Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc22g0003030 Simmondsia chinensis HOM05D003892 ORTHO05D004522 0.0e+00 1221.8 614 100.0
EL10Ac5g11803 Beta vulgaris HOM05D003892 ORTHO05D004522 2.3e-191 672.9 625 60.0
AUR62038416 Chenopodium quinoa HOM05D003892 ORTHO05D004522 1.6e-189 666.8 630 59.5
Hund10790 Selenicereus undatus HOM05D003892 ORTHO05D004522 5.3e-188 661.8 626 58.5
AUR62036307 Chenopodium quinoa HOM05D003892 ORTHO05D004522 2.2e-186 656.4 633 58.9
TAR633G1336 Trochodendron aralioides HOM05D003892 ORTHO05D004522 1.4e-169 600.5 639 53.7
Cfa017615 Carpinus fangiana HOM05D003892 ORTHO05D004522 5.1e-167 592.0 635 53.1
QL07p026283 Quercus lobata HOM05D003892 ORTHO05D004522 5.1e-167 592.0 639 53.4
Ah.12g059580 Amaranthus hybridus HOM05D003892 ORTHO05D004522 1.4e-164 583.9 626 55.3
CiPaw.10G021500 Carya illinoinensis HOM05D003892 ORTHO05D004522 1.4e-164 583.9 634 53.0
CSS0037074 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 2.0e-163 580.1 636 53.0
GSVIVG01015854001 Vitis vinifera HOM05D003892 ORTHO05D004522 3.4e-163 579.3 636 53.3
COL.COLO4_29492 Corchorus olitorius HOM05D003892 ORTHO05D004522 1.7e-162 577.0 632 51.3
Hma1.2p1_0304F.1_g119340 Hydrangea macrophylla HOM05D003892 ORTHO05D004522 3.8e-162 575.9 636 52.0
Ciclev10011278m.g Citrus clementina HOM05D003892 ORTHO05D004522 1.1e-161 574.3 636 51.6
Thecc.05G110400 Theobroma cacao HOM05D003892 ORTHO05D004522 1.1e-161 574.3 633 51.8
Nn2g14423 Nelumbo nucifera HOM05D003892 ORTHO05D004522 6.1e-160 568.5 644 52.5
Lj1C1061G1 Lonicera japonica HOM05D003892 ORTHO05D004522 7.9e-160 568.2 635 52.0
Duzib106G1451 Durio zibethinus HOM05D003892 ORTHO05D004522 1.3e-159 567.4 632 50.6
Manes.08G037500 Manihot esculenta HOM05D003892 ORTHO05D004522 5.1e-159 565.5 632 52.4
Potri.016G065600 Populus trichocarpa HOM05D003892 ORTHO05D004522 5.1e-159 565.5 635 52.4
Gohir.D04G093300 Gossypium hirsutum HOM05D003892 ORTHO05D004522 6.7e-159 565.1 627 51.7
Gorai.009G395500 Gossypium raimondii HOM05D003892 ORTHO05D004522 2.8e-157 559.7 627 51.5
Potri.006G199200 Populus trichocarpa HOM05D003892 ORTHO05D004522 2.4e-156 556.6 631 52.3
TWI15G0645 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 5.0e-154 548.9 633 52.6
Actinidia03963 Actinidia chinensis HOM05D003892 ORTHO05D004522 1.1e-153 547.7 656 50.3
Duzib128G1914 Durio zibethinus HOM05D003892 ORTHO05D004522 1.4e-153 547.4 632 49.2
Glyma.03G205000 Glycine max HOM05D003892 ORTHO05D004522 1.6e-152 543.9 636 51.3
Lj1g0007585 Lotus japonicus HOM05D003892 ORTHO05D004522 6.1e-152 542.0 637 50.2
Haze_20130 Corylus avellana HOM05D003892 ORTHO05D004522 1.8e-151 540.4 694 47.7
Gorai.002G233300 Gossypium raimondii HOM05D003892 ORTHO05D004522 3.0e-151 539.7 629 49.4
Atru.chr8.1281 Acer truncatum HOM05D003892 ORTHO05D004522 6.7e-151 538.5 661 48.1
Gohir.D01G189600 Gossypium hirsutum HOM05D003892 ORTHO05D004522 2.0e-150 537.0 629 49.1
Sed0022353 Sechium edule HOM05D003892 ORTHO05D004522 7.4e-150 535.0 632 50.9
Gohir.A01G199500 Gossypium hirsutum HOM05D003892 ORTHO05D004522 9.7e-150 534.6 632 48.7
