Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc22g0003350 Simmondsia chinensis HOM05D004850 ORTHO05D005971 9.2e-53 209.9 103 100.0
Sc02g0006900 Simmondsia chinensis HOM05D004850 ORTHO05D005971 9.5e-42 173.3 90 93.3
Sc01g0007470 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.2e-41 172.9 90 92.2
ECA233G2661 Erigeron canadensis HOM05D004850 ORTHO05D005971 1.2e-39 166.4 88 89.8
unitig_21.g20382 Utricularia gibba HOM05D004850 ORTHO05D005971 1.2e-39 166.4 88 90.9
Potri.001G143200 Populus trichocarpa HOM05D004850 ORTHO05D005971 4.4e-39 164.5 88 88.6
Sabra01G0111700 Salix brachista HOM05D004850 ORTHO05D005971 5.8e-39 164.1 88 88.6
CANSAT21G2632 Cannabis sativa HOM05D004850 ORTHO05D005971 7.5e-39 163.7 88 87.5
COL.COLO4_17049 Corchorus olitorius HOM05D004850 ORTHO05D005971 7.5e-39 163.7 90 85.6
Glyma.11G043300 Glycine max HOM05D004850 ORTHO05D005971 7.5e-39 163.7 90 84.4
Atru.chr6.1718 Acer truncatum HOM05D004850 ORTHO05D005971 9.8e-39 163.3 88 85.2
Lsat_1_v5_gn_6_64460 Lactuca sativa HOM05D004850 ORTHO05D005971 9.8e-39 163.3 88 87.5
Lj2A240G35 Lonicera japonica HOM05D004850 ORTHO05D005971 9.8e-39 163.3 88 87.5
Thecc.03G228700 Theobroma cacao HOM05D004850 ORTHO05D005971 9.8e-39 163.3 88 87.5
Actinidia03377 Actinidia chinensis HOM05D004850 ORTHO05D005971 1.3e-38 162.9 88 87.5
Ca_24651_v3 Cicer arietinum L. HOM05D004850 ORTHO05D005971 1.3e-38 162.9 88 85.2
Dinv28952 Davidia involucrata HOM05D004850 ORTHO05D005971 1.7e-38 162.5 88 87.5
Rhsim11G0014400 Rhododendron simsii HOM05D004850 ORTHO05D005971 1.7e-38 162.5 88 86.4
vmacro00333 Vaccinium macrocarpon HOM05D004850 ORTHO05D005971 1.7e-38 162.5 88 86.4
Lj2g0005935 Lotus japonicus HOM05D004850 ORTHO05D005971 2.2e-38 162.2 88 85.2
QL12p005631 Quercus lobata HOM05D004850 ORTHO05D005971 2.2e-38 162.2 88 86.4
VMungo1215G1005 Vigna mungo HOM05D004850 ORTHO05D005971 2.2e-38 162.2 90 84.4
SGA_v2.0_scaffold20G09279 Striga asiatica HOM05D004850 ORTHO05D005971 2.9e-38 161.8 88 86.4
THA.LOC104827763 Tarenaya hassleriana HOM05D004850 ORTHO05D005971 2.9e-38 161.8 90 85.6
Medtr5g014410 Medicago truncatula HOM05D004850 ORTHO05D005971 3.7e-38 161.4 88 84.1
Peaxi162Scf00460g00615 Petunia axillaris HOM05D004850 ORTHO05D005971 3.7e-38 161.4 88 86.4
Phvul.002G007200 Phaseolus vulgaris HOM05D004850 ORTHO05D005971 3.7e-38 161.4 90 83.3
CiPaw.11G092600 Carya illinoinensis HOM05D004850 ORTHO05D005971 4.9e-38 161.0 88 86.4
MD16G1275900 Malus domestica HOM05D004850 ORTHO05D005971 4.9e-38 161.0 88 85.2
Aa31LG6G570 Aethionema arabicum HOM05D004850 ORTHO05D005971 6.4e-38 160.6 90 85.6
Cc00_g30170 Coffea canephora HOM05D004850 ORTHO05D005971 6.4e-38 160.6 88 86.4
Lalb_Chr05g0213951 Lupinus albus HOM05D004850 ORTHO05D005971 6.4e-38 160.6 88 85.2
Lalb_Chr16g0379121 Lupinus albus HOM05D004850 ORTHO05D005971 6.4e-38 160.6 88 84.1
Manes.17G013000 Manihot esculenta HOM05D004850 ORTHO05D005971 6.4e-38 160.6 88 86.4
MD06G1033100 Malus domestica HOM05D004850 ORTHO05D005971 8.3e-38 160.2 88 85.2
