacum HOM05D005222 ORTHO05D006230 3.3e-26 121.3 79 70.9
Cfa018742 Carpinus fangiana HOM05D005222 ORTHO05D006230 5.6e-26 120.6 79 73.4
Duzib084G0042 Durio zibethinus HOM05D005222 ORTHO05D006230 5.6e-26 120.6 79 77.2
Sp6g12920 Schrenkiella parvula HOM05D005222 ORTHO05D006230 7.3e-26 120.2 76 76.3
Cc04_g09830 Coffea canephora HOM05D005222 ORTHO05D006230 9.6e-26 119.8 79 70.9
Haze_07194 Corylus avellana HOM05D005222 ORTHO05D006230 9.6e-26 119.8 79 73.4
CiPaw.11G003300 Carya illinoinensis HOM05D005222 ORTHO05D006230 1.6e-25 119.0 79 72.2
CARHR257460 Cardamine hirsuta HOM05D005222 ORTHO05D006230 2.1e-25 118.6 76 76.3
AT5G50810 Arabidopsis thaliana HOM05D005222 ORTHO05D006230 3.6e-25 117.9 76 73.7
ATR0582G313 Amborella trichopoda HOM05D005222 ORTHO05D006230 4.7e-25 117.5 77 71.4
CARHR232420 Cardamine hirsuta HOM05D005222 ORTHO05D006230 6.2e-25 117.1 78 71.8
Solyc03g097640.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 6.2e-25 117.1 76 75.0
Lj4g0026334 Lotus japonicus HOM05D005222 ORTHO05D006230 8.1e-25 116.7 79 69.6
TPR.G21582 Trifolium pratense HOM05D005222 ORTHO05D006230 8.1e-25 116.7 79 70.9
Sc07g0003580 Simmondsia chinensis HOM05D005222 ORTHO05D006230 1.4e-24 115.9 79 68.4
SEGI_36916 Sequoiadendron giganteum HOM05D005222 ORTHO05D006230 3.1e-24 114.8 77 68.8
arahy.Tifrunner.gnm1.ann1.122S7D Arachis hypogaea HOM05D005222 ORTHO05D006230 6.9e-24 113.6 79 67.1
arahy.Tifrunner.gnm1.ann1.5QWD0G Arachis hypogaea HOM05D005222 ORTHO05D006230 9.0e-24 113.2 79 67.1
CSS0012412 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 9.0e-24 113.2 61 85.2
CSS0000670 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 2.6e-23 111.7 61 83.6
Nitab4.5_0000033g0050 Nicotiana tabacum HOM05D005222 ORTHO05D006230 7.6e-23 110.2 82 67.1
QL05p049336 Quercus lobata HOM05D005222 ORTHO05D006230 7.6e-23 110.2 78 67.9
QL10p001732 Quercus lobata HOM05D005222 ORTHO05D006230 7.6e-23 110.2 78 67.9
TAR629G0657 Trochodendron aralioides HOM05D005222 ORTHO05D006230 7.6e-23 110.2 63 79.4
Pp3c22_9040 Physcomitrium patens HOM05D005222 ORTHO05D006230 9.9e-23 109.8 74 68.9
vmacro16739 Vaccinium macrocarpon HOM05D005222 ORTHO05D006230 9.9e-23 109.8 66 78.8
Thhalv10015178m.g Eutrema salsugineum HOM05D005222 ORTHO05D006230 1.3e-22 109.4 76 69.7
MELO3C026182.2 Cucumis melo HOM05D005222 ORTHO05D006230 1.7e-22 109.0 60 83.3
Sabra12G0075900 Salix brachista HOM05D005222 ORTHO05D006230 1.7e-22 109.0 115 53.0
Gorai.008G209300 Gossypium raimondii HOM05D005222 ORTHO05D006230 2.9e-22 108.2 65 75.4
A03p16580 Brassica napus HOM05D005222 ORTHO05D006230 4.9e-22 107.5 75 69.3
C03p19510 Brassica napus HOM05D005222 ORTHO05D006230 4.9e-22 107.5 75 69.3
BolC3t14332H Brassica oleracea HOM05D005222 ORTHO05D006230 4.9e-22 107.5 75 69.3
BraA03t10945Z Brassica rapa HOM05D005222 ORTHO05D006230 4.9e-22 107.5 75 69.3
Mapoly0022s0111 Marchantia polymorpha HOM05D005222 ORTHO05D006230 4.9e-22 107.5 78 65.4
CSS0034357 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 6.4e-22 107.1 67 71.6