Prupe.7G089700 Prunus persica HOM05D003892 ORTHO05D004522 2.8e-149 533.1 632 49.8
Glyma.19G202400 Glycine max HOM05D003892 ORTHO05D004522 3.7e-149 532.7 637 49.1
Eucgr.A02543 Eucalyptus grandis HOM05D003892 ORTHO05D004522 2.6e-147 526.6 646 48.0
Medtr7g106900 Medicago truncatula HOM05D003892 ORTHO05D004522 1.0e-146 524.6 633 48.0
DCAR_013462 Daucus carota HOM05D003892 ORTHO05D004522 8.5e-146 521.5 638 48.6
arahy.Tifrunner.gnm1.ann1.H4389H Arachis hypogaea HOM05D003892 ORTHO05D004522 1.4e-145 520.8 668 47.3
Ca_09081_v3 Cicer arietinum L. HOM05D003892 ORTHO05D004522 4.2e-145 519.2 634 49.2
Lalb_Chr01g0017711 Lupinus albus HOM05D003892 ORTHO05D004522 4.2e-145 519.2 655 48.4
Phvul.001G198500 Phaseolus vulgaris HOM05D003892 ORTHO05D004522 4.2e-145 519.2 630 48.7
MD14G1044900 Malus domestica HOM05D003892 ORTHO05D004522 7.2e-145 518.5 632 49.1
MD12G1046200 Malus domestica HOM05D003892 ORTHO05D004522 1.2e-144 517.7 628 48.9
Psat3g027080 Pisum sativum HOM05D003892 ORTHO05D004522 1.6e-144 517.3 631 48.5
Rhsim03G0058500 Rhododendron simsii HOM05D003892 ORTHO05D004522 2.1e-144 516.9 647 48.1
Solyc01g006700.3 Solanum lycopersicum HOM05D003892 ORTHO05D004522 3.6e-144 516.2 633 48.5
ClCG10G017850 Citrullus lanatus HOM05D003892 ORTHO05D004522 3.9e-143 512.7 634 49.1
THA.LOC104825242 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 1.1e-142 511.1 636 47.6
TPR.G34451 Trifolium pratense HOM05D003892 ORTHO05D004522 9.7e-142 508.1 628 47.9
VMungo1383G0340 Vigna mungo HOM05D003892 ORTHO05D004522 2.2e-141 506.9 633 48.8
Sopen01g002690 Solanum pennellii HOM05D003892 ORTHO05D004522 2.8e-141 506.5 638 47.8
Lalb_Chr25g0287841 Lupinus albus HOM05D003892 ORTHO05D004522 8.2e-141 505.0 612 48.7
Cc06_g06980 Coffea canephora HOM05D003892 ORTHO05D004522 5.3e-140 502.3 607 48.6
Aqoxy2G02397 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 7.0e-140 501.9 644 47.0
PGSC0003DMG400021344 Solanum tuberosum HOM05D003892 ORTHO05D004522 7.0e-140 501.9 639 47.7
CANSAT64G1569 Cannabis sativa HOM05D003892 ORTHO05D004522 9.1e-140 501.5 640 48.0
Aqoxy1G00583 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 1.2e-139 501.1 644 48.1
arahy.Tifrunner.gnm1.ann1.IGZ3F9 Arachis hypogaea HOM05D003892 ORTHO05D004522 8.5e-138 495.0 615 48.9
PSO210G1032 Papaver somniferum HOM05D003892 ORTHO05D004522 8.5e-138 495.0 648 46.6
MELO3C009588.2 Cucumis melo HOM05D003892 ORTHO05D004522 1.5e-137 494.2 639 48.7
Sabra16G0067100 Salix brachista HOM05D003892 ORTHO05D004522 1.5e-137 494.2 631 48.2
Dinv25081 Davidia involucrata HOM05D003892 ORTHO05D004522 1.9e-137 493.8 502 57.0
CAN.G388.52 Capsicum annuum HOM05D003892 ORTHO05D004522 4.2e-137 492.7 645 47.3
FAN05G2923 Fragaria x ananassa HOM05D003892 ORTHO05D004522 5.5e-137 492.3 631 47.2
FAN02G1525 Fragaria x ananassa HOM05D003892 ORTHO05D004522 2.7e-136 490.0 631 47.4
PSO832G2838 Papaver somniferum HOM05D003892 ORTHO05D004522 4.7e-136 489.2 647 45.9
CsaV3_3G038440 Cucumis sativus L. HOM05D003892 ORTHO05D004522 1.4e-135 487.6 637 48.2