Duzib084G0351 Durio zibethinus HOM05D004850 ORTHO05D005971 1.1e-37 159.8 88 85.2
GSVIVG01013167001 Vitis vinifera HOM05D004850 ORTHO05D005971 1.1e-37 159.8 88 85.2
Nitab4.5_0001963g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 1.4e-37 159.5 88 85.2
Cpa.g.sc239.6 Carica papaya HOM05D004850 ORTHO05D005971 1.9e-37 159.1 88 84.1
Prupe.5G038300 Prunus persica HOM05D004850 ORTHO05D005971 1.9e-37 159.1 88 83.0
CAN.G1381.2 Capsicum annuum HOM05D004850 ORTHO05D005971 2.4e-37 158.7 88 85.2
Cfa012428 Carpinus fangiana HOM05D004850 ORTHO05D005971 2.4e-37 158.7 88 85.2
Haze_08241 Corylus avellana HOM05D004850 ORTHO05D005971 2.4e-37 158.7 88 85.2
Nitab4.5_0008181g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 2.4e-37 158.7 86 87.2
arahy.Tifrunner.gnm1.ann1.IM2DA2 Arachis hypogaea HOM05D004850 ORTHO05D005971 3.2e-37 158.3 87 85.1
arahy.Tifrunner.gnm1.ann1.Y05B39 Arachis hypogaea HOM05D004850 ORTHO05D005971 3.2e-37 158.3 87 85.1
Cc11_g03830 Coffea canephora HOM05D004850 ORTHO05D005971 3.2e-37 158.3 88 85.2
DCAR_031774 Daucus carota HOM05D004850 ORTHO05D005971 3.2e-37 158.3 88 85.2
Hma1.2p1_0991F.1_g245100 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 3.2e-37 158.3 88 85.2
Oeu006991.2 Olea europaea HOM05D004850 ORTHO05D005971 3.2e-37 158.3 87 86.2
Potri.003G091100 Populus trichocarpa HOM05D004850 ORTHO05D005971 3.2e-37 158.3 88 86.4
TWI15G0149 Tripterygium wilfordii HOM05D004850 ORTHO05D005971 3.2e-37 158.3 88 84.1
CARHR224550 Cardamine hirsuta HOM05D004850 ORTHO05D005971 4.1e-37 157.9 90 83.3
Eucgr.D02190 Eucalyptus grandis HOM05D004850 ORTHO05D005971 4.1e-37 157.9 88 85.2
Gohir.D03G170933 Gossypium hirsutum HOM05D004850 ORTHO05D005971 5.4e-37 157.5 90 83.3
Gorai.003G181400 Gossypium raimondii HOM05D004850 ORTHO05D005971 5.4e-37 157.5 90 83.3
Ciclev10031569m.g Citrus clementina HOM05D004850 ORTHO05D005971 7.0e-37 157.1 88 84.1
Migut.E00931 Erythranthe guttata HOM05D004850 ORTHO05D005971 7.0e-37 157.1 88 85.2
Gohir.A03G001400 Gossypium hirsutum HOM05D004850 ORTHO05D005971 7.0e-37 157.1 90 83.3
Solyc08g076990.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 7.0e-37 157.1 88 84.1
Sopen08g025570 Solanum pennellii HOM05D004850 ORTHO05D005971 7.0e-37 157.1 88 84.1
MD06G1033200 Malus domestica HOM05D004850 ORTHO05D005971 9.2e-37 156.8 87 85.1
MSTRG.1982 Avicennia marina HOM05D004850 ORTHO05D005971 1.2e-36 156.4 88 83.0
Carub.0007s2353 Capsella rubella HOM05D004850 ORTHO05D005971 1.2e-36 156.4 90 82.2
Thhalv10025214m.g Eutrema salsugineum HOM05D004850 ORTHO05D005971 1.2e-36 156.4 90 83.3
Sabra03G0060800 Salix brachista HOM05D004850 ORTHO05D005971 1.2e-36 156.4 88 85.2
EL10Ac5g12130 Beta vulgaris HOM05D004850 ORTHO05D005971 1.6e-36 156.0 90 83.3
C07p49180 Brassica napus HOM05D004850 ORTHO05D005971 1.6e-36 156.0 90 83.3
BolC7t45428H Brassica oleracea HOM05D004850 ORTHO05D005971 1.6e-36 156.0 90 83.3
Psat2g173240 Pisum sativum HOM05D004850 ORTHO05D005971 1.6e-36 156.0 90 80.0
Ah.12g054980 Amaranthus hybridus HOM05D004850 ORTHO05D005971 2.1e-36 155.6 90 82.2
