Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc22g0002990 Simmondsia chinensis HOM05D000483 ORTHO05D000158 4.4e-64 248.1 149 100.0
EL10Ac5g11784 Beta vulgaris HOM05D000483 ORTHO05D000158 6.0e-21 104.8 111 45.0
PSO339G3216 Papaver somniferum HOM05D000483 ORTHO05D000158 2.1e-18 96.3 105 47.6
Ah.12g059530 Amaranthus hybridus HOM05D000483 ORTHO05D000158 3.6e-18 95.5 104 45.2
Potri.016G064000 Populus trichocarpa HOM05D000483 ORTHO05D000158 6.2e-18 94.7 104 45.2
Glyma.02G167700 Glycine max HOM05D000483 ORTHO05D000158 1.4e-17 93.6 108 47.2
Cc06_g07100 Coffea canephora HOM05D000483 ORTHO05D000158 1.8e-17 93.2 105 46.7
Manes.08G038600 Manihot esculenta HOM05D000483 ORTHO05D000158 1.8e-17 93.2 101 50.5
PSO384G3795 Papaver somniferum HOM05D000483 ORTHO05D000158 1.8e-17 93.2 106 44.3
Sc22g0003000 Simmondsia chinensis HOM05D000483 ORTHO05D000158 9.0e-17 90.9 105 44.8
TWI74G0894 Tripterygium wilfordii HOM05D000483 ORTHO05D000158 1.2e-16 90.5 103 47.6
Duzib093G1885 Durio zibethinus HOM05D000483 ORTHO05D000158 1.5e-16 90.1 104 45.2
MBI11_g25052_MAGBIO Magnolia biondii HOM05D000483 ORTHO05D000158 1.5e-16 90.1 104 43.3
TPR.G30773 Trifolium pratense HOM05D000483 ORTHO05D000158 1.5e-16 90.1 110 45.5
Nn2g14449 Nelumbo nucifera HOM05D000483 ORTHO05D000158 2.0e-16 89.7 102 46.1
Potri.006G198200 Populus trichocarpa HOM05D000483 ORTHO05D000158 2.6e-16 89.4 104 44.2
QL07p025852 Quercus lobata HOM05D000483 ORTHO05D000158 2.6e-16 89.4 104 45.2
TAR623G0227 Trochodendron aralioides HOM05D000483 ORTHO05D000158 2.6e-16 89.4 101 45.5
Ca_18102_v3 Cicer arietinum L. HOM05D000483 ORTHO05D000158 4.5e-16 88.6 108 45.4
Eucgr.K01888 Eucalyptus grandis HOM05D000483 ORTHO05D000158 4.5e-16 88.6 102 48.0
Medtr1g054750 Medicago truncatula HOM05D000483 ORTHO05D000158 4.5e-16 88.6 107 44.9
Cfa020103 Carpinus fangiana HOM05D000483 ORTHO05D000158 7.6e-16 87.8 104 44.2
Dinv25090 Davidia involucrata HOM05D000483 ORTHO05D000158 7.6e-16 87.8 105 42.9
Cpa.g.sc85.4 Carica papaya HOM05D000483 ORTHO05D000158 1.3e-15 87.0 99 44.4
Phvul.007G264400 Phaseolus vulgaris HOM05D000483 ORTHO05D000158 3.8e-15 85.5 104 44.2
THA.LOC104802796 Tarenaya hassleriana HOM05D000483 ORTHO05D000158 3.8e-15 85.5 104 44.2
Sabra16G0066100 Salix brachista HOM05D000483 ORTHO05D000158 1.1e-14 84.0 92 41.3
RcHm_v2.0_Chr3g0477711 Rosa chinensis HOM05D000483 ORTHO05D000158 1.4e-14 83.6 104 40.4
Ciclev10012833m.g Citrus clementina HOM05D000483 ORTHO05D000158 2.4e-14 82.8 104 48.1
AUR62036293 Chenopodium quinoa HOM05D000483 ORTHO05D000158 4.2e-14 82.0 101 43.6