Oeu058130.1 Olea europaea HOM05D003892 ORTHO05D004522 6.7e-135 485.3 688 45.3
Sp5g07700 Schrenkiella parvula HOM05D003892 ORTHO05D004522 6.7e-135 485.3 639 44.3
MSTRG.5909 Avicennia marina HOM05D003892 ORTHO05D004522 8.8e-135 485.0 635 48.3
Lj6g0017825 Lotus japonicus HOM05D003892 ORTHO05D004522 8.8e-135 485.0 612 48.0
Sabra06G0153100 Salix brachista HOM05D003892 ORTHO05D004522 2.6e-134 483.4 632 48.4
Aa31LG11G3840 Aethionema arabicum HOM05D003892 ORTHO05D004522 2.2e-133 480.3 636 46.4
PGR004G2391 Punica granatum HOM05D003892 ORTHO05D004522 2.8e-133 479.9 632 47.5
FAN14G4612 Fragaria x ananassa HOM05D003892 ORTHO05D004522 7.0e-132 475.3 662 45.5
FAN05G3327 Fragaria x ananassa HOM05D003892 ORTHO05D004522 2.0e-131 473.8 662 45.2
CARHR164690 Cardamine hirsuta HOM05D003892 ORTHO05D004522 1.3e-130 471.1 634 44.8
THA.LOC104824220 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 1.3e-130 471.1 638 45.3
arahy.Tifrunner.gnm1.ann1.L9LT45 Arachis hypogaea HOM05D003892 ORTHO05D004522 1.7e-130 470.7 650 46.0
HanXRQChr13g0398781 Helianthus annuus HOM05D003892 ORTHO05D004522 5.0e-130 469.2 612 46.4
MBI11_g43834_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 8.5e-130 468.4 648 47.1
SGA_v2.0_scaffold112G31566 Striga asiatica HOM05D003892 ORTHO05D004522 1.5e-129 467.6 638 46.2
RcHm_v2.0_Chr3g0477411 Rosa chinensis HOM05D003892 ORTHO05D004522 2.5e-129 466.8 629 46.4
arahy.Tifrunner.gnm1.ann1.P5VIE6 Arachis hypogaea HOM05D003892 ORTHO05D004522 4.2e-129 466.1 635 45.5
BcaC07g39789 Brassica carinata HOM05D003892 ORTHO05D004522 7.5e-126 455.3 639 44.3
SGA_v2.0_scaffold31G12827 Striga asiatica HOM05D003892 ORTHO05D004522 7.5e-126 455.3 631 47.1
A09p47680 Brassica napus HOM05D003892 ORTHO05D004522 9.7e-126 454.9 639 44.1
Carub.0005s2135 Capsella rubella HOM05D003892 ORTHO05D004522 1.3e-125 454.5 634 44.8
HanXRQChr02g0052851 Helianthus annuus HOM05D003892 ORTHO05D004522 1.3e-125 454.5 636 46.2
BraA09t40224Z Brassica rapa HOM05D003892 ORTHO05D004522 1.7e-125 454.1 640 44.2
AL5G35820 Arabidopsis lyrata HOM05D003892 ORTHO05D004522 3.7e-125 453.0 638 44.4
AT3G54750 Arabidopsis thaliana HOM05D003892 ORTHO05D004522 3.7e-125 453.0 612 44.1
BolC8t50600H Brassica oleracea HOM05D003892 ORTHO05D004522 3.7e-125 453.0 636 43.7
SalBow1G1519 Salvia bowleyana HOM05D003892 ORTHO05D004522 3.7e-125 453.0 637 45.2
Lsat_1_v5_gn_6_34240 Lactuca sativa HOM05D003892 ORTHO05D004522 4.8e-125 452.6 612 46.6
SalBow1G7123 Salvia bowleyana HOM05D003892 ORTHO05D004522 4.8e-125 452.6 637 45.2
Thhalv10010226m.g Eutrema salsugineum HOM05D003892 ORTHO05D004522 5.3e-124 449.1 611 43.5
ECA233G3816 Erigeron canadensis HOM05D003892 ORTHO05D004522 2.7e-123 446.8 617 44.9
BcaB01g00163 Brassica carinata HOM05D003892 ORTHO05D004522 1.0e-122 444.9 664 41.9
C08p29890 Brassica napus HOM05D003892 ORTHO05D004522 1.0e-122 444.9 642 44.1
TWI81G0594 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 2.2e-122 443.7 501 52.9
Peaxi162Scf00751g00063 Petunia axillaris HOM05D003892 ORTHO05D004522 1.1e-121 441.4 640 44.4