AL7G36700 Arabidopsis lyrata HOM05D004850 ORTHO05D005971 2.1e-36 155.6 90 81.1
A03p50790 Brassica napus HOM05D004850 ORTHO05D005971 2.7e-36 155.2 90 82.2
HanXRQChr06g0178401 Helianthus annuus HOM05D004850 ORTHO05D005971 2.7e-36 155.2 88 84.1
CSS0027944 Camellia sinensis var. sinensis HOM05D004850 ORTHO05D005971 3.5e-36 154.8 88 83.0
Duzib205G2010 Durio zibethinus HOM05D004850 ORTHO05D005971 3.5e-36 154.8 88 83.0
Glyma.01G198600 Glycine max HOM05D004850 ORTHO05D005971 3.5e-36 154.8 88 81.8
A01p09880 Brassica napus HOM05D004850 ORTHO05D005971 4.6e-36 154.5 90 82.2
BraA03t14168Z Brassica rapa HOM05D004850 ORTHO05D005971 4.6e-36 154.5 90 82.2
RcHm_v2.0_Chr7g0209441 Rosa chinensis HOM05D004850 ORTHO05D005971 4.6e-36 154.5 88 81.8
Sp7g16280 Schrenkiella parvula HOM05D004850 ORTHO05D005971 4.6e-36 154.5 90 82.2
BcaC09g51599 Brassica carinata HOM05D004850 ORTHO05D005971 1.3e-35 152.9 90 81.1
AUR62018722 Chenopodium quinoa HOM05D004850 ORTHO05D005971 1.3e-35 152.9 90 81.1
Dinv25211 Davidia involucrata HOM05D004850 ORTHO05D005971 1.3e-35 152.9 88 79.5
Nn1g00519 Nelumbo nucifera HOM05D004850 ORTHO05D005971 1.3e-35 152.9 88 81.8
Nn6g33598 Nelumbo nucifera HOM05D004850 ORTHO05D005971 1.7e-35 152.5 88 80.7
PGR031G0111 Punica granatum HOM05D004850 ORTHO05D005971 1.7e-35 152.5 88 80.7
AT4G17830 Arabidopsis thaliana HOM05D004850 ORTHO05D005971 2.3e-35 152.1 90 81.1
FvH4_5g21890 Fragaria vesca HOM05D004850 ORTHO05D005971 2.3e-35 152.1 88 81.8
FAN18G1246 Fragaria x ananassa HOM05D004850 ORTHO05D005971 2.3e-35 152.1 88 81.8
ATR0049G003 Amborella trichopoda HOM05D004850 ORTHO05D005971 3.0e-35 151.8 88 80.7
Aqoxy3G02383 Aquilegia oxysepala HOM05D004850 ORTHO05D005971 3.0e-35 151.8 88 79.5
PSO063G6489 Papaver somniferum HOM05D004850 ORTHO05D005971 3.9e-35 151.4 88 78.4
FAN08G3086 Fragaria x ananassa HOM05D004850 ORTHO05D005971 8.6e-35 150.2 88 80.7
FAN13G0589 Fragaria x ananassa HOM05D004850 ORTHO05D005971 8.6e-35 150.2 88 80.7
CDE11G0367 Ceratophyllum demersum HOM05D004850 ORTHO05D005971 1.5e-34 149.4 88 78.4
TAR629G1238 Trochodendron aralioides HOM05D004850 ORTHO05D005971 1.5e-34 149.4 88 81.8
Zm00001eb251190 Zea mays HOM05D004850 ORTHO05D005971 2.5e-34 148.7 90 75.6
AagrBONN_evm.TU.Sc2ySwM_117.1258 Anthoceros agrestis HOM05D004850 ORTHO05D005971 1.2e-33 146.4 88 78.4
HPP92_001721 Vanilla planifolia HOM05D004850 ORTHO05D005971 1.6e-33 146.0 88 75.0
SMO353G0234 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 2.1e-33 145.6 88 76.1
BraA01t00932Z Brassica rapa HOM05D004850 ORTHO05D005971 4.7e-33 144.4 105 70.5
BolC1t01126H Brassica oleracea HOM05D004850 ORTHO05D005971 6.2e-33 144.1 106 69.8
HanXRQChr10g0285061 Helianthus annuus HOM05D004850 ORTHO05D005971 3.1e-32 141.7 88 77.3
Os02g0690800 Oryza sativa ssp. japonica HOM05D004850 ORTHO05D005971 8.9e-32 140.2 90 72.2
Psat2g173320 Pisum sativum HOM05D004850 ORTHO05D005971 1.5e-31 139.4 88 72.7
Solyc08g076970.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 1.5e-31 139.4 90 72.2