Prupe.7G087400 Prunus persica HOM05D000483 ORTHO05D000158 4.2e-14 82.0 113 43.4
VMungo0720G1243 Vigna mungo HOM05D000483 ORTHO05D000158 4.2e-14 82.0 105 43.8
Ciclev10012835m.g Citrus clementina HOM05D000483 ORTHO05D000158 5.4e-14 81.6 105 43.8
Sp5g04430 Schrenkiella parvula HOM05D000483 ORTHO05D000158 5.4e-14 81.6 107 41.1
FvH4_6g21250 Fragaria vesca HOM05D000483 ORTHO05D000158 7.1e-14 81.3 104 40.4
FAN14G1387 Fragaria x ananassa HOM05D000483 ORTHO05D000158 7.1e-14 81.3 104 40.4
Carub.0003s1125 Capsella rubella HOM05D000483 ORTHO05D000158 9.3e-14 80.9 108 43.5
CANSAT64G0658 Cannabis sativa HOM05D000483 ORTHO05D000158 1.2e-13 80.5 108 45.4
FAN05G2567 Fragaria x ananassa HOM05D000483 ORTHO05D000158 1.2e-13 80.5 104 40.4
FAN05G3320 Fragaria x ananassa HOM05D000483 ORTHO05D000158 1.2e-13 80.5 104 40.4
BcaB02g07523 Brassica carinata HOM05D000483 ORTHO05D000158 1.6e-13 80.1 104 41.3
Haze_20088 Corylus avellana HOM05D000483 ORTHO05D000158 1.6e-13 80.1 105 42.9
ECA248G2049 Erigeron canadensis HOM05D000483 ORTHO05D000158 1.6e-13 80.1 110 40.9
EL10Ac5g11783 Beta vulgaris HOM05D000483 ORTHO05D000158 2.7e-13 79.3 101 39.6
Atru.chr8.1249 Acer truncatum HOM05D000483 ORTHO05D000158 3.5e-13 79.0 102 46.1
FAN02G0201 Fragaria x ananassa HOM05D000483 ORTHO05D000158 3.5e-13 79.0 104 39.4
BcaC01g04072 Brassica carinata HOM05D000483 ORTHO05D000158 4.6e-13 78.6 104 41.3
A03p37350 Brassica napus HOM05D000483 ORTHO05D000158 4.6e-13 78.6 104 41.3
C03p45350 Brassica napus HOM05D000483 ORTHO05D000158 4.6e-13 78.6 104 41.3
BolC3t16801H Brassica oleracea HOM05D000483 ORTHO05D000158 4.6e-13 78.6 104 41.3
Psat6g110680 Pisum sativum HOM05D000483 ORTHO05D000158 4.6e-13 78.6 105 42.9
Migut.J00752 Erythranthe guttata HOM05D000483 ORTHO05D000158 1.0e-12 77.4 104 40.4
MD14G1047700 Malus domestica HOM05D000483 ORTHO05D000158 1.0e-12 77.4 113 39.8
Actinidia07955 Actinidia chinensis HOM05D000483 ORTHO05D000158 1.3e-12 77.0 104 40.4
BcaB04g21110 Brassica carinata HOM05D000483 ORTHO05D000158 1.3e-12 77.0 104 41.3
PGR142G2775 Punica granatum HOM05D000483 ORTHO05D000158 1.3e-12 77.0 118 40.7
arahy.Tifrunner.gnm1.ann1.39RBWA Arachis hypogaea HOM05D000483 ORTHO05D000158 1.8e-12 76.6 104 43.3
arahy.Tifrunner.gnm1.ann1.IE6UM0 Arachis hypogaea HOM05D000483 ORTHO05D000158 1.8e-12 76.6 114 39.5
BcaC09g48186 Brassica carinata HOM05D000483 ORTHO05D000158 1.8e-12 76.6 104 41.3
BolC1t05280H Brassica oleracea HOM05D000483 ORTHO05D000158 1.8e-12 76.6 104 41.3