Nitab4.5_0003430g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 3.2e-121 439.9 635 44.9
Migut.J00728 Erythranthe guttata HOM05D003892 ORTHO05D004522 4.2e-121 439.5 630 45.1
HPP92_013933 Vanilla planifolia HOM05D003892 ORTHO05D004522 7.2e-121 438.7 653 42.9
Peaxi162Scf00210g00093 Petunia axillaris HOM05D003892 ORTHO05D004522 2.1e-120 437.2 640 44.1
TAR636G2427 Trochodendron aralioides HOM05D003892 ORTHO05D004522 4.7e-120 436.0 393 58.8
FvH4_6g21040 Fragaria vesca HOM05D003892 ORTHO05D004522 1.4e-119 434.5 562 47.5
CDE07G1113 Ceratophyllum demersum HOM05D003892 ORTHO05D004522 5.2e-119 432.6 629 43.4
BraA04t16218Z Brassica rapa HOM05D003892 ORTHO05D004522 4.4e-118 429.5 631 42.6
BcaB02g08458 Brassica carinata HOM05D003892 ORTHO05D004522 2.2e-117 427.2 631 41.7
ATR0580G241 Amborella trichopoda HOM05D003892 ORTHO05D004522 6.3e-117 425.6 610 46.1
A04p05070 Brassica napus HOM05D003892 ORTHO05D004522 1.8e-116 424.1 630 42.4
Zm00001eb032200 Zea mays HOM05D003892 ORTHO05D004522 2.3e-114 417.2 628 41.7
Os12g0621700 Oryza sativa ssp. japonica HOM05D003892 ORTHO05D004522 3.8e-114 416.4 605 41.3
BcaC02g09701 Brassica carinata HOM05D003892 ORTHO05D004522 1.9e-113 414.1 630 41.9
C04p37570 Brassica napus HOM05D003892 ORTHO05D004522 4.2e-113 412.9 630 41.7
Sed0022528 Sechium edule HOM05D003892 ORTHO05D004522 2.8e-112 410.2 634 45.0
ECA238G3852 Erigeron canadensis HOM05D003892 ORTHO05D004522 1.8e-111 407.5 609 42.5
Dinv11899 Davidia involucrata HOM05D003892 ORTHO05D004522 7.8e-107 392.1 413 54.7
Aa31LG2G20030 Aethionema arabicum HOM05D003892 ORTHO05D004522 1.0e-103 381.7 557 44.2
Cpa.g.sc222.13 Carica papaya HOM05D003892 ORTHO05D004522 2.7e-99 367.1 576 40.3
Lsat_1_v5_gn_2_121661 Lactuca sativa HOM05D003892 ORTHO05D004522 5.0e-98 362.8 599 42.4
Medtr7g029625 Medicago truncatula HOM05D003892 ORTHO05D004522 1.2e-96 358.2 634 41.0
Gohir.A04G055942 Gossypium hirsutum HOM05D003892 ORTHO05D004522 2.2e-93 347.4 319 55.8
MBI11_g33439_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 2.4e-92 344.0 355 55.8
Nitab4.5_0000300g0030 Nicotiana tabacum HOM05D003892 ORTHO05D004522 7.8e-83 312.4 497 43.1
CSS0004478 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 5.1e-82 309.7 370 50.0
Actinidia37779 Actinidia chinensis HOM05D003892 ORTHO05D004522 6.2e-80 302.8 256 61.3
GSVIVG01020969001 Vitis vinifera HOM05D003892 ORTHO05D004522 3.1e-79 300.4 375 50.7
Sed0005279 Sechium edule HOM05D000521 ORTHO05D004522 7.3e-73 279.3 395 47.6
vmacro07513 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 3.6e-64 250.4 386 42.7
SMO351G0585 Selaginella moellendorffii HOM05D003892 ORTHO05D004522 3.1e-63 247.3 592 33.8
Pp3c26_8020 Physcomitrium patens HOM05D003892 ORTHO05D004522 7.6e-62 242.7 495 34.1
Gohir.D07G211433 Gossypium hirsutum HOM05D003892 ORTHO05D004522 2.4e-60 237.7 417 40.3
SHI28320 Sapria himalayana HOM05D003892 ORTHO05D004522 2.1e-59 234.6 583 32.8
arahy.Tifrunner.gnm1.ann1.75SLRD Arachis hypogaea HOM05D003892 ORTHO05D004522 4.6e-59 233.4 258 53.9
Pp3c4_31220 Physcomitrium patens HOM05D003892 ORTHO05D004522 4.3e-57 226.9 441 34.5