ClCG04G004850 Citrullus lanatus HOM05D005222 ORTHO05D006230 6.4e-22 107.1 59 83.1
Os08g0535600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 8.4e-22 106.7 69 69.6
ATR1096G067 Amborella trichopoda HOM05D005222 ORTHO05D006230 1.1e-21 106.3 76 64.5
Glyma.05G202400 Glycine max HOM05D005222 ORTHO05D006230 1.9e-21 105.5 79 64.6
Zm00001eb036900 Zea mays HOM05D005222 ORTHO05D006230 1.9e-21 105.5 70 65.7
BcaC09g50823 Brassica carinata HOM05D005222 ORTHO05D006230 4.2e-21 104.4 79 63.3
C01p20320 Brassica napus HOM05D005222 ORTHO05D006230 4.2e-21 104.4 79 63.3
BolC1t01961H Brassica oleracea HOM05D005222 ORTHO05D006230 4.2e-21 104.4 79 63.3
A01p16290 Brassica napus HOM05D005222 ORTHO05D006230 5.4e-21 104.0 79 63.3
MBI13_g38964_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 5.4e-21 104.0 79 62.0
VMungo0464G1435 Vigna mungo HOM05D005222 ORTHO05D006230 5.4e-21 104.0 57 84.2
COL.COLO4_16662 Corchorus olitorius HOM05D005222 ORTHO05D006230 7.1e-21 103.6 57 86.0
BcaNung03992 Brassica carinata HOM05D005222 ORTHO05D006230 9.3e-21 103.2 79 62.0
BraA01t01568Z Brassica rapa HOM05D005222 ORTHO05D006230 1.2e-20 102.8 79 62.0
Aqoxy3G01691 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 2.1e-20 102.1 73 64.4
Os12g0128600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 4.6e-20 100.9 76 61.8
Os11g0131700 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 1.0e-19 99.8 76 60.5
Zm00001eb175490 Zea mays HOM05D005222 ORTHO05D006230 2.3e-19 98.6 69 65.2
AL8G24980 Arabidopsis lyrata HOM05D005222 ORTHO05D006230 5.1e-19 97.4 54 79.6
Zm00001eb163550 Zea mays HOM05D005222 ORTHO05D006230 6.6e-19 97.1 74 59.5
Psat5g053520 Pisum sativum HOM05D001135 ORTHO05D006230 1.5e-18 95.9 53 77.4
CAN.G101.22 Capsicum annuum HOM05D005222 ORTHO05D006230 2.5e-18 95.1 55 78.2
Nn7g37129 Nelumbo nucifera HOM05D005222 ORTHO05D006230 4.3e-18 94.4 67 62.7
Pp3c18_15660 Physcomitrium patens HOM05D005222 ORTHO05D006230 4.3e-18 94.4 64 67.2
SMO356G0192 Selaginella moellendorffii HOM05D005222 ORTHO05D006230 9.6e-18 93.2 59 67.8
BcaC08g43896 Brassica carinata HOM05D005222 ORTHO05D006230 2.8e-17 91.7 65 64.6
C06p12810 Brassica napus HOM05D005222 ORTHO05D006230 3.6e-17 91.3 65 64.6
Aqoxy5G03239 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 6.9e-16 87.0 81 51.9
HPP92_001283 Vanilla planifolia HOM05D005222 ORTHO05D006230 1.4e-13 79.3 59 59.3
FvH4_5g07110 Fragaria vesca HOM05D005222 ORTHO05D006230 6.0e-12 73.9 64 54.7
AagrBONN_evm.TU.Sc2ySwM_362.856 Anthoceros agrestis HOM05D005222 ORTHO05D006230 7.4e-10 67.0 51 64.7
FAN08G2230 Fragaria x ananassa HOM05D005222 ORTHO05D006230 9.6e-10 66.6 70 45.7
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 2.1e-09 65.5 79 40.5
MCO14G257 Micromonas commoda HOM05D005222 ORTHO05D006230 8.1e-09 63.5 65 46.2
FAN18G4143 Fragaria x ananassa HOM05D005222 ORTHO05D006230 4.9e-06 54.3 79 39.2


User provided reference genes

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