BraA01t04151Z Brassica rapa HOM05D000483 ORTHO05D000158 1.8e-12 76.6 104 41.3
CARHR086460 Cardamine hirsuta HOM05D000483 ORTHO05D000158 2.3e-12 76.3 104 41.3
DCAR_020673 Daucus carota HOM05D000483 ORTHO05D000158 2.3e-12 76.3 107 43.0
Medtr1g054765 Medicago truncatula HOM05D000483 ORTHO05D000158 2.3e-12 76.3 107 39.3
Aa31LG10G13010 Aethionema arabicum HOM05D000483 ORTHO05D000158 3.0e-12 75.9 104 39.4
BcaB04g18668 Brassica carinata HOM05D000483 ORTHO05D000158 3.0e-12 75.9 104 40.4
Ciclev10013408m.g Citrus clementina HOM05D000483 ORTHO05D000158 3.0e-12 75.9 103 44.7
ECA238G2543 Erigeron canadensis HOM05D000483 ORTHO05D000158 3.0e-12 75.9 103 40.8
FAN05G2191 Fragaria x ananassa HOM05D000483 ORTHO05D000158 3.0e-12 75.9 102 40.2
FAN05G2898 Fragaria x ananassa HOM05D000483 ORTHO05D000158 3.0e-12 75.9 102 40.2
Lalb_Chr02g0153971 Lupinus albus HOM05D000483 ORTHO05D000158 3.0e-12 75.9 107 38.3
Thecc.05G181800 Theobroma cacao HOM05D000483 ORTHO05D000158 3.0e-12 75.9 101 43.6
Thecc.05G181900 Theobroma cacao HOM05D000483 ORTHO05D000158 3.0e-12 75.9 105 42.9
A07p24140 Brassica napus HOM05D000483 ORTHO05D000158 3.9e-12 75.5 107 38.3
BraA07t30058Z Brassica rapa HOM05D000483 ORTHO05D000158 5.1e-12 75.1 107 37.4
AT3G11930 Arabidopsis thaliana HOM05D000483 ORTHO05D000158 6.7e-12 74.7 101 38.6
FAN02G2029 Fragaria x ananassa HOM05D000483 ORTHO05D000158 6.7e-12 74.7 102 39.2
Ah.16g107070 Amaranthus hybridus HOM05D000483 ORTHO05D000158 8.7e-12 74.3 101 40.6
AL3G23520 Arabidopsis lyrata HOM05D000483 ORTHO05D000158 8.7e-12 74.3 104 41.3
Thhalv10006473m.g Eutrema salsugineum HOM05D000483 ORTHO05D000158 8.7e-12 74.3 104 35.6
Lsat_1_v5_gn_1_56421 Lactuca sativa HOM05D000483 ORTHO05D000158 8.7e-12 74.3 112 38.4
Sp3g10140 Schrenkiella parvula HOM05D000483 ORTHO05D000158 8.7e-12 74.3 104 40.4
AT3G58450 Arabidopsis thaliana HOM05D000483 ORTHO05D000158 1.5e-11 73.6 104 37.5
arahy.Tifrunner.gnm1.ann1.62PGH0 Arachis hypogaea HOM05D000483 ORTHO05D000158 1.5e-11 73.6 101 42.6
BcaC08g44918 Brassica carinata HOM05D000483 ORTHO05D000158 1.5e-11 73.6 102 38.2
C06p25440 Brassica napus HOM05D000483 ORTHO05D000158 1.5e-11 73.6 102 38.2
BolC6t37705H Brassica oleracea HOM05D000483 ORTHO05D000158 1.5e-11 73.6 102 38.2
HanXRQChr01g0026251 Helianthus annuus HOM05D000483 ORTHO05D000158 1.9e-11 73.2 109 39.4
arahy.Tifrunner.gnm1.ann1.PSWV5K Arachis hypogaea HOM05D000483 ORTHO05D000158 2.5e-11 72.8 114 38.6
Oeu020200.1 Olea europaea HOM05D000483 ORTHO05D000158 2.5e-11 72.8 105 37.1
THA.LOC104809940 Tarenaya hassleriana HOM05D000483 ORTHO05D000158 2.5e-11 72.8 106 40.6