Sopen08g025550 Solanum pennellii HOM05D004850 ORTHO05D005971 2.0e-31 139.0 90 73.3
Solyc08g076980.4 Solanum lycopersicum HOM05D004850 ORTHO05D005971 7.5e-31 137.1 90 72.2
Sopen08g025560 Solanum pennellii HOM05D004850 ORTHO05D005971 1.3e-30 136.3 90 72.2
Pp3c6_20970 Physcomitrium patens HOM05D004850 ORTHO05D005971 6.4e-30 134.0 89 69.7
Mapoly0013s0175 Marchantia polymorpha HOM05D004850 ORTHO05D005971 1.1e-29 133.3 87 71.3
PGSC0003DMG400017513 Solanum tuberosum HOM05D004850 ORTHO05D005971 1.9e-29 132.5 90 70.0
MELO3C003400.2 Cucumis melo HOM05D004850 ORTHO05D005971 1.0e-27 126.7 90 65.6
CsaV3_3G049270 Cucumis sativus L. HOM05D004850 ORTHO05D005971 1.0e-27 126.7 90 65.6
HPP92_001566 Vanilla planifolia HOM05D004850 ORTHO05D005971 1.3e-27 126.3 70 78.6
CBR_g51240 Chara braunii HOM05D004850 ORTHO05D005971 3.9e-27 124.8 85 68.2
ClCG09G012020 Citrullus lanatus HOM05D004850 ORTHO05D005971 3.9e-27 124.8 90 64.4
ClCG09G012030 Citrullus lanatus HOM05D004850 ORTHO05D005971 6.6e-27 124.0 90 62.2
Sed0023890 Sechium edule HOM05D004850 ORTHO05D005971 1.1e-26 123.2 90 63.3
MELO3C003399.2 Cucumis melo HOM05D004850 ORTHO05D005971 2.5e-26 122.1 90 58.9
Cre02.g105500 Chlamydomonas reinhardtii HOM05D004850 ORTHO05D005971 4.3e-26 121.3 85 61.2
ClCG09G012040 Citrullus lanatus HOM05D004850 ORTHO05D005971 9.5e-26 120.2 90 60.0
CsaV3_3G049280 Cucumis sativus L. HOM05D004850 ORTHO05D005971 3.6e-25 118.2 90 58.9
MELO3C003398.2 Cucumis melo HOM05D004850 ORTHO05D005971 4.7e-25 117.9 90 58.9
Sed0011615 Sechium edule HOM05D004850 ORTHO05D005971 1.1e-24 116.7 90 61.1
MD02G1199500 Malus domestica HOM05D004850 ORTHO05D048674 1.2e-23 113.2 68 73.5
SMO116G0259 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 2.6e-23 112.1 83 60.2
AUR62007282 Chenopodium quinoa HOM05D004850 ORTHO05D005971 1.7e-22 109.4 62 85.5
Actinidia28173 Actinidia chinensis HOM05D004850 ORTHO05D005971 2.2e-22 109.0 89 67.4
Actinidia25960 Actinidia chinensis HOM05D004850 ORTHO05D005971 3.8e-22 108.2 89 67.4
C01p11580 Brassica napus HOM05D004850 ORTHO05D005971 5.4e-21 104.4 90 58.9
MD15G1380000 Malus domestica HOM05D004850 ORTHO05D048674 1.6e-20 102.8 56 76.8
MCO07G613 Micromonas commoda HOM05D004850 ORTHO05D005971 3.3e-18 95.1 88 53.4
Sc03g0003930 Simmondsia chinensis HOM05D004850 ORTHO05D005971 6.9e-16 87.4 40 90.0
Lsat_1_v5_gn_9_53361 Lactuca sativa HOM05D003461 ORTHO05D004386 1.3e-14 83.2 49 79.6
Lsat_1_v5_gn_4_90040 Lactuca sativa HOM05D003461 ORTHO05D004386 3.8e-14 81.6 38 86.8
SHI07365 Sapria himalayana HOM05D004850 ORTHO05D005971 4.9e-14 81.3 50 82.0
SEGI_19032 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 5.4e-13 77.8 50 78.0
SEGI_04366 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 2.3e-11 72.4 40 72.5
Lsat_1_v5_gn_8_141060 Lactuca sativa HOM05D003461 ORTHO05D004386 5.6e-10 67.8 82 48.8
arahy.Tifrunner.gnm1.ann1.RD5L31 Arachis hypogaea HOM05D004850 ORTHO05D005971 1.6e-09 66.2 49 69.4


User provided reference genes

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