AagrBONN_evm.TU.Sc2ySwM_228.3493 Anthoceros agrestis HOM05D003892 ORTHO05D004522 8.1e-56 222.6 372 36.6
unitig_749.g14208 Utricularia gibba HOM05D003892 ORTHO05D004522 2.2e-53 214.5 236 47.9
unitig_26.g9151 Utricularia gibba HOM05D003892 ORTHO05D004522 3.8e-53 213.8 245 48.6
Cfa017831 Carpinus fangiana HOM05D003892 ORTHO05D004522 1.4e-52 211.8 202 52.0
Mapoly0011s0047 Marchantia polymorpha HOM05D003892 ORTHO05D004522 1.5e-49 201.8 587 30.5
Nitab4.5_0000429g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 3.7e-48 197.2 327 40.1
CSS0016552 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 1.4e-44 185.3 212 51.9
Gohir.A04G055921 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.9e-44 184.9 258 47.3
vmacro07512 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 2.4e-39 167.9 251 44.6
CBR_g20103 Chara braunii HOM05D003892 ORTHO05D004522 1.9e-36 158.3 360 32.2
GSVIVG01020973001 Vitis vinifera HOM05D003892 ORTHO05D004522 8.8e-34 149.4 230 40.9
HPP92_012152 Vanilla planifolia HOM05D003892 ORTHO05D004522 2.9e-29 134.4 135 49.6
GSVIVG01020966001 Vitis vinifera HOM05D003892 ORTHO05D004522 7.2e-28 129.8 95 67.4
arahy.Tifrunner.gnm1.ann1.R2HNIM Arachis hypogaea HOM05D003892 ORTHO05D004522 9.4e-28 129.4 287 36.9
TAR636G1189 Trochodendron aralioides HOM05D003892 ORTHO05D004522 6.7e-26 123.2 199 43.2
Nitab4.5_0003430g0040 Nicotiana tabacum HOM05D003892 ORTHO05D004522 1.5e-25 122.1 217 36.9
Aqoxy2G02169 Aquilegia oxysepala HOM05D001785 ORTHO05D001933 1.7e-24 118.6 261 36.0
arahy.Tifrunner.gnm1.ann1.84GXZP Arachis hypogaea HOM05D003892 ORTHO05D004522 2.8e-24 117.9 265 36.2
arahy.Tifrunner.gnm1.ann1.C1NY7P Arachis hypogaea HOM05D003892 ORTHO05D004522 3.7e-24 117.5 285 34.0
Actinidia37778 Actinidia chinensis HOM05D003892 ORTHO05D004522 3.8e-21 107.5 250 35.2
SEGI_25684 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 4.2e-20 104.0 267 33.7
SEGI_30208 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 3.7e-16 90.9 83 50.6
arahy.Tifrunner.gnm1.ann1.U7JCXR Arachis hypogaea HOM05D003892 ORTHO05D004522 2.4e-15 88.2 196 34.2
Cre03.g197600 Chlamydomonas reinhardtii HOM05D003892 ORTHO05D004522 2.4e-15 88.2 273 27.5
ATR1154G016 Amborella trichopoda HOM05D003892 ORTHO05D004522 9.1e-15 86.3 110 40.0
arahy.Tifrunner.gnm1.ann1.Z2YKN3 Arachis hypogaea HOM05D003892 ORTHO05D004522 1.3e-13 82.4 199 34.2
Ah.02g116070 Amaranthus hybridus HOM05D003892 ORTHO05D004522 9.4e-12 76.3 88 50.0
Sabra17G0067200 Salix brachista HOM05D003892 ORTHO05D004522 9.4e-12 76.3 89 48.3
GSVIVG01022517001 Vitis vinifera HOM05D003892 ORTHO05D004522 7.5e-09 66.6 65 46.2
CSS0023890 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 1.7e-08 65.5 82 42.7
ATR1154G039 Amborella trichopoda HOM05D003892 ORTHO05D004522 6.3e-08 63.5 143 37.8
Glyma.10G214400 Glycine max HOM05D003892 ORTHO05D004522 9.1e-07 59.7 41 65.9
Aa31LG2G20020 Aethionema arabicum HOM05D003892 ORTHO05D004522 4.5e-06 57.4 81 48.1


User provided reference genes

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