Carub.0005s2519 Capsella rubella HOM05D000483 ORTHO05D000158 3.3e-11 72.4 104 36.5
CARHR086470 Cardamine hirsuta HOM05D000483 ORTHO05D000158 3.3e-11 72.4 104 40.4
BraA05t22543Z Brassica rapa HOM05D000483 ORTHO05D000158 4.3e-11 72.0 104 41.3
A05p37450 Brassica napus HOM05D000483 ORTHO05D000158 5.6e-11 71.6 104 41.3
Lj5g0020936 Lotus japonicus HOM05D000483 ORTHO05D000158 5.6e-11 71.6 113 38.9
BcaC05g29311 Brassica carinata HOM05D000483 ORTHO05D000158 1.3e-10 70.5 104 39.4
C05p56020 Brassica napus HOM05D000483 ORTHO05D000158 1.3e-10 70.5 104 39.4
BolC5t34269H Brassica oleracea HOM05D000483 ORTHO05D000158 1.3e-10 70.5 104 39.4
CARHR168840 Cardamine hirsuta HOM05D000483 ORTHO05D000158 1.3e-10 70.5 106 38.7
Gohir.D04G093600 Gossypium hirsutum HOM05D000483 ORTHO05D000158 2.1e-10 69.7 112 40.2
HanXRQChr01g0026261 Helianthus annuus HOM05D000483 ORTHO05D000158 2.1e-10 69.7 107 36.4
Oeu008929.1 Olea europaea HOM05D000483 ORTHO05D000158 2.8e-10 69.3 103 38.8
Sopen01g021170 Solanum pennellii HOM05D000483 ORTHO05D000158 2.8e-10 69.3 104 40.4
PGSC0003DMG401033888 Solanum tuberosum HOM05D000483 ORTHO05D000158 2.8e-10 69.3 99 41.4
Gorai.009G396200 Gossypium raimondii HOM05D000483 ORTHO05D000158 3.7e-10 68.9 109 39.4
Aqoxy1G00570 Aquilegia oxysepala HOM05D000483 ORTHO05D000158 4.8e-10 68.6 110 33.6
Gohir.A04G056300 Gossypium hirsutum HOM05D000483 ORTHO05D000158 6.2e-10 68.2 109 39.4
Peaxi162Scf00425g00088 Petunia axillaris HOM05D000483 ORTHO05D000158 6.2e-10 68.2 103 35.9
Peaxi162Scf00645g00057 Petunia axillaris HOM05D000483 ORTHO05D000158 6.2e-10 68.2 103 35.9
Solyc01g057000.3 Solanum lycopersicum HOM05D000483 ORTHO05D000158 6.2e-10 68.2 104 39.4
AL5G40210 Arabidopsis lyrata HOM05D000483 ORTHO05D000158 8.1e-10 67.8 98 38.8
Lsat_1_v5_gn_2_102220 Lactuca sativa HOM05D000483 ORTHO05D000158 8.1e-10 67.8 101 36.6
Nitab4.5_0004925g0010 Nicotiana tabacum HOM05D000483 ORTHO05D000158 1.8e-09 66.6 103 36.9
Thhalv10021565m.g Eutrema salsugineum HOM05D000483 ORTHO05D000158 3.1e-09 65.9 101 37.6
Gorai.006G146300 Gossypium raimondii HOM05D000483 ORTHO05D000158 3.1e-09 65.9 105 40.0
Aa31LG3G5610 Aethionema arabicum HOM05D000483 ORTHO05D000158 4.0e-09 65.5 104 36.5
Sc22g0002980 Simmondsia chinensis HOM05D000483 ORTHO05D000158 4.0e-09 65.5 99 37.4
THA.LOC104799271 Tarenaya hassleriana HOM05D000483 ORTHO05D000158 4.0e-09 65.5 108 34.3
Nitab4.5_0006161g0020 Nicotiana tabacum HOM05D000483 ORTHO05D000158 5.3e-09 65.1 103 36.9
CAN.G303.37 Capsicum annuum HOM05D000483 ORTHO05D000158 6.9e-09 64.7 98 41.8
Migut.J00750 Erythranthe guttata HOM05D000483 ORTHO05D000158 6.9e-09 64.7 103 38.8
Oeu045009.2 Olea europaea HOM05D000483 ORTHO05D000158 9.0e-09 64.3 102 36.3
Prupe.7G087300 Prunus persica HOM05D000483 ORTHO05D000158 1.2e-08 63.9 117 33.3
ECA248G1992 Erigeron canadensis HOM05D000483 ORTHO05D000158 1.5e-08 63.5 103 39.8
Gohir.A09G131500 Gossypium hirsutum HOM05D000483 ORTHO05D000158 1.5e-08 63.5 106 39.6
HanXRQChr01g0026281 Helianthus annuus HOM05D000483 ORTHO05D000158 3.4e-08 62.4 101 38.6
Duzib128G1421 Durio zibethinus HOM05D000483 ORTHO05D000158 4.5e-08 62.0 92 41.3
Thecc.05G182000 Theobroma cacao HOM05D000483 ORTHO05D000158 4.5e-08 62.0 107 36.4
AUR62038408 Chenopodium quinoa HOM05D000483 ORTHO05D000158 5.8e-08 61.6 60 48.3
Duzib093G0408 Durio zibethinus HOM05D000483 ORTHO05D000158 5.8e-08 61.6 104 37.5
Prupe.7G087200 Prunus persica HOM05D000483 ORTHO05D000158 5.8e-08 61.6 118 33.1
HanXRQChr11g0347631 Helianthus annuus HOM05D000483 ORTHO05D000158 7.6e-08 61.2 101 38.6
Oeu003852.1 Olea europaea HOM05D000483 ORTHO05D000158 7.6e-08 61.2 103 35.9
Os10g0437500 Oryza sativa ssp. japonica HOM05D000483 ORTHO05D000158 1.3e-07 60.5 108 37.0
HPP92_028254 Vanilla planifolia HOM05D000483 ORTHO05D000158 1.7e-07 60.1 102 33.3
Lj5g0023588 Lotus japonicus HOM05D000483 ORTHO05D000158 2.2e-07 59.7 100 38.0
GSVIVG01022496001 Vitis vinifera HOM05D000483 ORTHO05D000158 2.2e-07 59.7 58 51.7
Cc06_g07090 Coffea canephora HOM05D000483 ORTHO05D000158 2.9e-07 59.3 114 36.0
Lsat_1_v5_gn_1_56381 Lactuca sativa HOM05D000483 ORTHO05D000158 3.8e-07 58.9 102 36.3
arahy.Tifrunner.gnm1.ann1.158UBA Arachis hypogaea HOM05D000483 ORTHO05D000158 6.4e-07 58.2 84 39.3
HanXRQChr07g0197031 Helianthus annuus HOM05D000483 ORTHO05D000158 6.4e-07 58.2 103 33.0
unitig_22.g5154 Utricularia gibba HOM05D000483 ORTHO05D000158 8.4e-07 57.8 100 40.0
BraA03t12896Z Brassica rapa HOM05D000483 ORTHO05D000158 2.4e-06 56.2 103 35.0
BcaC07g40201 Brassica carinata HOM05D000483 ORTHO05D000158 3.2e-06 55.8 104 33.7
Cc11_g09980 Coffea canephora HOM05D000483 ORTHO05D000158 3.2e-06 55.8 97 35.1
C08p33840 Brassica napus HOM05D000483 ORTHO05D000158 4.2e-06 55.5 103 34.0
BolC8t50982H Brassica oleracea HOM05D000483 ORTHO05D000158 4.2e-06 55.5 103 34.0
HanXRQChr07g0197041 Helianthus annuus HOM05D000483 ORTHO05D000158 5.5e-06 55.1 101 35.6
Zm00001eb057350 Zea mays HOM05D000483 ORTHO05D000158 7.1e-06 54.7 108 34.3


User provided reference genes

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